Wall clock time and date at job start Tue Mar 31 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00103 * 2 1 4 4 C 1.52998 * 109.47371 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46968 * 300.00071 * 4 3 2 6 6 C 1.53000 * 109.47036 * 59.99810 * 4 3 2 7 7 N 1.46499 * 109.47390 * 180.02562 * 4 3 2 8 8 C 1.37652 * 120.00122 * 186.26397 * 7 4 3 9 9 C 1.40188 * 119.81409 * 352.75903 * 8 7 4 10 10 C 1.35796 * 120.19326 * 179.97438 * 9 8 7 11 11 C 1.41746 * 119.80665 * 0.02562 * 10 9 8 12 12 C 1.39519 * 120.18918 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99886 * 145.31717 * 12 11 10 14 14 C 1.46590 * 119.99413 * 325.32054 * 12 11 10 15 15 N 1.29492 * 119.99618 * 177.04267 * 14 12 11 16 16 Si 1.86793 * 120.00427 * 357.03695 * 14 12 11 17 17 H 1.48503 * 109.46889 * 91.92999 * 16 14 12 18 18 H 1.48497 * 109.47322 * 211.93055 * 16 14 12 19 19 H 1.48506 * 109.47121 * 331.93089 * 16 14 12 20 20 C 1.41720 * 119.63222 * 359.97438 * 11 10 9 21 21 N 1.48014 * 120.10409 * 179.97438 * 20 11 10 22 22 O 1.31693 * 120.00287 * 183.90569 * 21 20 11 23 23 O 1.31706 * 119.99422 * 3.90958 * 21 20 11 24 24 C 1.35834 * 119.80046 * 359.70277 * 20 11 10 25 25 H 1.08994 * 109.47217 * 59.99736 * 1 2 3 26 26 H 1.09000 * 109.46939 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46920 * 299.99833 * 1 2 3 28 28 H 1.08999 * 109.47070 * 60.00228 * 3 2 1 29 29 H 1.09003 * 109.47538 * 300.00013 * 3 2 1 30 30 H 1.08997 * 109.47081 * 176.37319 * 5 4 3 31 31 H 1.09000 * 109.47104 * 56.37147 * 5 4 3 32 32 H 1.08998 * 109.47071 * 296.37204 * 5 4 3 33 33 H 1.08995 * 109.47278 * 304.87034 * 6 4 3 34 34 H 1.08998 * 109.46797 * 64.87850 * 6 4 3 35 35 H 1.09001 * 109.46635 * 184.87206 * 6 4 3 36 36 H 0.97000 * 119.99772 * 6.25248 * 7 4 3 37 37 H 1.08002 * 119.90103 * 359.97438 * 9 8 7 38 38 H 1.08007 * 120.09721 * 180.02562 * 10 9 8 39 39 H 0.96998 * 120.00018 * 180.02562 * 15 14 12 40 40 H 1.07996 * 119.90725 * 180.28924 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9874 0.4251 1.2483 6 6 3.9864 0.4256 -1.2502 7 7 4.1313 2.5230 0.0000 8 6 5.4938 2.6698 -0.1305 9 6 6.3218 1.5388 -0.1108 10 6 7.6668 1.6747 -0.2394 11 6 8.2330 2.9650 -0.3934 12 6 9.6138 3.1139 -0.5267 13 1 10.0144 3.8910 -1.1607 14 6 10.5207 2.2153 0.1937 15 7 11.8007 2.3162 0.0256 16 14 9.8300 0.9247 1.3542 17 1 9.6240 -0.3464 0.6146 18 1 10.7848 0.6997 2.4690 19 1 8.5321 1.3950 1.9014 20 6 7.3887 4.1031 -0.4122 21 7 7.9689 5.4554 -0.5718 22 8 7.1915 6.5167 -0.5120 23 8 9.2626 5.5971 -0.7737 24 6 6.0448 3.9487 -0.2889 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 5.0676 0.2828 1.2159 31 1 3.4937 -0.5461 1.2814 32 1 3.7229 0.9977 2.1373 33 1 3.4760 -0.5365 -1.2948 34 1 3.7410 1.0087 -2.1378 35 1 5.0635 0.2639 -1.2080 36 1 3.5658 3.3056 0.0922 37 1 5.8887 0.5565 0.0070 38 1 8.3032 0.8022 -0.2245 39 1 12.4008 1.7214 0.5020 40 1 5.3994 4.8144 -0.3077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166040039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:18 Heat of formation + Delta-G solvation = -7.630462 kcal Electronic energy + Delta-G solvation = -24073.445174 eV Core-core repulsion = 20471.387848 eV Total energy + Delta-G solvation = -3602.057326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16605 -39.56979 -38.30238 -37.31783 -35.99517 -34.29241 -33.54871 -32.25211 -31.03458 -28.47777 -28.12266 -27.44740 -26.61650 -25.35736 -23.64004 -22.35063 -20.76996 -20.10116 -18.85551 -18.21326 -17.74768 -17.21835 -17.19758 -16.75932 -16.19834 -15.91760 -15.88413 -15.50810 -15.21235 -14.94250 -14.74475 -14.40310 -14.21479 -14.00376 -13.63681 -13.19493 -12.97272 -12.89150 -12.69069 -12.62973 -12.44829 -12.13923 -12.04775 -11.81486 -11.46616 -11.27819 -11.17391 -11.02736 -10.91088 -10.70184 -10.56454 -10.07772 -9.49017 -8.68557 -6.78384 -1.04435 0.63939 0.90061 1.17709 1.36459 1.48344 1.53676 1.93742 2.18843 2.28141 2.95529 3.14055 3.80639 3.81898 3.92665 4.06631 4.12980 4.15053 4.39823 4.45281 4.54787 4.55915 4.62831 4.69266 4.79762 4.85849 4.89638 4.92615 5.03130 5.04227 5.07881 5.23167 5.33556 5.38267 5.44353 5.46292 5.63584 5.87886 6.00774 6.18744 6.33246 6.55482 6.86896 7.09420 7.42028 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.004902 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.428033 B = 5710.481139 C = 6974.887401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.068 3.932 4 C 0.177 3.823 5 C -0.169 4.169 6 C -0.172 4.172 7 N -0.722 5.722 8 C 0.197 3.803 9 C -0.122 4.122 10 C -0.122 4.122 11 C 0.002 3.998 12 C -0.249 4.249 13 H 0.098 0.902 14 C 0.013 3.987 15 N -0.711 5.711 16 Si 0.969 3.031 17 H -0.201 1.201 18 H -0.257 1.257 19 H -0.231 1.231 20 C -0.026 4.026 21 N 0.018 4.982 22 O -0.489 6.489 23 O -0.421 6.421 24 C -0.191 4.191 25 H 0.046 0.954 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.402 0.598 37 H 0.184 0.816 38 H 0.151 0.849 39 H 0.334 0.666 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.517 -19.973 4.254 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C -0.009 4.009 4 C 0.091 3.909 5 C -0.227 4.227 6 C -0.229 4.229 7 N -0.355 5.355 8 C 0.090 3.910 9 C -0.142 4.142 10 C -0.142 4.142 11 C -0.004 4.004 12 C -0.280 4.280 13 H 0.116 0.884 14 C -0.219 4.219 15 N -0.333 5.333 16 Si 0.784 3.216 17 H -0.124 1.124 18 H -0.182 1.182 19 H -0.154 1.154 20 C -0.141 4.141 21 N 0.380 4.620 22 O -0.596 6.596 23 O -0.541 6.541 24 C -0.218 4.218 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.237 0.763 37 H 0.200 0.800 38 H 0.168 0.832 39 H 0.148 0.852 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.236 -20.062 4.199 26.148 hybrid contribution 0.250 1.944 -0.082 1.962 sum -15.985 -18.118 4.118 24.510 Atomic orbital electron populations 1.22931 0.79395 1.03957 1.00710 1.87799 1.21189 1.26795 1.95562 1.22442 0.91580 0.85489 1.01396 1.20176 0.91771 0.82305 0.96644 1.22484 1.02452 1.01221 0.96531 1.22508 1.02953 1.01145 0.96339 1.43962 1.02591 1.07762 1.81212 1.17072 0.84927 0.90848 0.98177 1.21559 0.92581 0.99281 1.00730 1.21115 0.95947 0.94205 1.02909 1.17543 0.92703 0.91316 0.98831 1.22788 0.91384 1.05481 1.08357 0.88412 1.29348 0.94478 0.99284 0.98780 1.68851 1.06299 1.29326 1.28826 0.85538 0.81057 0.77469 0.77558 1.12394 1.18224 1.15442 1.19830 0.93895 0.78673 1.21692 1.49435 1.00798 1.03497 1.08232 1.95896 1.58093 1.30153 1.75489 1.95895 0.94732 1.95303 1.68132 1.19296 0.92001 0.97104 1.13398 0.93494 0.88170 0.93303 0.91909 0.92335 0.91258 0.89743 0.92440 0.89682 0.93010 0.90831 0.76280 0.79983 0.83219 0.85150 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.40 -6.16 9.21 -148.98 -1.37 -7.53 16 3 C 0.07 1.07 4.92 71.98 0.35 1.43 16 4 C 0.18 3.38 0.89 3.60 0.00 3.38 16 5 C -0.17 -3.00 8.27 71.98 0.60 -2.40 16 6 C -0.17 -3.27 8.07 71.98 0.58 -2.69 16 7 N -0.72 -17.87 5.18 -298.95 -1.55 -19.42 16 8 C 0.20 6.61 6.24 39.17 0.24 6.85 16 9 C -0.12 -3.66 6.88 22.18 0.15 -3.51 16 10 C -0.12 -4.31 6.75 22.57 0.15 -4.15 16 11 C 0.00 0.08 5.23 -21.24 -0.11 -0.03 16 12 C -0.25 -12.77 8.62 24.76 0.21 -12.55 16 13 H 0.10 5.99 5.66 -2.91 -0.02 5.98 16 14 C 0.01 0.54 5.68 87.22 0.50 1.04 16 15 N -0.71 -30.15 13.89 23.22 0.32 -29.83 16 16 Si 0.97 28.35 24.51 68.60 1.68 30.03 16 17 H -0.20 -4.45 6.91 99.48 0.69 -3.77 16 18 H -0.26 -7.00 7.11 99.48 0.71 -6.30 16 19 H -0.23 -7.07 6.22 99.48 0.62 -6.46 16 20 C -0.03 -1.42 6.90 36.68 0.25 -1.16 16 21 N 0.02 1.16 4.98 -45.75 -0.23 0.93 16 22 O -0.49 -34.03 19.13 3.53 0.07 -33.96 16 23 O -0.42 -29.66 16.16 3.50 0.06 -29.60 16 24 C -0.19 -8.64 9.36 22.18 0.21 -8.43 16 25 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.27 4.86 -2.39 -0.01 1.26 16 31 H 0.08 1.30 7.57 -2.39 -0.02 1.28 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.40 7.54 -2.39 -0.02 1.38 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.44 4.57 -2.39 -0.01 1.43 16 36 H 0.40 9.18 8.47 -92.71 -0.79 8.39 16 37 H 0.18 3.96 3.12 -2.91 -0.01 3.95 16 38 H 0.15 4.28 4.35 -2.91 -0.01 4.27 16 39 H 0.33 11.43 8.27 -92.71 -0.77 10.66 16 40 H 0.11 5.12 7.54 -2.91 -0.02 5.10 16 Total: -1.00 -81.14 321.06 3.58 -77.56 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.21 Total: 32.55 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.39 Total: -20.73 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -1.45 Total: -48.31 kcal Atomic # 8 Polarization: -69.85 SS G_CDS: -1.25 Total: -71.10 kcal Atomic # 14 Polarization: 28.35 SS G_CDS: 1.68 Total: 30.03 kcal Total: -81.14 3.58 -77.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166040039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.931 kcal (2) G-P(sol) polarization free energy of solvation -81.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds