Wall clock time and date at job start Tue Mar 31 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47641 * 2 1 4 4 C 1.52999 * 109.47036 * 120.00500 * 2 1 3 5 5 H 1.09002 * 109.46790 * 299.99139 * 4 2 1 6 6 C 1.52996 * 109.47360 * 179.97438 * 4 2 1 7 7 O 1.42907 * 109.46844 * 304.99436 * 6 4 2 8 8 N 1.46496 * 109.47294 * 59.99056 * 4 2 1 9 9 C 1.37664 * 119.99795 * 205.00155 * 8 4 2 10 10 C 1.40176 * 119.81301 * 0.02562 * 9 8 4 11 11 C 1.35808 * 120.19223 * 179.97438 * 10 9 8 12 12 C 1.41751 * 119.80104 * 0.23519 * 11 10 9 13 13 C 1.39510 * 120.18261 * 179.72233 * 12 11 10 14 14 H 1.08011 * 119.99792 * 144.00636 * 13 12 11 15 15 C 1.46584 * 120.00360 * 324.00784 * 13 12 11 16 16 N 1.29494 * 120.00053 * 170.75554 * 15 13 12 17 17 Si 1.86798 * 120.00058 * 350.76108 * 15 13 12 18 18 H 1.48493 * 109.47442 * 88.55220 * 17 15 13 19 19 H 1.48498 * 109.47402 * 208.55655 * 17 15 13 20 20 H 1.48507 * 109.46990 * 328.55392 * 17 15 13 21 21 C 1.41722 * 119.62838 * 359.49608 * 12 11 10 22 22 N 1.48019 * 120.09682 * 180.25411 * 21 12 11 23 23 O 1.31693 * 120.00043 * 174.09685 * 22 21 12 24 24 O 1.31705 * 119.99617 * 354.08949 * 22 21 12 25 25 C 1.35829 * 119.80582 * 0.52587 * 21 12 11 26 26 H 1.09002 * 109.46628 * 300.00262 * 1 2 3 27 27 H 1.09003 * 109.46588 * 59.99391 * 1 2 3 28 28 H 1.08994 * 109.47627 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46628 * 239.99738 * 2 1 3 30 30 H 1.09004 * 109.47074 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46908 * 300.00168 * 3 2 1 32 32 H 1.08996 * 109.47139 * 59.99798 * 3 2 1 33 33 H 1.08998 * 109.47280 * 64.99072 * 6 4 2 34 34 H 1.09001 * 109.47146 * 184.99676 * 6 4 2 35 35 H 0.96698 * 113.99855 * 180.02562 * 7 6 4 36 36 H 0.96994 * 120.00198 * 25.01017 * 8 4 2 37 37 H 1.08000 * 119.90820 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.10087 * 179.97438 * 11 10 9 39 39 H 0.97007 * 119.99954 * 179.97438 * 16 15 13 40 40 H 1.08003 * 119.90087 * 179.75070 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5699 -0.7220 1.2489 7 8 4.0458 -1.2918 0.0278 8 7 1.5515 -2.1025 1.2492 9 6 1.4200 -2.7860 2.4369 10 6 1.7541 -2.1565 3.6440 11 6 1.6269 -2.8234 4.8201 12 6 1.1593 -4.1616 4.8242 13 6 1.0311 -4.8561 6.0274 14 1 0.2163 -5.5516 6.1652 15 6 2.0021 -4.6420 7.1044 16 7 1.7878 -5.1441 8.2786 17 14 3.5485 -3.6445 6.7832 18 1 3.2735 -2.2082 7.0407 19 1 4.6337 -4.1100 7.6836 20 1 3.9676 -3.8226 5.3697 21 6 0.8184 -4.7884 3.5997 22 7 0.3237 -6.1834 3.5925 23 8 -0.1022 -6.7252 2.4703 24 8 0.3097 -6.8829 4.7083 25 6 0.9520 -4.1070 2.4323 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1302 1.4423 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 3.9337 0.3016 1.3382 34 1 3.9332 -1.3114 2.0908 35 1 5.0097 -1.3248 -0.0414 36 1 1.3208 -2.5353 0.4124 37 1 2.1138 -1.1382 3.6387 38 1 1.8852 -2.3371 5.7492 39 1 2.4305 -5.0027 8.9913 40 1 0.6964 -4.5845 1.4979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161740803.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:35 Heat of formation + Delta-G solvation = -17.464261 kcal Electronic energy + Delta-G solvation = -24076.381341 eV Core-core repulsion = 20473.897589 eV Total energy + Delta-G solvation = -3602.483752 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.40237 -38.08110 -36.41934 -35.56891 -34.56753 -33.31142 -32.40757 -30.66356 -29.93331 -28.47656 -27.04844 -25.44025 -24.07638 -22.86565 -22.00648 -20.51009 -19.58393 -18.29642 -17.55075 -17.03788 -16.47637 -15.89905 -15.65710 -15.14411 -14.94255 -14.59264 -14.24957 -14.10144 -13.74191 -13.37746 -13.15364 -13.07381 -12.81676 -12.65775 -12.41211 -12.27243 -11.93953 -11.55368 -11.40668 -11.13846 -11.03976 -10.89538 -10.75314 -10.52831 -10.34696 -9.98467 -9.89126 -9.40774 -9.29840 -8.98968 -8.88317 -8.44980 -7.66300 -7.04576 -4.79459 0.91906 2.30069 2.60158 2.67156 2.84805 2.87428 3.17412 3.44193 3.91590 3.92843 4.28208 4.62844 4.75544 4.84904 4.99845 5.24713 5.33642 5.39764 5.49226 5.52054 5.56135 5.67049 5.74483 5.76929 5.84239 5.96075 6.01790 6.16888 6.21055 6.29127 6.34017 6.51563 6.72447 6.91008 7.08226 7.23816 7.44295 7.56449 7.73137 7.93722 8.09151 8.19165 8.36349 8.86761 9.22043 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.005247 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.500764 B = 5335.416110 C = 6395.979112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.144 4.144 4 C 0.166 3.834 5 H 0.085 0.915 6 C 0.055 3.945 7 O -0.564 6.564 8 N -0.734 5.734 9 C 0.112 3.888 10 C -0.112 4.112 11 C -0.157 4.157 12 C 0.045 3.955 13 C -0.302 4.302 14 H 0.134 0.866 15 C 0.062 3.938 16 N -0.714 5.714 17 Si 0.920 3.080 18 H -0.255 1.255 19 H -0.275 1.275 20 H -0.235 1.235 21 C -0.059 4.059 22 N 0.035 4.965 23 O -0.363 6.363 24 O -0.278 6.278 25 C -0.109 4.109 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.373 0.627 36 H 0.395 0.605 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.307 0.693 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.624 16.128 -7.043 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.202 4.202 4 C 0.059 3.941 5 H 0.103 0.897 6 C -0.025 4.025 7 O -0.368 6.368 8 N -0.367 5.367 9 C 0.010 3.990 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.039 3.961 13 C -0.330 4.330 14 H 0.151 0.849 15 C -0.170 4.170 16 N -0.334 5.334 17 Si 0.743 3.257 18 H -0.181 1.181 19 H -0.201 1.201 20 H -0.158 1.158 21 C -0.162 4.162 22 N 0.450 4.550 23 O -0.503 6.503 24 O -0.436 6.436 25 C -0.135 4.135 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.218 0.782 36 H 0.229 0.771 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.061 16.294 -6.955 18.725 hybrid contribution 1.007 -0.156 -0.025 1.020 sum 7.069 16.138 -6.980 18.951 Atomic orbital electron populations 1.21823 0.94849 1.02385 1.01284 1.21233 0.95912 0.96006 0.98534 1.21832 1.01084 0.95551 1.01730 1.20872 0.90619 0.84112 0.98533 0.89674 1.22894 0.96389 0.96297 0.86925 1.86485 1.26048 1.85231 1.39019 1.43544 1.75240 1.12256 1.05705 1.16986 1.04677 0.91175 0.86119 1.20393 1.02298 0.98999 0.91594 1.20872 1.05793 0.93827 0.97217 1.17143 0.95548 0.92114 0.91272 1.21969 1.05465 1.13958 0.91632 0.84867 1.28166 1.01473 0.94043 0.93348 1.68932 1.35029 1.27112 1.02303 0.86163 0.78307 0.79323 0.81901 1.18066 1.20133 1.15771 1.19223 1.21149 0.81210 0.94625 1.49628 1.00519 1.03556 1.01322 1.96055 1.59944 1.76267 1.18006 1.96081 1.65392 1.64434 1.17734 1.19428 1.04184 0.92973 0.96881 0.92805 0.93036 0.92056 0.90009 0.92462 0.92589 0.92752 0.93575 0.93270 0.78158 0.77063 0.87093 0.86231 0.88050 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.04 37.16 0.34 -1.16 16 2 C -0.10 -0.99 2.36 -90.62 -0.21 -1.20 16 3 C -0.14 -1.19 8.84 37.16 0.33 -0.87 16 4 C 0.17 1.95 1.63 -67.93 -0.11 1.84 16 5 H 0.09 0.99 6.42 -51.93 -0.33 0.66 16 6 C 0.05 0.59 6.24 37.16 0.23 0.83 16 7 O -0.56 -6.26 12.73 -35.23 -0.45 -6.71 16 8 N -0.73 -10.81 4.42 -52.03 -0.23 -11.04 16 9 C 0.11 2.06 6.65 -83.80 -0.56 1.50 16 10 C -0.11 -1.98 8.69 -39.72 -0.35 -2.32 16 11 C -0.16 -3.15 7.12 -39.11 -0.28 -3.43 16 12 C 0.04 1.07 5.11 -106.75 -0.55 0.53 16 13 C -0.30 -7.59 8.38 -35.74 -0.30 -7.89 16 14 H 0.13 3.75 6.02 -52.48 -0.32 3.43 16 15 C 0.06 1.39 5.65 -15.17 -0.09 1.31 16 16 N -0.71 -15.92 13.89 55.99 0.78 -15.14 16 17 Si 0.92 16.90 24.63 -169.99 -4.19 12.71 16 18 H -0.26 -4.22 6.64 56.52 0.38 -3.85 16 19 H -0.28 -4.81 7.11 56.52 0.40 -4.41 16 20 H -0.24 -4.56 6.90 56.52 0.39 -4.17 16 21 C -0.06 -1.49 6.89 -79.48 -0.55 -2.04 16 22 N 0.03 1.00 4.98 34.19 0.17 1.17 16 23 O -0.36 -10.68 19.14 -31.56 -0.60 -11.28 16 24 O -0.28 -8.36 16.27 -31.57 -0.51 -8.87 16 25 C -0.11 -2.41 9.35 -39.73 -0.37 -2.78 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 29 H 0.08 0.92 7.56 -51.93 -0.39 0.52 16 30 H 0.06 0.46 6.55 -51.93 -0.34 0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.40 6.71 -51.93 -0.35 0.05 16 34 H 0.05 0.61 7.73 -51.93 -0.40 0.21 16 35 H 0.37 2.67 9.12 45.56 0.42 3.08 16 36 H 0.40 5.72 8.37 -40.82 -0.34 5.38 16 37 H 0.11 1.59 6.11 -52.49 -0.32 1.27 16 38 H 0.12 2.19 4.87 -52.49 -0.26 1.94 16 39 H 0.31 5.86 8.27 -40.82 -0.34 5.52 16 40 H 0.12 2.63 7.55 -52.48 -0.40 2.23 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -30.60 327.93 -6.83 -37.43 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.28 Total: 12.48 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.46 Total: -15.69 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.72 Total: -25.01 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.57 Total: -26.86 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -4.19 Total: 12.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.60 -6.83 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161740803.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.970 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds