Wall clock time and date at job start Tue Mar 31 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00103 * 2 1 4 4 C 1.52998 * 109.47371 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46968 * 300.00071 * 4 3 2 6 6 C 1.53000 * 109.47036 * 59.99810 * 4 3 2 7 7 N 1.46499 * 109.47390 * 180.02562 * 4 3 2 8 8 C 1.37652 * 120.00122 * 186.26397 * 7 4 3 9 9 C 1.40188 * 119.81409 * 352.75903 * 8 7 4 10 10 C 1.35796 * 120.19326 * 179.97438 * 9 8 7 11 11 C 1.41746 * 119.80665 * 0.02562 * 10 9 8 12 12 C 1.39519 * 120.18918 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99886 * 145.31717 * 12 11 10 14 14 C 1.46590 * 119.99413 * 325.32054 * 12 11 10 15 15 N 1.29492 * 119.99618 * 177.04267 * 14 12 11 16 16 Si 1.86793 * 120.00427 * 357.03695 * 14 12 11 17 17 H 1.48503 * 109.46889 * 91.92999 * 16 14 12 18 18 H 1.48497 * 109.47322 * 211.93055 * 16 14 12 19 19 H 1.48506 * 109.47121 * 331.93089 * 16 14 12 20 20 C 1.41720 * 119.63222 * 359.97438 * 11 10 9 21 21 N 1.48014 * 120.10409 * 179.97438 * 20 11 10 22 22 O 1.31693 * 120.00287 * 183.90569 * 21 20 11 23 23 O 1.31706 * 119.99422 * 3.90958 * 21 20 11 24 24 C 1.35834 * 119.80046 * 359.70277 * 20 11 10 25 25 H 1.08994 * 109.47217 * 59.99736 * 1 2 3 26 26 H 1.09000 * 109.46939 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46920 * 299.99833 * 1 2 3 28 28 H 1.08999 * 109.47070 * 60.00228 * 3 2 1 29 29 H 1.09003 * 109.47538 * 300.00013 * 3 2 1 30 30 H 1.08997 * 109.47081 * 176.37319 * 5 4 3 31 31 H 1.09000 * 109.47104 * 56.37147 * 5 4 3 32 32 H 1.08998 * 109.47071 * 296.37204 * 5 4 3 33 33 H 1.08995 * 109.47278 * 304.87034 * 6 4 3 34 34 H 1.08998 * 109.46797 * 64.87850 * 6 4 3 35 35 H 1.09001 * 109.46635 * 184.87206 * 6 4 3 36 36 H 0.97000 * 119.99772 * 6.25248 * 7 4 3 37 37 H 1.08002 * 119.90103 * 359.97438 * 9 8 7 38 38 H 1.08007 * 120.09721 * 180.02562 * 10 9 8 39 39 H 0.96998 * 120.00018 * 180.02562 * 15 14 12 40 40 H 1.07996 * 119.90725 * 180.28924 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9874 0.4251 1.2483 6 6 3.9864 0.4256 -1.2502 7 7 4.1313 2.5230 0.0000 8 6 5.4938 2.6698 -0.1305 9 6 6.3218 1.5388 -0.1108 10 6 7.6668 1.6747 -0.2394 11 6 8.2330 2.9650 -0.3934 12 6 9.6138 3.1139 -0.5267 13 1 10.0144 3.8910 -1.1607 14 6 10.5207 2.2153 0.1937 15 7 11.8007 2.3162 0.0256 16 14 9.8300 0.9247 1.3542 17 1 9.6240 -0.3464 0.6146 18 1 10.7848 0.6997 2.4690 19 1 8.5321 1.3950 1.9014 20 6 7.3887 4.1031 -0.4122 21 7 7.9689 5.4554 -0.5718 22 8 7.1915 6.5167 -0.5120 23 8 9.2626 5.5971 -0.7737 24 6 6.0448 3.9487 -0.2889 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 5.0676 0.2828 1.2159 31 1 3.4937 -0.5461 1.2814 32 1 3.7229 0.9977 2.1373 33 1 3.4760 -0.5365 -1.2948 34 1 3.7410 1.0087 -2.1378 35 1 5.0635 0.2639 -1.2080 36 1 3.5658 3.3056 0.0922 37 1 5.8887 0.5565 0.0070 38 1 8.3032 0.8022 -0.2245 39 1 12.4008 1.7214 0.5020 40 1 5.3994 4.8144 -0.3077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166040039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:19 Heat of formation + Delta-G solvation = 14.515713 kcal Electronic energy + Delta-G solvation = -24072.484844 eV Core-core repulsion = 20471.387848 eV Total energy + Delta-G solvation = -3601.096996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.75257 -38.35544 -36.99953 -35.80617 -34.21301 -32.56246 -32.02244 -30.61302 -29.41038 -27.69557 -27.17474 -25.99905 -25.41649 -23.73789 -21.94806 -20.80974 -19.52545 -18.25921 -17.37252 -16.86990 -16.30238 -16.06381 -15.98658 -15.69070 -14.80781 -14.53467 -14.20738 -14.11527 -13.90166 -13.73359 -13.30262 -12.94006 -12.82505 -12.80991 -12.29951 -11.98842 -11.88307 -11.73442 -11.48084 -11.44615 -11.06894 -10.96325 -10.82123 -10.28306 -10.12966 -9.97811 -9.89087 -9.38099 -9.28146 -8.95988 -8.85421 -8.37280 -7.66720 -7.07979 -4.84502 0.93741 2.30456 2.62677 2.68588 2.84890 2.85848 3.10559 3.36398 3.43678 3.91872 4.14725 4.68970 4.71357 4.83228 5.04790 5.05429 5.06895 5.31231 5.36965 5.45716 5.52546 5.55450 5.80328 5.81671 5.93595 5.96416 6.00267 6.14660 6.31886 6.38447 6.39873 6.48713 6.71115 6.85099 6.91997 7.08863 7.21968 7.41899 7.72764 7.89506 8.05397 8.22447 8.32991 8.89583 9.20621 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.004902 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.428033 B = 5710.481139 C = 6974.887401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.065 3.935 4 C 0.188 3.812 5 C -0.170 4.170 6 C -0.172 4.172 7 N -0.741 5.741 8 C 0.118 3.882 9 C -0.123 4.123 10 C -0.153 4.153 11 C 0.044 3.956 12 C -0.302 4.302 13 H 0.143 0.857 14 C 0.059 3.941 15 N -0.710 5.710 16 Si 0.914 3.086 17 H -0.255 1.255 18 H -0.277 1.277 19 H -0.227 1.227 20 C -0.059 4.059 21 N 0.036 4.964 22 O -0.369 6.369 23 O -0.284 6.284 24 C -0.110 4.110 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.391 0.609 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.307 0.693 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.562 -12.020 2.417 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C 0.100 3.900 5 C -0.229 4.229 6 C -0.230 4.230 7 N -0.377 5.377 8 C 0.017 3.983 9 C -0.143 4.143 10 C -0.173 4.173 11 C 0.038 3.962 12 C -0.330 4.330 13 H 0.160 0.840 14 C -0.174 4.174 15 N -0.330 5.330 16 Si 0.738 3.262 17 H -0.181 1.181 18 H -0.203 1.203 19 H -0.150 1.150 20 C -0.163 4.163 21 N 0.448 4.552 22 O -0.507 6.507 23 O -0.440 6.440 24 C -0.135 4.135 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.225 0.775 37 H 0.152 0.848 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.372 -12.454 2.436 19.173 hybrid contribution -0.373 0.468 0.401 0.720 sum -14.745 -11.987 2.837 19.213 Atomic orbital electron populations 1.22744 0.81000 1.02734 0.99987 1.87844 1.19517 1.27201 1.95409 1.22558 0.93234 0.84942 1.00546 1.19845 0.90090 0.84154 0.95881 1.22494 1.02717 1.00433 0.97209 1.22497 1.03224 1.00338 0.96913 1.43566 1.03859 1.05422 1.84832 1.16821 0.83195 0.92063 1.06260 1.20986 0.93483 0.97628 1.02242 1.20752 0.94478 0.95546 1.06533 1.17170 0.93352 0.89580 0.96102 1.22306 0.89315 1.08250 1.13086 0.84002 1.28239 0.94545 0.97260 0.97330 1.68912 1.04993 1.29565 1.29512 0.86266 0.81571 0.79131 0.79261 1.18065 1.20299 1.15000 1.19164 0.92312 0.79269 1.25538 1.49575 1.01696 1.03189 1.00754 1.96047 1.57899 1.28316 1.68447 1.96038 0.92789 1.94912 1.60244 1.19422 0.93154 0.95682 1.05276 0.94081 0.89561 0.94119 0.92909 0.92787 0.90968 0.91462 0.92539 0.91453 0.92426 0.90455 0.77495 0.84790 0.86788 0.87969 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.95 9.21 -35.23 -0.32 -4.27 16 3 C 0.06 0.66 4.92 37.16 0.18 0.84 16 4 C 0.19 2.30 0.89 -131.82 -0.12 2.18 16 5 C -0.17 -2.07 8.27 37.16 0.31 -1.76 16 6 C -0.17 -2.14 8.07 37.16 0.30 -1.84 16 7 N -0.74 -10.60 5.18 -45.84 -0.24 -10.83 16 8 C 0.12 2.14 6.24 -83.80 -0.52 1.62 16 9 C -0.12 -2.20 6.88 -39.72 -0.27 -2.47 16 10 C -0.15 -3.09 6.75 -39.12 -0.26 -3.35 16 11 C 0.04 1.04 5.23 -106.75 -0.56 0.48 16 12 C -0.30 -7.56 8.62 -35.74 -0.31 -7.87 16 13 H 0.14 3.98 5.66 -52.49 -0.30 3.68 16 14 C 0.06 1.32 5.68 -15.17 -0.09 1.24 16 15 N -0.71 -15.86 13.89 55.99 0.78 -15.09 16 16 Si 0.91 16.69 24.51 -169.99 -4.17 12.53 16 17 H -0.26 -4.25 6.91 56.52 0.39 -3.86 16 18 H -0.28 -4.87 7.11 56.52 0.40 -4.46 16 19 H -0.23 -4.29 6.22 56.52 0.35 -3.94 16 20 C -0.06 -1.48 6.90 -79.48 -0.55 -2.03 16 21 N 0.04 1.03 4.98 34.19 0.17 1.20 16 22 O -0.37 -10.84 19.13 -31.56 -0.60 -11.45 16 23 O -0.28 -8.52 16.16 -31.57 -0.51 -9.03 16 24 C -0.11 -2.39 9.36 -39.73 -0.37 -2.76 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.95 4.86 -51.93 -0.25 0.69 16 31 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.77 7.54 -51.93 -0.39 0.38 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.03 4.57 -51.93 -0.24 0.80 16 36 H 0.39 5.04 8.47 -40.82 -0.35 4.69 16 37 H 0.13 2.02 3.12 -52.49 -0.16 1.86 16 38 H 0.11 2.10 4.35 -52.48 -0.23 1.87 16 39 H 0.31 5.88 8.27 -40.82 -0.34 5.54 16 40 H 0.12 2.55 7.54 -52.49 -0.40 2.16 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -30.14 321.06 -6.06 -36.20 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -4.86 Total: 10.28 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.15 Total: -14.38 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.71 Total: -24.72 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.44 Total: -24.75 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -4.17 Total: 12.53 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.14 -6.06 -36.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166040039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.719 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds