Wall clock time and date at job start Tue Mar 31 2020 06:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47204 * 2 1 4 4 H 1.09000 * 109.46994 * 306.16837 * 3 2 1 5 5 C 1.50694 * 109.47088 * 186.17077 * 3 2 1 6 6 H 1.08001 * 120.00406 * 335.11148 * 5 3 2 7 7 C 1.37882 * 120.00208 * 155.11352 * 5 3 2 8 8 N 1.31521 * 119.99818 * 357.16668 * 7 5 3 9 9 Si 1.86798 * 120.00241 * 176.88996 * 7 5 3 10 10 H 1.48497 * 109.47049 * 89.99910 * 9 7 5 11 11 H 1.48496 * 109.47139 * 209.99956 * 9 7 5 12 12 H 1.48499 * 109.46921 * 330.00216 * 9 7 5 13 13 N 1.46499 * 109.47179 * 66.16514 * 3 2 1 14 14 C 1.38437 * 120.00113 * 275.00331 * 13 3 2 15 15 N 1.32367 * 119.77455 * 354.46602 * 14 13 3 16 16 C 1.31862 * 121.84329 * 179.97438 * 15 14 13 17 17 C 1.38821 * 121.15994 * 359.97438 * 16 15 14 18 18 O 1.36023 * 120.29910 * 179.97438 * 17 16 15 19 19 C 1.42905 * 116.99738 * 0.02562 * 18 17 16 20 20 C 1.38709 * 119.40257 * 0.02562 * 17 16 15 21 21 C 1.40065 * 118.31624 * 359.74704 * 20 17 16 22 22 C 1.47289 * 120.58816 * 180.26479 * 21 20 17 23 23 O 1.21523 * 119.99987 * 185.04366 * 22 21 20 24 24 O 1.34775 * 119.99900 * 5.04588 * 22 21 20 25 25 C 1.45200 * 116.99733 * 179.97438 * 24 22 21 26 26 H 1.08995 * 109.47009 * 300.00187 * 1 2 3 27 27 H 1.09000 * 109.47368 * 60.00128 * 1 2 3 28 28 H 1.09005 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46865 * 239.99919 * 2 1 3 30 30 H 1.08994 * 109.46935 * 119.99793 * 2 1 3 31 31 H 0.97000 * 119.99689 * 5.16794 * 8 7 5 32 32 H 0.97004 * 119.99770 * 95.00406 * 13 3 2 33 33 H 1.08001 * 119.41866 * 179.97438 * 16 15 14 34 34 H 1.08998 * 109.46789 * 299.99390 * 19 18 17 35 35 H 1.09001 * 109.47283 * 59.99668 * 19 18 17 36 36 H 1.09004 * 109.46743 * 179.97438 * 19 18 17 37 37 H 1.08009 * 120.83651 * 179.97438 * 20 17 16 38 38 H 1.08995 * 109.47240 * 300.00086 * 25 24 22 39 39 H 1.09002 * 109.47011 * 59.99951 * 25 24 22 40 40 H 1.09004 * 109.46888 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5893 1.9872 -0.8296 5 6 3.5392 1.4452 -0.1527 6 1 4.1148 0.5842 0.1535 7 6 4.1762 2.5469 -0.6834 8 7 3.4713 3.5730 -1.1077 9 14 6.0406 2.5855 -0.7924 10 1 6.4720 2.0183 -2.0953 11 1 6.5140 3.9886 -0.6823 12 1 6.6178 1.7800 0.3135 13 7 1.6766 2.0889 1.2634 14 6 0.4288 2.6703 1.4096 15 7 -0.3909 2.7371 0.3724 16 6 -1.5883 3.2813 0.4659 17 6 -2.0448 3.8114 1.6650 18 8 -3.2830 4.3693 1.7415 19 6 -4.0661 4.3768 0.5461 20 6 -1.2265 3.7680 2.7841 21 6 0.0388 3.1802 2.6596 22 6 0.9461 3.1021 3.8171 23 8 2.0747 2.6739 3.6767 24 8 0.5247 3.5056 5.0321 25 6 1.4723 3.3995 6.1271 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.5099 3.5873 -0.9793 32 1 2.3104 2.1096 1.9975 33 1 -2.2251 3.3153 -0.4058 34 1 -3.5408 4.9351 -0.2288 35 1 -4.2266 3.3523 0.2104 36 1 -5.0284 4.8486 0.7452 37 1 -1.5580 4.1739 3.7285 38 1 1.7693 2.3582 6.2510 39 1 2.3518 4.0044 5.9064 40 1 1.0072 3.7569 7.0459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:30 Heat of formation + Delta-G solvation = -100.134468 kcal Electronic energy + Delta-G solvation = -24537.642151 eV Core-core repulsion = 20931.573550 eV Total energy + Delta-G solvation = -3606.068601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.09937 -40.93663 -39.41043 -37.67573 -37.41303 -34.42695 -33.84160 -33.19283 -30.42623 -28.93062 -28.17263 -27.71433 -25.47519 -25.01251 -23.66651 -22.45604 -21.67278 -19.49746 -19.24500 -18.54582 -18.41137 -17.62812 -17.46071 -17.10891 -16.65280 -16.12558 -15.72286 -15.67450 -15.29869 -14.89321 -14.76951 -14.54681 -14.45118 -14.07938 -13.95239 -13.79477 -13.01011 -12.87017 -12.69933 -12.67260 -12.59495 -12.39269 -12.11446 -11.97442 -11.86142 -11.76031 -11.63734 -10.96512 -10.84610 -10.60988 -10.39340 -10.27041 -8.70598 -8.20585 -6.50215 -0.42785 0.54886 1.44205 1.49684 1.57893 1.63288 1.76335 2.38455 2.48604 2.59652 2.85183 3.24700 3.53813 3.70678 3.85639 3.96420 4.28625 4.30660 4.31366 4.31654 4.34372 4.49821 4.50731 4.54812 4.64453 4.70087 4.84687 4.87167 4.94599 5.07862 5.14803 5.19171 5.24034 5.38848 5.50900 5.83186 6.12370 6.35326 6.46818 6.51189 6.62197 6.78427 7.37344 7.39909 8.66880 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.006026 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.289145 B = 4645.364912 C = 5804.064775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.114 4.114 3 C 0.244 3.756 4 H 0.033 0.967 5 C -0.619 4.619 6 H 0.049 0.951 7 C -0.015 4.015 8 N -0.918 5.918 9 Si 1.116 2.884 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.680 5.680 14 C 0.419 3.581 15 N -0.529 5.529 16 C 0.122 3.878 17 C -0.018 4.018 18 O -0.324 6.324 19 C 0.015 3.985 20 C 0.002 3.998 21 C -0.269 4.269 22 C 0.524 3.476 23 O -0.542 6.542 24 O -0.351 6.351 25 C 0.029 3.971 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.262 0.738 32 H 0.407 0.593 33 H 0.189 0.811 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.124 0.876 37 H 0.168 0.832 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.590 0.881 8.829 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C 0.143 3.857 4 H 0.051 0.949 5 C -0.657 4.657 6 H 0.068 0.932 7 C -0.217 4.217 8 N -0.553 5.553 9 Si 0.938 3.062 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.316 5.316 14 C 0.178 3.822 15 N -0.248 5.248 16 C -0.042 4.042 17 C -0.067 4.067 18 O -0.237 6.237 19 C -0.079 4.079 20 C -0.024 4.024 21 C -0.280 4.280 22 C 0.372 3.628 23 O -0.434 6.434 24 O -0.266 6.266 25 C -0.064 4.064 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.254 0.746 33 H 0.205 0.795 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.186 0.814 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.643 1.263 7.535 13.926 hybrid contribution -0.984 -0.590 1.317 1.747 sum -12.628 0.673 8.852 15.436 Atomic orbital electron populations 1.21660 0.95141 1.00206 1.01115 1.21745 0.96030 0.97346 1.00172 1.18819 0.93867 0.89956 0.83092 0.94870 1.22456 0.92896 1.03863 1.46500 0.93218 1.27331 1.10881 0.91941 0.91577 1.70835 1.09044 1.32607 1.42858 0.82955 0.69331 0.76202 0.77730 1.19210 1.21221 1.19851 1.47262 1.11112 1.54348 1.18843 1.18815 0.87706 0.88017 0.87654 1.67531 1.05367 1.22289 1.29616 1.23457 0.91745 0.91533 0.97476 1.19346 0.88554 1.03976 0.94844 1.86036 1.23683 1.76478 1.37542 1.23347 0.95711 1.02924 0.85904 1.20913 0.89162 0.93450 0.98900 1.19096 0.98215 1.19025 0.91672 1.20849 0.85102 0.73372 0.83455 1.90566 1.22065 1.46096 1.84681 1.86524 1.45677 1.77205 1.17235 1.23607 0.92849 1.02914 0.87029 0.94654 0.92781 0.92458 0.92238 0.94191 0.92711 0.74642 0.79479 0.92221 0.91728 0.85826 0.81408 0.92015 0.92350 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 8.54 71.98 0.61 -4.12 16 2 C -0.11 -5.10 5.58 30.59 0.17 -4.93 16 3 C 0.24 12.73 1.91 44.24 0.08 12.82 16 4 H 0.03 1.91 6.05 -2.39 -0.01 1.89 16 5 C -0.62 -35.20 8.50 25.60 0.22 -34.98 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C -0.02 -0.87 5.46 84.65 0.46 -0.41 16 8 N -0.92 -56.65 13.62 21.45 0.29 -56.36 16 9 Si 1.12 50.98 29.90 68.60 2.05 53.03 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 N -0.68 -33.86 5.03 -327.42 -1.65 -35.50 16 14 C 0.42 18.38 5.89 133.60 0.79 19.17 16 15 N -0.53 -21.40 6.87 -192.06 -1.32 -22.72 16 16 C 0.12 3.80 10.21 84.83 0.87 4.67 16 17 C -0.02 -0.52 6.70 22.52 0.15 -0.37 16 18 O -0.32 -7.70 10.51 -93.81 -0.99 -8.68 16 19 C 0.02 0.23 9.82 113.37 1.11 1.34 16 20 C 0.00 0.07 9.68 22.83 0.22 0.29 16 21 C -0.27 -10.32 5.90 -19.90 -0.12 -10.44 16 22 C 0.52 19.85 7.88 70.20 0.55 20.41 16 23 O -0.54 -23.90 13.45 19.76 0.27 -23.63 16 24 O -0.35 -10.38 9.90 -56.86 -0.56 -10.94 16 25 C 0.03 0.63 10.57 113.37 1.20 1.83 16 26 H 0.03 1.40 5.70 -2.39 -0.01 1.38 16 27 H 0.05 2.07 7.84 -2.39 -0.02 2.05 16 28 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.26 16.64 6.70 -92.71 -0.62 16.02 16 32 H 0.41 21.32 5.09 -94.77 -0.48 20.84 16 33 H 0.19 4.38 6.28 -2.91 -0.02 4.36 16 34 H 0.06 0.84 7.67 -2.39 -0.02 0.83 16 35 H 0.06 0.83 7.67 -2.39 -0.02 0.82 16 36 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.17 4.30 7.71 -2.91 -0.02 4.28 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -71.66 332.72 5.15 -66.52 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.73 Total: 33.02 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 6.32 Total: 5.28 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -2.68 Total: -114.58 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.28 Total: -43.26 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.03 kcal Total: -71.66 5.15 -66.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.619 kcal (2) G-P(sol) polarization free energy of solvation -71.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds