Wall clock time and date at job start Tue Mar 31 2020 07:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46587 * 2 1 4 4 O 1.45200 * 109.46821 * 119.99307 * 2 1 3 5 5 C 1.34231 * 116.99566 * 150.00600 * 4 2 1 6 6 O 1.20829 * 120.00222 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99777 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.47237 * 59.99964 * 7 5 4 9 9 C 1.53002 * 109.47171 * 299.99475 * 7 5 4 10 10 N 1.46502 * 109.47161 * 180.02562 * 7 5 4 11 11 C 1.39126 * 119.99994 * 205.00094 * 10 7 5 12 12 C 1.39165 * 119.63212 * 359.97438 * 11 10 7 13 13 C 1.38207 * 119.17081 * 180.02562 * 12 11 10 14 14 C 1.39448 * 118.44946 * 0.02562 * 13 12 11 15 15 O 1.35814 * 120.40313 * 179.97438 * 14 13 12 16 16 C 1.34806 * 117.00125 * 5.47984 * 15 14 13 17 17 H 1.08004 * 120.00129 * 354.94696 * 16 15 14 18 18 C 1.38627 * 120.00171 * 174.93965 * 16 15 14 19 19 N 1.31575 * 120.00063 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99839 * 359.72899 * 18 16 15 21 21 H 1.48499 * 109.47040 * 270.27040 * 20 18 16 22 22 H 1.48495 * 109.47103 * 30.27495 * 20 18 16 23 23 H 1.48502 * 109.46959 * 150.27291 * 20 18 16 24 24 C 1.38669 * 119.19241 * 0.25726 * 14 13 12 25 25 N 1.31933 * 120.75393 * 359.46503 * 24 14 13 26 26 H 1.08997 * 109.47779 * 299.99990 * 1 2 3 27 27 H 1.08999 * 109.47074 * 60.00710 * 1 2 3 28 28 H 1.09004 * 109.46664 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47417 * 240.00079 * 2 1 3 30 30 H 1.08999 * 109.46833 * 299.99437 * 3 2 1 31 31 H 1.08989 * 109.47630 * 59.99663 * 3 2 1 32 32 H 1.09007 * 109.46870 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47439 * 300.00364 * 9 7 5 34 34 H 1.08999 * 109.46551 * 60.00221 * 9 7 5 35 35 H 1.09000 * 109.46943 * 179.97438 * 9 7 5 36 36 H 0.97003 * 120.00292 * 24.99478 * 10 7 5 37 37 H 1.08003 * 120.41235 * 0.04661 * 12 11 10 38 38 H 1.08003 * 120.77627 * 179.97438 * 13 12 11 39 39 H 0.97005 * 119.99977 * 179.73138 * 19 18 16 40 40 H 1.07997 * 119.61968 * 179.74651 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0139 -0.6844 1.1857 5 6 3.1937 -1.3168 1.0853 6 8 3.8020 -1.2987 0.0415 7 6 3.7594 -2.0494 2.2745 8 1 3.0663 -2.8322 2.5825 9 6 3.9641 -1.0663 3.4290 10 7 5.0454 -2.6501 1.9116 11 6 5.5121 -3.7644 2.6016 12 6 4.7514 -4.3018 3.6356 13 6 5.2243 -5.4085 4.3150 14 6 6.4537 -5.9459 3.9350 15 8 6.9563 -7.0327 4.5760 16 6 6.1672 -7.6184 5.4987 17 1 5.2178 -7.1735 5.7580 18 6 6.5740 -8.7918 6.1146 19 7 5.8035 -9.3636 7.0149 20 14 8.2126 -9.5654 5.6605 21 1 8.0177 -10.5110 4.5321 22 1 9.1669 -8.5021 5.2561 23 1 8.7556 -10.2984 6.8323 24 6 7.1596 -5.3536 2.8988 25 7 6.6756 -4.3006 2.2682 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9565 0.8898 32 1 3.1300 1.4427 -0.0005 33 1 4.6572 -0.2835 3.1210 34 1 3.0076 -0.6190 3.6991 35 1 4.3729 -1.5963 4.2893 36 1 5.5714 -2.2709 1.1901 37 1 3.8031 -3.8597 3.9036 38 1 4.6555 -5.8464 5.1219 39 1 6.0865 -10.1868 7.4431 40 1 8.1143 -5.7616 2.6016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163402013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:25 Heat of formation + Delta-G solvation = -90.092979 kcal Electronic energy + Delta-G solvation = -22944.751338 eV Core-core repulsion = 19339.118169 eV Total energy + Delta-G solvation = -3605.633169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94231 -41.30056 -39.36430 -38.19042 -36.73686 -34.43446 -34.18933 -33.02053 -32.10126 -29.44597 -28.20289 -27.09537 -25.96543 -24.78532 -23.47421 -22.36668 -21.40931 -20.23649 -19.43040 -18.81163 -18.14937 -17.80063 -17.25364 -16.91997 -16.29600 -16.00933 -15.86249 -15.56398 -15.07456 -14.92386 -14.63460 -14.49405 -14.30094 -14.25183 -13.94331 -13.68400 -13.46706 -13.25764 -13.16376 -13.10885 -12.77217 -12.74577 -12.66010 -12.08686 -11.92892 -11.65289 -11.62057 -11.45792 -11.12489 -10.72504 -10.50334 -10.43021 -8.45491 -8.42324 -6.14533 0.32274 0.62522 0.99370 1.29132 1.36731 1.40008 1.56773 2.24913 2.32510 2.82811 3.07428 3.18973 3.43999 3.72700 3.79716 3.91659 3.94641 4.00000 4.04837 4.13305 4.15614 4.31409 4.65354 4.71536 4.71744 4.75743 4.82469 4.84786 4.85337 5.02547 5.12084 5.21264 5.21931 5.33819 5.38100 5.42190 5.66751 5.95973 6.09680 6.52456 6.61023 6.89355 7.21180 7.63105 8.65911 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.037296 B = 0.002736 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.575009 B =10232.456017 C =10600.025129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 C -0.167 4.167 4 O -0.345 6.345 5 C 0.467 3.533 6 O -0.529 6.529 7 C 0.166 3.834 8 H 0.130 0.870 9 C -0.158 4.158 10 N -0.718 5.718 11 C 0.338 3.662 12 C -0.180 4.180 13 C -0.140 4.140 14 C 0.033 3.967 15 O -0.240 6.240 16 C -0.395 4.395 17 H 0.085 0.915 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.260 1.260 23 H -0.271 1.271 24 C 0.079 3.921 25 N -0.514 5.514 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.406 0.594 37 H 0.160 0.840 38 H 0.134 0.866 39 H 0.283 0.717 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 20.750 -11.068 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 C -0.224 4.224 4 O -0.261 6.261 5 C 0.310 3.690 6 O -0.419 6.419 7 C 0.059 3.941 8 H 0.148 0.852 9 C -0.217 4.217 10 N -0.358 5.358 11 C 0.104 3.896 12 C -0.204 4.204 13 C -0.167 4.167 14 C -0.020 4.020 15 O -0.147 6.147 16 C -0.471 4.471 17 H 0.103 0.897 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.185 1.185 23 H -0.196 1.196 24 C -0.079 4.079 25 N -0.231 5.231 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.243 0.757 37 H 0.177 0.823 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.562 20.900 -11.869 25.867 hybrid contribution 0.246 -0.913 0.353 1.010 sum -9.316 19.986 -11.516 24.877 Atomic orbital electron populations 1.21917 0.90098 1.03585 1.04617 1.23076 0.96670 0.93035 0.85697 1.22210 1.01033 0.94495 1.04639 1.86551 1.35152 1.62192 1.42164 1.23818 0.79637 0.76096 0.89428 1.90660 1.60204 1.59371 1.31617 1.20442 0.86167 0.96858 0.90614 0.85217 1.22238 1.04523 0.98499 0.96419 1.43864 1.21317 1.30414 1.40213 1.18097 0.90406 0.89288 0.91853 1.21430 1.02400 0.98423 0.98153 1.21608 0.96318 0.97275 1.01497 1.20368 0.95128 0.90818 0.95637 1.83530 1.42205 1.38965 1.49958 1.20683 1.02502 1.07655 1.16273 0.89746 1.25199 1.02482 0.95790 0.95317 1.69731 1.39107 1.20341 1.27324 0.85266 0.78925 0.78719 0.78176 1.19354 1.18451 1.19578 1.21689 1.00603 0.93017 0.92542 1.67019 1.13809 1.12164 1.30074 0.90449 0.88341 0.91923 0.91142 0.88764 0.90378 0.93707 0.91878 0.88052 0.90536 0.75729 0.82294 0.84882 0.90707 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.57 71.98 0.69 -0.64 16 2 C 0.07 1.02 3.18 30.60 0.10 1.12 16 3 C -0.17 -1.97 9.55 71.98 0.69 -1.29 16 4 O -0.34 -6.19 9.78 -51.43 -0.50 -6.69 16 5 C 0.47 10.18 7.30 71.24 0.52 10.70 16 6 O -0.53 -14.65 15.06 21.95 0.33 -14.32 16 7 C 0.17 3.38 2.77 44.25 0.12 3.50 16 8 H 0.13 2.32 6.45 -2.39 -0.02 2.30 16 9 C -0.16 -2.55 9.34 71.98 0.67 -1.88 16 10 N -0.72 -19.47 5.12 -327.98 -1.68 -21.15 16 11 C 0.34 11.25 7.63 133.03 1.02 12.27 16 12 C -0.18 -5.87 8.83 22.49 0.20 -5.68 16 13 C -0.14 -5.72 9.25 22.55 0.21 -5.52 16 14 C 0.03 1.48 6.67 22.66 0.15 1.63 16 15 O -0.24 -12.54 8.59 -23.21 -0.20 -12.74 16 16 C -0.39 -22.35 9.96 67.91 0.68 -21.67 16 17 H 0.09 4.91 5.49 -2.91 -0.02 4.90 16 18 C 0.01 0.59 5.49 84.82 0.47 1.05 16 19 N -0.92 -54.02 13.96 21.61 0.30 -53.72 16 20 Si 0.97 44.66 28.62 68.60 1.96 46.62 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.08 3.17 11.14 84.78 0.94 4.12 16 25 N -0.51 -19.36 10.39 -192.67 -2.00 -21.36 16 26 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 1.26 7.16 -2.39 -0.02 1.24 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.69 8.14 -2.38 -0.02 0.68 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16 35 H 0.08 1.34 7.65 -2.39 -0.02 1.32 16 36 H 0.41 11.57 7.92 -92.71 -0.73 10.83 16 37 H 0.16 3.90 6.06 -2.91 -0.02 3.88 16 38 H 0.13 5.72 5.76 -2.91 -0.02 5.70 16 39 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 40 H 0.17 6.03 8.06 -2.91 -0.02 6.01 16 Total: -1.00 -67.54 341.47 5.00 -62.55 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.34 Total: 23.09 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 6.45 Total: -2.29 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -3.38 Total: -96.22 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.37 Total: -33.75 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.96 Total: 46.62 kcal Total: -67.54 5.00 -62.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163402013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.545 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds