Wall clock time and date at job start Tue Mar 31 2020 06:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47204 * 2 1 4 4 H 1.09000 * 109.46994 * 306.16837 * 3 2 1 5 5 C 1.50694 * 109.47088 * 186.17077 * 3 2 1 6 6 H 1.08001 * 120.00406 * 335.11148 * 5 3 2 7 7 C 1.37882 * 120.00208 * 155.11352 * 5 3 2 8 8 N 1.31521 * 119.99818 * 357.16668 * 7 5 3 9 9 Si 1.86798 * 120.00241 * 176.88996 * 7 5 3 10 10 H 1.48497 * 109.47049 * 89.99910 * 9 7 5 11 11 H 1.48496 * 109.47139 * 209.99956 * 9 7 5 12 12 H 1.48499 * 109.46921 * 330.00216 * 9 7 5 13 13 N 1.46499 * 109.47179 * 66.16514 * 3 2 1 14 14 C 1.38437 * 120.00113 * 275.00331 * 13 3 2 15 15 N 1.32367 * 119.77455 * 354.46602 * 14 13 3 16 16 C 1.31862 * 121.84329 * 179.97438 * 15 14 13 17 17 C 1.38821 * 121.15994 * 359.97438 * 16 15 14 18 18 O 1.36023 * 120.29910 * 179.97438 * 17 16 15 19 19 C 1.42905 * 116.99738 * 0.02562 * 18 17 16 20 20 C 1.38709 * 119.40257 * 0.02562 * 17 16 15 21 21 C 1.40065 * 118.31624 * 359.74704 * 20 17 16 22 22 C 1.47289 * 120.58816 * 180.26479 * 21 20 17 23 23 O 1.21523 * 119.99987 * 185.04366 * 22 21 20 24 24 O 1.34775 * 119.99900 * 5.04588 * 22 21 20 25 25 C 1.45200 * 116.99733 * 179.97438 * 24 22 21 26 26 H 1.08995 * 109.47009 * 300.00187 * 1 2 3 27 27 H 1.09000 * 109.47368 * 60.00128 * 1 2 3 28 28 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46865 * 239.99919 * 2 1 3 30 30 H 1.08994 * 109.46935 * 119.99793 * 2 1 3 31 31 H 0.97000 * 119.99689 * 5.16794 * 8 7 5 32 32 H 0.97004 * 119.99770 * 95.00406 * 13 3 2 33 33 H 1.08001 * 119.41866 * 179.97438 * 16 15 14 34 34 H 1.08998 * 109.46789 * 299.99390 * 19 18 17 35 35 H 1.09001 * 109.47283 * 59.99668 * 19 18 17 36 36 H 1.09004 * 109.46743 * 179.97438 * 19 18 17 37 37 H 1.08009 * 120.83651 * 179.97438 * 20 17 16 38 38 H 1.08995 * 109.47240 * 300.00086 * 25 24 22 39 39 H 1.09002 * 109.47011 * 59.99951 * 25 24 22 40 40 H 1.09004 * 109.46888 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5893 1.9872 -0.8296 5 6 3.5392 1.4452 -0.1527 6 1 4.1148 0.5842 0.1535 7 6 4.1762 2.5469 -0.6834 8 7 3.4713 3.5730 -1.1077 9 14 6.0406 2.5855 -0.7924 10 1 6.4720 2.0183 -2.0953 11 1 6.5140 3.9886 -0.6823 12 1 6.6178 1.7800 0.3135 13 7 1.6766 2.0889 1.2634 14 6 0.4288 2.6703 1.4096 15 7 -0.3909 2.7371 0.3724 16 6 -1.5883 3.2813 0.4659 17 6 -2.0448 3.8114 1.6650 18 8 -3.2830 4.3693 1.7415 19 6 -4.0661 4.3768 0.5461 20 6 -1.2265 3.7680 2.7841 21 6 0.0388 3.1802 2.6596 22 6 0.9461 3.1021 3.8171 23 8 2.0747 2.6739 3.6767 24 8 0.5247 3.5056 5.0321 25 6 1.4723 3.3995 6.1271 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.5099 3.5873 -0.9793 32 1 2.3104 2.1096 1.9975 33 1 -2.2251 3.3153 -0.4058 34 1 -3.5408 4.9351 -0.2288 35 1 -4.2266 3.3523 0.2104 36 1 -5.0284 4.8486 0.7452 37 1 -1.5580 4.1739 3.7285 38 1 1.7693 2.3582 6.2510 39 1 2.3518 4.0044 5.9064 40 1 1.0072 3.7569 7.0459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:30 Heat of formation + Delta-G solvation = -80.003488 kcal Electronic energy + Delta-G solvation = -24536.769206 eV Core-core repulsion = 20931.573550 eV Total energy + Delta-G solvation = -3605.195656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68483 -39.61663 -38.09348 -36.24841 -35.79424 -32.47545 -32.40654 -31.58669 -29.03375 -27.64544 -27.18471 -26.05025 -24.14336 -23.14045 -22.16394 -21.06450 -19.93586 -18.21876 -17.54015 -17.08681 -16.81759 -16.25218 -16.14035 -15.79285 -15.58120 -14.53939 -14.19758 -13.88871 -13.78039 -13.66574 -13.29700 -13.06302 -12.85104 -12.71677 -12.56604 -12.23298 -11.93215 -11.80379 -11.41740 -11.05338 -10.81500 -10.77038 -10.65601 -10.40480 -10.27210 -10.16275 -9.97590 -9.43205 -9.10413 -8.96234 -8.67546 -8.42751 -6.67294 -6.50484 -4.31374 0.96766 1.95350 2.87351 2.89608 3.37216 3.42245 3.48307 3.58113 4.17186 4.28860 4.43972 4.78901 4.96163 5.12437 5.18099 5.20421 5.22411 5.26767 5.28262 5.44412 5.48072 5.59079 5.77449 5.96500 5.98308 6.05631 6.16664 6.21248 6.43017 6.64836 6.67453 6.81425 6.91572 7.04453 7.30735 7.51965 7.80348 8.00991 8.11397 8.31238 8.41156 8.71702 9.09376 9.48705 10.86677 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.006026 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.289145 B = 4645.364912 C = 5804.064775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.236 3.764 4 H 0.062 0.938 5 C -0.606 4.606 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.890 5.890 9 Si 1.072 2.928 10 H -0.285 1.285 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.657 5.657 14 C 0.440 3.560 15 N -0.506 5.506 16 C 0.128 3.872 17 C -0.041 4.041 18 O -0.320 6.320 19 C 0.029 3.971 20 C 0.003 3.997 21 C -0.260 4.260 22 C 0.523 3.477 23 O -0.510 6.510 24 O -0.358 6.358 25 C 0.037 3.963 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.278 0.722 32 H 0.414 0.586 33 H 0.156 0.844 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.144 0.856 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 0.589 7.893 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.136 3.864 4 H 0.080 0.920 5 C -0.644 4.644 6 H 0.074 0.926 7 C -0.177 4.177 8 N -0.523 5.523 9 Si 0.899 3.101 10 H -0.212 1.212 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.291 5.291 14 C 0.197 3.803 15 N -0.224 5.224 16 C -0.038 4.038 17 C -0.090 4.090 18 O -0.234 6.234 19 C -0.067 4.067 20 C -0.024 4.024 21 C -0.272 4.272 22 C 0.371 3.629 23 O -0.399 6.399 24 O -0.275 6.275 25 C -0.057 4.057 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.263 0.737 33 H 0.173 0.827 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.161 0.839 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.620 0.957 6.585 11.698 hybrid contribution -1.309 -0.574 1.499 2.071 sum -10.929 0.383 8.084 13.600 Atomic orbital electron populations 1.21830 0.97389 0.98758 1.01703 1.21817 0.94020 0.99233 1.00573 1.19108 0.95348 0.88721 0.83256 0.91981 1.22139 0.91208 1.04212 1.46887 0.92595 1.25999 1.07163 0.92356 0.92162 1.70716 1.09836 1.31409 1.40343 0.83518 0.73875 0.76161 0.76523 1.21154 1.20940 1.21210 1.47908 1.09657 1.51690 1.19841 1.18710 0.88137 0.87201 0.86294 1.67563 1.04119 1.21224 1.29496 1.22916 0.92632 0.92427 0.95836 1.19309 0.87937 1.06151 0.95634 1.86010 1.24830 1.77295 1.35227 1.22950 0.95127 1.01512 0.87099 1.20685 0.90217 0.94012 0.97462 1.18967 0.97010 1.18968 0.92206 1.20786 0.85714 0.73983 0.82453 1.90588 1.20697 1.44561 1.84101 1.86540 1.45034 1.78125 1.17768 1.23216 0.92854 1.02620 0.86970 0.93841 0.92509 0.95089 0.92081 0.93766 0.91077 0.73708 0.82737 0.92935 0.93046 0.88710 0.83871 0.91969 0.91877 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.54 37.16 0.32 -2.37 16 2 C -0.12 -2.57 5.58 -26.73 -0.15 -2.72 16 3 C 0.24 5.90 1.91 -69.09 -0.13 5.77 16 4 H 0.06 1.69 6.05 -51.93 -0.31 1.38 16 5 C -0.61 -16.64 8.50 -34.44 -0.29 -16.93 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.03 0.90 5.46 -17.82 -0.10 0.80 16 8 N -0.89 -26.48 13.62 55.43 0.75 -25.73 16 9 Si 1.07 24.89 29.90 -169.99 -5.08 19.81 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 13 N -0.66 -15.71 5.03 -54.84 -0.28 -15.98 16 14 C 0.44 9.45 5.89 -155.07 -0.91 8.54 16 15 N -0.51 -10.17 6.87 -12.06 -0.08 -10.25 16 16 C 0.13 2.09 10.21 -17.32 -0.18 1.92 16 17 C -0.04 -0.65 6.70 -39.19 -0.26 -0.91 16 18 O -0.32 -4.36 10.51 -19.81 -0.21 -4.57 16 19 C 0.03 0.27 9.82 101.05 0.99 1.26 16 20 C 0.00 0.05 9.68 -38.72 -0.37 -0.33 16 21 C -0.26 -4.99 5.90 -104.68 -0.62 -5.61 16 22 C 0.52 9.87 7.88 34.41 0.27 10.15 16 23 O -0.51 -10.91 13.45 -19.28 -0.26 -11.17 16 24 O -0.36 -5.54 9.90 -40.70 -0.40 -5.94 16 25 C 0.04 0.44 10.57 101.05 1.07 1.51 16 26 H 0.04 0.86 5.70 -51.93 -0.30 0.57 16 27 H 0.06 1.09 7.84 -51.93 -0.41 0.68 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.28 8.38 6.70 -40.82 -0.27 8.11 16 32 H 0.41 10.34 5.09 -40.95 -0.21 10.13 16 33 H 0.16 2.01 6.28 -52.49 -0.33 1.68 16 34 H 0.05 0.46 7.67 -51.93 -0.40 0.07 16 35 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.14 2.03 7.71 -52.48 -0.40 1.63 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 332.72 15.07 5.01 5.01 Total: -1.00 -31.61 332.72 -6.11 -37.71 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.19 Total: 10.02 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.37 Total: 1.08 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.40 Total: -51.96 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.87 Total: -21.68 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.61 -6.11 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.290 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds