Wall clock time and date at job start Tue Mar 31 2020 06:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00034 * 2 1 4 4 C 1.52997 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47052 * 59.99774 * 4 3 2 6 6 C 1.53001 * 109.47289 * 299.99889 * 4 3 2 7 7 N 1.46498 * 109.47082 * 179.97438 * 4 3 2 8 8 C 1.39673 * 119.99901 * 185.69583 * 7 4 3 9 9 C 1.38173 * 119.99142 * 352.99343 * 8 7 4 10 10 C 1.41134 * 119.50878 * 180.02562 * 9 8 7 11 11 C 1.40350 * 120.25487 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99825 * 20.51967 * 11 10 9 13 13 C 1.46518 * 120.00058 * 200.52151 * 11 10 9 14 14 N 1.29514 * 120.00211 * 15.44537 * 13 11 10 15 15 Si 1.86803 * 120.00180 * 195.45048 * 13 11 10 16 16 H 1.48506 * 109.46885 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47405 * 119.99938 * 15 13 11 18 18 H 1.48505 * 109.47227 * 239.99975 * 15 13 11 19 19 C 1.41336 * 119.48960 * 359.72993 * 10 9 8 20 20 C 1.36492 * 119.96449 * 0.52146 * 19 10 9 21 21 C 1.38661 * 120.50040 * 359.47264 * 20 19 10 22 22 N 1.48020 * 119.74038 * 180.25393 * 21 20 19 23 23 O 1.31698 * 120.00214 * 353.00777 * 22 21 20 24 24 O 1.31699 * 119.99923 * 173.00759 * 22 21 20 25 25 H 1.09005 * 109.46858 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47257 * 299.99718 * 1 2 3 27 27 H 1.08997 * 109.47021 * 60.00650 * 1 2 3 28 28 H 1.09006 * 109.47011 * 59.99631 * 3 2 1 29 29 H 1.09002 * 109.46897 * 300.00029 * 3 2 1 30 30 H 1.08996 * 109.46964 * 173.82196 * 5 4 3 31 31 H 1.08996 * 109.47302 * 293.82794 * 5 4 3 32 32 H 1.08999 * 109.46567 * 53.82774 * 5 4 3 33 33 H 1.08998 * 109.46926 * 307.81694 * 6 4 3 34 34 H 1.09004 * 109.47023 * 67.80884 * 6 4 3 35 35 H 1.08991 * 109.47150 * 187.81058 * 6 4 3 36 36 H 0.96999 * 120.00522 * 5.70238 * 7 4 3 37 37 H 1.08005 * 120.24574 * 359.97438 * 9 8 7 38 38 H 0.96998 * 120.00567 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.01756 * 180.29467 * 19 10 9 40 40 H 1.07997 * 119.74785 * 179.75574 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9875 0.4251 -1.2483 6 6 3.9865 0.4256 1.2502 7 7 4.1313 2.5230 0.0000 8 6 5.5149 2.6714 -0.1196 9 6 6.3339 1.5588 -0.0916 10 6 7.7307 1.7206 -0.2128 11 6 8.5771 0.6014 -0.1859 12 1 8.1821 -0.3797 -0.4045 13 6 9.9966 0.7641 0.1387 14 7 10.4142 1.8610 0.6861 15 14 11.2042 -0.6107 -0.2370 16 1 10.4804 -1.7497 -0.8569 17 1 12.2431 -0.1145 -1.1750 18 1 11.8491 -1.0612 1.0226 19 6 8.2701 3.0179 -0.3667 20 6 7.4419 4.1026 -0.3864 21 6 6.0697 3.9427 -0.2673 22 7 5.1867 5.1303 -0.2965 23 8 5.7089 6.3393 -0.2962 24 8 3.8788 4.9780 -0.3227 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 5.0759 0.4340 -1.3048 31 1 3.6347 -0.6048 -1.1947 32 1 3.5736 0.9052 -2.1350 33 1 3.5483 0.8886 2.1344 34 1 3.6588 -0.6118 1.1832 35 1 5.0734 0.4593 1.3232 36 1 3.5649 3.3061 0.0828 37 1 5.9083 0.5728 0.0229 38 1 11.3538 1.9686 0.9014 39 1 9.3374 3.1511 -0.4650 40 1 7.8581 5.0926 -0.5003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166038148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:16 Heat of formation + Delta-G solvation = -1.957987 kcal Electronic energy + Delta-G solvation = -24258.203350 eV Core-core repulsion = 20656.392000 eV Total energy + Delta-G solvation = -3601.811349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.55258 -38.12575 -36.85644 -36.15929 -34.24542 -33.00135 -31.54758 -30.56930 -28.30142 -27.41091 -26.89465 -26.80175 -25.20970 -23.71431 -21.43851 -20.97991 -19.48396 -18.13720 -17.10820 -16.70476 -16.45446 -15.98600 -15.82233 -15.65404 -14.92329 -14.55846 -14.28068 -13.81085 -13.63479 -13.56511 -13.34049 -12.65237 -12.48823 -12.08300 -11.96694 -11.78155 -11.72513 -11.64139 -11.53033 -11.30660 -11.12181 -10.84938 -10.72452 -10.48971 -10.02192 -9.76967 -9.71060 -9.59983 -9.50273 -9.42344 -9.23658 -8.29146 -7.67932 -6.81756 -5.16784 0.85221 2.35548 2.62126 2.70569 2.79677 2.87073 2.89003 3.30610 3.44520 3.86584 4.39525 4.95132 5.00018 5.10459 5.27240 5.28235 5.34748 5.55116 5.60610 5.70923 5.79214 5.99082 6.08012 6.13087 6.22899 6.26053 6.30621 6.38211 6.49562 6.60663 6.68929 6.77749 6.86992 7.08828 7.16423 7.27537 7.32872 7.54473 7.72634 7.94415 8.07339 8.32363 8.36858 8.62031 9.14292 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.005420 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.337429 B = 5164.409665 C = 7019.849708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.065 3.935 4 C 0.180 3.820 5 C -0.174 4.174 6 C -0.171 4.171 7 N -0.727 5.727 8 C 0.310 3.690 9 C -0.328 4.328 10 C 0.132 3.868 11 C -0.368 4.368 12 H 0.103 0.897 13 C 0.061 3.939 14 N -0.710 5.710 15 Si 0.931 3.069 16 H -0.248 1.248 17 H -0.261 1.261 18 H -0.264 1.264 19 C -0.169 4.169 20 C -0.043 4.043 21 C -0.147 4.147 22 N 0.059 4.941 23 O -0.315 6.315 24 O -0.348 6.348 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.410 0.590 37 H 0.137 0.863 38 H 0.304 0.696 39 H 0.139 0.861 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -9.266 -0.358 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.012 4.012 4 C 0.092 3.908 5 C -0.232 4.232 6 C -0.229 4.229 7 N -0.374 5.374 8 C 0.201 3.799 9 C -0.354 4.354 10 C 0.127 3.873 11 C -0.393 4.393 12 H 0.121 0.879 13 C -0.172 4.172 14 N -0.329 5.329 15 Si 0.752 3.248 16 H -0.171 1.171 17 H -0.186 1.186 18 H -0.188 1.188 19 C -0.191 4.191 20 C -0.064 4.064 21 C -0.255 4.255 22 N 0.473 4.527 23 O -0.471 6.471 24 O -0.488 6.488 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.260 0.740 37 H 0.154 0.846 38 H 0.117 0.883 39 H 0.156 0.844 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.721 -9.494 -0.248 10.200 hybrid contribution -0.222 0.592 0.034 0.633 sum -3.943 -8.902 -0.214 9.739 Atomic orbital electron populations 1.22733 0.81232 1.02525 0.99981 1.87835 1.19329 1.27287 1.95430 1.22582 0.93240 0.84671 1.00703 1.19950 0.90151 0.84260 0.96413 1.22468 1.04591 0.99818 0.96278 1.22462 1.03964 0.99991 0.96516 1.45953 1.04555 1.08041 1.78815 1.17123 0.83373 0.90868 0.88498 1.20832 0.92632 0.96089 1.25881 1.17699 0.91300 0.92859 0.85452 1.21533 0.90818 0.96100 1.30896 0.87923 1.27901 1.00158 0.97497 0.91597 1.69103 1.19490 1.25226 1.19077 0.85846 0.78874 0.80164 0.79941 1.17095 1.18578 1.18820 1.21332 0.99840 0.91106 1.06808 1.20013 0.89459 0.99738 0.97149 1.19634 0.89546 0.80715 1.35570 1.49907 1.01890 1.03672 0.97205 1.96108 1.78639 1.07745 1.64570 1.95691 0.93277 1.92429 1.67387 0.89663 0.94184 0.94139 0.92974 0.92715 0.89180 0.91629 0.93058 0.93143 0.91620 0.89668 0.73958 0.84623 0.88296 0.84390 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.15 9.62 -35.23 -0.34 -5.48 16 3 C 0.07 0.95 4.92 37.16 0.18 1.14 16 4 C 0.18 2.97 0.89 -131.82 -0.12 2.85 16 5 C -0.17 -2.78 7.97 37.16 0.30 -2.48 16 6 C -0.17 -2.71 8.07 37.16 0.30 -2.41 16 7 N -0.73 -14.52 5.07 -46.03 -0.23 -14.75 16 8 C 0.31 6.86 6.22 -83.84 -0.52 6.34 16 9 C -0.33 -6.86 6.36 -38.51 -0.25 -7.10 16 10 C 0.13 2.87 5.65 -106.83 -0.60 2.27 16 11 C -0.37 -7.39 9.33 -35.45 -0.33 -7.72 16 12 H 0.10 1.89 7.98 -52.49 -0.42 1.48 16 13 C 0.06 1.13 5.39 -15.19 -0.08 1.04 16 14 N -0.71 -13.75 10.72 55.98 0.60 -13.15 16 15 Si 0.93 13.57 29.67 -169.99 -5.04 8.52 16 16 H -0.25 -3.60 7.11 56.52 0.40 -3.20 16 17 H -0.26 -3.80 7.11 56.52 0.40 -3.40 16 18 H -0.26 -3.83 7.11 56.52 0.40 -3.42 16 19 C -0.17 -3.77 8.76 -39.03 -0.34 -4.12 16 20 C -0.04 -1.01 9.50 -40.06 -0.38 -1.39 16 21 C -0.15 -3.58 6.92 -79.32 -0.55 -4.13 16 22 N 0.06 1.54 4.98 34.27 0.17 1.71 16 23 O -0.32 -8.62 19.15 -31.57 -0.60 -9.22 16 24 O -0.35 -8.97 16.31 -31.57 -0.51 -9.49 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.55 4.55 -51.93 -0.24 1.31 16 31 H 0.06 0.94 7.85 -51.93 -0.41 0.54 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.06 0.94 7.89 -51.93 -0.41 0.53 16 35 H 0.08 1.46 4.88 -51.93 -0.25 1.21 16 36 H 0.41 8.67 4.81 -41.62 -0.20 8.47 16 37 H 0.14 2.58 3.61 -52.48 -0.19 2.39 16 38 H 0.30 5.09 8.27 -40.82 -0.34 4.75 16 39 H 0.14 3.01 5.81 -52.48 -0.30 2.71 16 40 H 0.12 2.67 7.57 -52.49 -0.40 2.27 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -26.75 328.03 -7.21 -33.96 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -4.91 Total: 17.23 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -1.28 Total: -14.27 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.54 Total: -26.19 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.46 Total: -24.20 kcal Atomic # 14 Polarization: 13.57 SS G_CDS: -5.04 Total: 8.52 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.75 -7.21 -33.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166038148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.000 kcal (2) G-P(sol) polarization free energy of solvation -26.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds