Wall clock time and date at job start Tue Mar 31 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00034 * 2 1 4 4 C 1.52997 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47052 * 59.99774 * 4 3 2 6 6 C 1.53001 * 109.47289 * 299.99889 * 4 3 2 7 7 N 1.46498 * 109.47082 * 179.97438 * 4 3 2 8 8 C 1.39673 * 119.99901 * 185.69583 * 7 4 3 9 9 C 1.38173 * 119.99142 * 352.99343 * 8 7 4 10 10 C 1.41134 * 119.50878 * 180.02562 * 9 8 7 11 11 C 1.40350 * 120.25487 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99825 * 20.51967 * 11 10 9 13 13 C 1.46518 * 120.00058 * 200.52151 * 11 10 9 14 14 N 1.29514 * 120.00211 * 15.44537 * 13 11 10 15 15 Si 1.86803 * 120.00180 * 195.45048 * 13 11 10 16 16 H 1.48506 * 109.46885 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47405 * 119.99938 * 15 13 11 18 18 H 1.48505 * 109.47227 * 239.99975 * 15 13 11 19 19 C 1.41336 * 119.48960 * 359.72993 * 10 9 8 20 20 C 1.36492 * 119.96449 * 0.52146 * 19 10 9 21 21 C 1.38661 * 120.50040 * 359.47264 * 20 19 10 22 22 N 1.48020 * 119.74038 * 180.25393 * 21 20 19 23 23 O 1.31698 * 120.00214 * 353.00777 * 22 21 20 24 24 O 1.31699 * 119.99923 * 173.00759 * 22 21 20 25 25 H 1.09005 * 109.46858 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47257 * 299.99718 * 1 2 3 27 27 H 1.08997 * 109.47021 * 60.00650 * 1 2 3 28 28 H 1.09006 * 109.47011 * 59.99631 * 3 2 1 29 29 H 1.09002 * 109.46897 * 300.00029 * 3 2 1 30 30 H 1.08996 * 109.46964 * 173.82196 * 5 4 3 31 31 H 1.08996 * 109.47302 * 293.82794 * 5 4 3 32 32 H 1.08999 * 109.46567 * 53.82774 * 5 4 3 33 33 H 1.08998 * 109.46926 * 307.81694 * 6 4 3 34 34 H 1.09004 * 109.47023 * 67.80884 * 6 4 3 35 35 H 1.08991 * 109.47150 * 187.81058 * 6 4 3 36 36 H 0.96999 * 120.00522 * 5.70238 * 7 4 3 37 37 H 1.08005 * 120.24574 * 359.97438 * 9 8 7 38 38 H 0.96998 * 120.00567 * 179.97438 * 14 13 11 39 39 H 1.08005 * 120.01756 * 180.29467 * 19 10 9 40 40 H 1.07997 * 119.74785 * 179.75574 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9875 0.4251 -1.2483 6 6 3.9865 0.4256 1.2502 7 7 4.1313 2.5230 0.0000 8 6 5.5149 2.6714 -0.1196 9 6 6.3339 1.5588 -0.0916 10 6 7.7307 1.7206 -0.2128 11 6 8.5771 0.6014 -0.1859 12 1 8.1821 -0.3797 -0.4045 13 6 9.9966 0.7641 0.1387 14 7 10.4142 1.8610 0.6861 15 14 11.2042 -0.6107 -0.2370 16 1 10.4804 -1.7497 -0.8569 17 1 12.2431 -0.1145 -1.1750 18 1 11.8491 -1.0612 1.0226 19 6 8.2701 3.0179 -0.3667 20 6 7.4419 4.1026 -0.3864 21 6 6.0697 3.9427 -0.2673 22 7 5.1867 5.1303 -0.2965 23 8 5.7089 6.3393 -0.2962 24 8 3.8788 4.9780 -0.3227 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 5.0759 0.4340 -1.3048 31 1 3.6347 -0.6048 -1.1947 32 1 3.5736 0.9052 -2.1350 33 1 3.5483 0.8886 2.1344 34 1 3.6588 -0.6118 1.1832 35 1 5.0734 0.4593 1.3232 36 1 3.5649 3.3061 0.0828 37 1 5.9083 0.5728 0.0229 38 1 11.3538 1.9686 0.9014 39 1 9.3374 3.1511 -0.4650 40 1 7.8581 5.0926 -0.5003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166038148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:15 Heat of formation + Delta-G solvation = -17.144709 kcal Electronic energy + Delta-G solvation = -24258.861895 eV Core-core repulsion = 20656.392000 eV Total energy + Delta-G solvation = -3602.469895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08674 -39.43701 -38.51104 -37.54758 -35.86193 -34.72823 -33.12743 -32.22867 -29.86672 -28.85301 -28.17173 -28.11190 -26.30125 -25.44735 -23.09296 -22.66749 -20.87987 -19.72617 -18.81743 -18.44764 -17.58344 -17.57580 -17.03922 -16.84420 -16.33965 -16.27375 -15.63960 -15.21125 -14.98050 -14.90166 -14.75823 -14.12362 -13.94756 -13.51307 -13.37982 -13.23949 -13.00753 -12.89896 -12.74194 -12.63291 -12.39729 -12.20153 -11.97939 -11.89814 -11.58512 -11.44223 -11.42453 -11.23693 -11.04627 -10.89461 -10.65137 -10.03669 -9.23778 -8.50240 -6.86347 -1.04051 0.79735 1.11734 1.15299 1.41097 1.56010 1.65369 2.08765 2.20237 2.31923 3.13282 3.30127 3.76612 3.87238 3.99130 4.12163 4.36929 4.43237 4.49101 4.50821 4.58240 4.61540 4.62969 4.70507 4.83613 4.84877 4.89137 4.96117 5.02053 5.07566 5.16513 5.36595 5.42485 5.49527 5.60438 5.61721 5.78341 6.03909 6.11439 6.26544 6.32557 6.58968 6.66198 6.96281 7.62264 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.005420 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.337429 B = 5164.409665 C = 7019.849708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.390 6.390 3 C 0.072 3.928 4 C 0.170 3.830 5 C -0.167 4.167 6 C -0.163 4.163 7 N -0.727 5.727 8 C 0.286 3.714 9 C -0.310 4.310 10 C 0.079 3.921 11 C -0.311 4.311 12 H 0.134 0.866 13 C 0.022 3.978 14 N -0.719 5.719 15 Si 1.008 2.992 16 H -0.238 1.238 17 H -0.259 1.259 18 H -0.258 1.258 19 C -0.136 4.136 20 C -0.082 4.082 21 C -0.130 4.130 22 N 0.054 4.946 23 O -0.417 6.417 24 O -0.399 6.399 25 H 0.108 0.892 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.403 0.597 37 H 0.160 0.840 38 H 0.323 0.677 39 H 0.145 0.855 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -15.019 -0.205 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.308 6.308 3 C -0.005 4.005 4 C 0.084 3.916 5 C -0.224 4.224 6 C -0.221 4.221 7 N -0.371 5.371 8 C 0.176 3.824 9 C -0.338 4.338 10 C 0.074 3.926 11 C -0.335 4.335 12 H 0.151 0.849 13 C -0.210 4.210 14 N -0.338 5.338 15 Si 0.824 3.176 16 H -0.160 1.160 17 H -0.183 1.183 18 H -0.182 1.182 19 C -0.158 4.158 20 C -0.102 4.102 21 C -0.246 4.246 22 N 0.438 4.562 23 O -0.546 6.546 24 O -0.524 6.524 25 H 0.126 0.874 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.251 0.749 37 H 0.177 0.823 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.370 -14.976 -0.093 15.039 hybrid contribution -0.385 1.606 0.065 1.653 sum -1.755 -13.370 -0.027 13.484 Atomic orbital electron populations 1.22983 0.79322 1.04239 1.00647 1.87796 1.21344 1.26153 1.95517 1.22390 0.92115 0.85458 1.00553 1.20234 0.91367 0.82666 0.97313 1.22386 1.03734 1.00744 0.95551 1.22373 1.02969 1.00936 0.95850 1.46102 1.03803 1.09350 1.77826 1.17277 0.84631 0.90330 0.90141 1.21018 0.92052 0.96485 1.24261 1.18023 0.92316 0.93120 0.89183 1.22410 0.91588 0.96739 1.22800 0.84879 1.28928 1.00959 0.99916 0.91173 1.69069 1.21550 1.26289 1.16892 0.84712 0.76229 0.76809 0.79846 1.16040 1.18335 1.18240 1.21535 0.99696 0.91224 1.03368 1.20044 0.89602 1.00031 1.00561 1.20196 0.90089 0.81298 1.33044 1.49848 1.01747 1.03488 1.01074 1.96032 1.78769 1.08992 1.70782 1.95605 0.93909 1.92440 1.70441 0.87403 0.93483 0.93587 0.92999 0.93195 0.90191 0.89512 0.93772 0.93396 0.89546 0.90869 0.74879 0.82300 0.86219 0.83798 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.39 -9.73 9.62 -148.98 -1.43 -11.16 16 3 C 0.07 2.07 4.92 71.98 0.35 2.43 16 4 C 0.17 5.49 0.89 3.60 0.00 5.49 16 5 C -0.17 -5.00 7.97 71.98 0.57 -4.43 16 6 C -0.16 -4.82 8.07 71.98 0.58 -4.24 16 7 N -0.73 -29.91 5.07 -299.54 -1.52 -31.43 16 8 C 0.29 12.92 6.22 38.18 0.24 13.16 16 9 C -0.31 -12.44 6.36 22.97 0.15 -12.29 16 10 C 0.08 3.22 5.65 -21.29 -0.12 3.10 16 11 C -0.31 -10.75 9.33 24.94 0.23 -10.52 16 12 H 0.13 3.92 7.98 -2.91 -0.02 3.89 16 13 C 0.02 0.70 5.39 87.19 0.47 1.17 16 14 N -0.72 -24.67 10.72 23.21 0.25 -24.42 16 15 Si 1.01 22.18 29.67 68.60 2.04 24.22 16 16 H -0.24 -4.96 7.11 99.48 0.71 -4.26 16 17 H -0.26 -5.74 7.11 99.48 0.71 -5.03 16 18 H -0.26 -5.61 7.11 99.48 0.71 -4.90 16 19 C -0.14 -5.93 8.76 22.62 0.20 -5.73 16 20 C -0.08 -3.99 9.50 21.96 0.21 -3.79 16 21 C -0.13 -6.73 6.92 36.78 0.25 -6.48 16 22 N 0.05 3.14 4.98 -45.50 -0.23 2.91 16 23 O -0.42 -25.87 19.15 3.52 0.07 -25.80 16 24 O -0.40 -22.80 16.31 3.52 0.06 -22.74 16 25 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 1.47 8.14 -2.38 -0.02 1.46 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 2.55 4.55 -2.39 -0.01 2.54 16 31 H 0.09 2.22 7.85 -2.39 -0.02 2.20 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.09 2.18 7.89 -2.39 -0.02 2.16 16 35 H 0.07 2.32 4.88 -2.39 -0.01 2.31 16 36 H 0.40 18.19 4.81 -105.32 -0.51 17.69 16 37 H 0.16 5.53 3.61 -2.91 -0.01 5.52 16 38 H 0.32 9.32 8.27 -92.71 -0.77 8.55 16 39 H 0.14 6.01 5.81 -2.91 -0.02 5.99 16 40 H 0.11 5.44 7.57 -2.91 -0.02 5.42 16 Total: -1.00 -62.43 328.03 4.19 -58.23 By element: Atomic # 1 Polarization: 50.07 SS G_CDS: 0.58 Total: 50.65 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.39 Total: -20.46 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -1.50 Total: -52.94 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -1.31 Total: -59.70 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: 2.04 Total: 24.22 kcal Total: -62.43 4.19 -58.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166038148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.086 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds