Wall clock time and date at job start Tue Mar 31 2020 07:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47261 * 2 1 4 4 C 1.50710 * 109.47110 * 240.00665 * 2 1 3 5 5 H 1.07998 * 119.99852 * 239.99562 * 4 2 1 6 6 C 1.37879 * 119.99961 * 59.99536 * 4 2 1 7 7 N 1.31518 * 120.00083 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47230 * 90.00127 * 8 6 4 10 10 H 1.48499 * 109.47017 * 210.00004 * 8 6 4 11 11 H 1.48500 * 109.46787 * 329.99983 * 8 6 4 12 12 C 1.50692 * 109.47501 * 120.00553 * 2 1 3 13 13 O 1.21284 * 120.00023 * 120.00305 * 12 2 1 14 14 N 1.34779 * 120.00237 * 299.99909 * 12 2 1 15 15 C 1.46496 * 120.00320 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.47260 * 34.99887 * 15 14 12 17 17 C 1.52999 * 109.47135 * 275.00030 * 15 14 12 18 18 O 1.42903 * 109.47256 * 295.00379 * 17 15 14 19 19 C 1.53002 * 109.47141 * 155.00131 * 15 14 12 20 20 H 1.09000 * 109.47132 * 184.99855 * 19 15 14 21 21 O 1.42898 * 109.47087 * 64.99848 * 19 15 14 22 22 C 1.50697 * 109.47035 * 305.00007 * 19 15 14 23 23 C 1.38675 * 120.41662 * 264.99768 * 22 19 15 24 24 C 1.38632 * 118.42268 * 180.02562 * 23 22 19 25 25 C 1.38226 * 119.15606 * 359.97438 * 24 23 22 26 26 N 1.31858 * 120.76919 * 0.02562 * 25 24 23 27 27 C 1.31883 * 121.72015 * 359.70073 * 26 25 24 28 28 H 1.09005 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47444 * 299.99349 * 1 2 3 30 30 H 1.08996 * 109.47315 * 59.99439 * 1 2 3 31 31 H 0.96999 * 120.00324 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99742 * 0.02562 * 14 12 2 33 33 H 1.08997 * 109.47286 * 174.99939 * 17 15 14 34 34 H 1.09008 * 109.47201 * 54.99719 * 17 15 14 35 35 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 36 36 H 0.96699 * 114.00130 * 299.99615 * 21 19 15 37 37 H 1.08006 * 120.79040 * 359.97438 * 23 22 19 38 38 H 1.07991 * 120.42114 * 180.02562 * 24 23 22 39 39 H 1.07998 * 119.61347 * 179.97438 * 25 24 23 40 40 H 1.07996 * 119.61683 * 180.31231 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.3426 -2.1613 -4.4121 10 1 2.4863 -0.1409 -5.1124 11 1 3.6292 -1.7579 -3.7124 12 6 2.0323 -0.7105 1.2303 13 8 2.7297 -1.6965 1.1189 14 7 1.7068 -0.2502 2.4545 15 6 2.1957 -0.9405 3.6506 16 1 3.1951 -1.3323 3.4610 17 6 1.2522 -2.0948 3.9946 18 8 -0.0277 -1.5722 4.3563 19 6 2.2470 0.0427 4.8218 20 1 2.6935 -0.4465 5.6875 21 8 0.9215 0.4673 5.1456 22 6 3.0779 1.2395 4.4369 23 6 4.4240 1.2947 4.7658 24 6 5.1492 2.4155 4.3920 25 6 4.5110 3.4333 3.7082 26 7 3.2290 3.3467 3.4121 27 6 2.5096 2.2934 3.7472 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.7092 1.1621 -3.4843 32 1 1.1489 0.5383 2.5436 33 1 1.6622 -2.6625 4.8299 34 1 1.1463 -2.7481 3.1284 35 1 -0.6780 -2.2495 4.5879 36 1 0.4626 0.9119 4.4197 37 1 4.8960 0.4841 5.3012 38 1 6.1995 2.4921 4.6312 39 1 5.0687 4.3100 3.4137 40 1 1.4631 2.2559 3.4831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151383901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:06 Heat of formation + Delta-G solvation = -127.702494 kcal Electronic energy + Delta-G solvation = -24614.713659 eV Core-core repulsion = 21007.449619 eV Total energy + Delta-G solvation = -3607.264040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.68560 -40.54732 -38.82663 -36.95727 -35.79104 -35.05386 -33.70513 -32.69573 -32.15179 -30.40158 -27.21790 -26.87256 -24.95099 -24.47408 -23.38341 -21.98071 -21.10749 -18.79886 -18.47443 -18.38224 -17.87175 -17.50667 -17.25582 -16.94346 -16.53872 -16.04562 -15.42463 -15.16013 -15.07071 -14.94979 -14.76260 -14.40467 -14.27574 -13.98011 -13.72537 -13.49696 -13.11221 -12.99085 -12.71398 -12.70363 -12.61566 -12.37845 -12.21531 -12.01711 -11.28251 -11.06278 -10.83901 -10.74940 -10.58067 -10.36702 -10.30177 -9.98693 -9.90771 -8.16168 -6.27240 0.11532 0.34002 1.39032 1.39292 1.51168 1.90889 2.25482 2.46594 2.80577 3.13149 3.33488 3.38832 3.51951 3.63377 3.85320 3.92870 4.04201 4.13556 4.26033 4.31828 4.47281 4.54348 4.63242 4.70571 4.72453 4.82231 4.83427 4.93570 5.01537 5.15615 5.24303 5.47243 5.56187 5.72677 5.74661 5.91804 6.18952 6.64431 6.67216 6.82921 7.00292 7.01692 7.38067 7.50784 8.89675 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.005292 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.963964 B = 5289.356453 C = 6272.483565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.025 3.975 3 H 0.031 0.969 4 C -0.528 4.528 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.528 3.472 13 O -0.583 6.583 14 N -0.712 5.712 15 C 0.114 3.886 16 H 0.092 0.908 17 C 0.078 3.922 18 O -0.559 6.559 19 C 0.167 3.833 20 H 0.143 0.857 21 O -0.532 6.532 22 C -0.174 4.174 23 C -0.072 4.072 24 C -0.168 4.168 25 C 0.078 3.922 26 N -0.513 5.513 27 C 0.092 3.908 28 H 0.023 0.977 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.400 0.600 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.387 0.613 36 H 0.375 0.625 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.174 0.826 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 0.716 18.932 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.004 3.996 3 H 0.049 0.951 4 C -0.567 4.567 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.203 1.203 12 C 0.317 3.683 13 O -0.463 6.463 14 N -0.366 5.366 15 C 0.008 3.992 16 H 0.110 0.890 17 C -0.001 4.001 18 O -0.366 6.366 19 C 0.106 3.894 20 H 0.160 0.840 21 O -0.337 6.337 22 C -0.176 4.176 23 C -0.098 4.098 24 C -0.187 4.187 25 C -0.078 4.078 26 N -0.221 5.221 27 C -0.064 4.064 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.236 0.764 36 H 0.223 0.777 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.191 0.809 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.627 1.130 18.732 19.113 hybrid contribution 0.066 -0.949 -1.279 1.594 sum 3.693 0.182 17.452 17.840 Atomic orbital electron populations 1.21514 0.95054 0.99329 1.01484 1.18765 0.95296 0.95520 0.90019 0.95090 1.21280 1.31615 1.12709 0.91080 0.93222 1.25627 0.95211 0.95722 1.01524 1.69964 1.37250 1.23549 1.24294 0.85591 0.78673 0.78540 0.79070 1.19805 1.20059 1.20304 1.21393 0.77924 0.83590 0.85398 1.90496 1.39909 1.28456 1.87394 1.45910 1.53992 1.32130 1.04549 1.21913 0.98249 0.93601 0.85392 0.88972 1.22316 0.85168 0.94261 0.98377 1.86533 1.21864 1.37794 1.90376 1.20926 0.83029 0.89047 0.96356 0.83992 1.86639 1.25809 1.79367 1.41864 1.21679 0.96953 0.98321 1.00690 1.21850 0.92656 0.98607 0.96720 1.22495 1.02810 0.94261 0.99149 1.23281 0.90376 0.99722 0.94449 1.67653 1.08993 1.26032 1.19449 1.22550 1.00178 0.89490 0.94222 0.95801 0.93311 0.91259 0.92628 0.76408 0.90431 0.95913 0.76414 0.77652 0.81741 0.81519 0.80897 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.87 71.98 0.64 -4.76 16 2 C 0.03 1.29 2.64 -12.29 -0.03 1.26 16 3 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 4 C -0.53 -31.03 8.37 25.60 0.21 -30.81 16 5 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -52.25 11.32 21.45 0.24 -52.01 16 8 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 12 C 0.53 23.95 7.11 87.65 0.62 24.57 16 13 O -0.58 -30.22 15.12 -3.04 -0.05 -30.26 16 14 N -0.71 -23.53 4.11 -442.54 -1.82 -25.35 16 15 C 0.11 2.99 2.35 44.99 0.11 3.10 16 16 H 0.09 2.67 7.58 -2.39 -0.02 2.65 16 17 C 0.08 1.87 6.85 71.98 0.49 2.36 16 18 O -0.56 -12.24 11.13 -126.65 -1.41 -13.65 16 19 C 0.17 3.42 3.13 29.85 0.09 3.51 16 20 H 0.14 2.18 8.06 -2.39 -0.02 2.16 16 21 O -0.53 -11.59 10.74 -126.65 -1.36 -12.95 16 22 C -0.17 -3.97 4.78 -19.77 -0.09 -4.07 16 23 C -0.07 -1.40 9.84 22.47 0.22 -1.18 16 24 C -0.17 -3.17 10.11 22.36 0.23 -2.94 16 25 C 0.08 1.84 11.18 84.69 0.95 2.78 16 26 N -0.51 -15.07 10.36 -195.85 -2.03 -17.09 16 27 C 0.09 2.48 9.36 84.67 0.79 3.27 16 28 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.05 1.86 7.56 -2.39 -0.02 1.84 16 30 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 31 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.40 11.93 5.04 -92.71 -0.47 11.47 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.39 5.57 9.12 -74.06 -0.68 4.90 16 36 H 0.37 7.68 6.22 -74.06 -0.46 7.22 16 37 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.17 1.96 8.06 -2.92 -0.02 1.94 16 39 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 40 H 0.15 3.64 5.64 -2.91 -0.02 3.62 16 Total: -1.00 -75.34 330.66 -0.23 -75.57 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.51 Total: 29.68 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 4.68 Total: -1.42 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -3.60 Total: -94.45 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -2.82 Total: -56.87 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.34 -0.23 -75.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151383901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.132 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds