Wall clock time and date at job start Tue Mar 31 2020 08:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47380 * 2 1 4 4 C 1.46491 * 120.00254 * 270.00411 * 3 2 1 5 5 C 1.50700 * 109.47135 * 269.99843 * 4 3 2 6 6 H 1.07995 * 119.99870 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99967 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00184 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99913 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47087 * 89.99625 * 9 7 5 11 11 H 1.48497 * 109.47197 * 210.00068 * 9 7 5 12 12 H 1.48503 * 109.47119 * 330.00269 * 9 7 5 13 13 C 1.38505 * 119.99525 * 89.99855 * 3 2 1 14 14 C 1.39011 * 119.49041 * 5.00640 * 13 3 2 15 15 C 1.38644 * 119.19312 * 179.97438 * 14 13 3 16 16 O 1.35523 * 120.88854 * 180.02562 * 15 14 13 17 17 C 1.42904 * 116.99889 * 359.97438 * 16 15 14 18 18 C 1.41078 * 118.22255 * 359.97438 * 15 14 13 19 19 C 1.47126 * 120.53641 * 180.02562 * 18 15 14 20 20 O 1.21543 * 120.00459 * 359.72521 * 19 18 15 21 21 O 1.34790 * 119.99964 * 179.97438 * 19 18 15 22 22 C 1.45198 * 117.00327 * 179.97438 * 21 19 18 23 23 C 1.39585 * 118.92179 * 0.27343 * 18 15 14 24 24 N 1.31597 * 120.68103 * 359.40572 * 23 18 15 25 25 H 1.08993 * 109.47411 * 59.99529 * 1 2 3 26 26 H 1.09002 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46932 * 299.99545 * 1 2 3 28 28 H 1.08999 * 109.46843 * 239.99910 * 2 1 3 29 29 H 1.09001 * 109.47156 * 120.00709 * 2 1 3 30 30 H 1.09001 * 109.47263 * 29.99516 * 4 3 2 31 31 H 1.09001 * 109.47534 * 149.99988 * 4 3 2 32 32 H 0.97000 * 120.00075 * 180.02562 * 8 7 5 33 33 H 1.07996 * 120.40648 * 359.97055 * 14 13 3 34 34 H 1.09000 * 109.47044 * 60.00061 * 17 16 15 35 35 H 1.08994 * 109.46732 * 179.97438 * 17 16 15 36 36 H 1.08998 * 109.46903 * 299.99516 * 17 16 15 37 37 H 1.08996 * 109.47472 * 180.02562 * 22 21 19 38 38 H 1.09003 * 109.47655 * 300.01022 * 22 21 19 39 39 H 1.09011 * 109.46630 * 60.00331 * 22 21 19 40 40 H 1.07995 * 119.66275 * 179.70794 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0958 7 6 4.1493 2.3905 -2.8774 8 7 3.3493 3.1266 -3.6174 9 14 5.9137 2.0976 -3.4164 10 1 5.9775 0.8769 -4.2596 11 1 6.3927 3.2653 -4.1987 12 1 6.7736 1.9175 -2.2191 13 6 2.2492 2.0340 1.1995 14 6 2.1147 1.3371 2.3948 15 6 2.3478 1.9965 3.5920 16 8 2.2271 1.3503 4.7771 17 6 1.8516 -0.0277 4.7294 18 6 2.7149 3.3578 3.5433 19 6 2.9747 4.1067 4.7828 20 8 2.8688 3.5543 5.8602 21 8 3.3253 5.4069 4.7237 22 6 3.5658 6.0829 5.9860 23 6 2.8225 3.9840 2.3005 24 7 2.5974 3.3150 1.1898 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0283 31 1 2.0956 3.1410 -1.1383 32 1 3.6754 3.5172 -4.4433 33 1 1.8321 0.2948 2.3910 34 1 2.5969 -0.5880 4.1649 35 1 1.7916 -0.4231 5.7433 36 1 0.8805 -0.1230 4.2437 37 1 3.8388 7.1208 5.7961 38 1 2.6613 6.0507 6.5936 39 1 4.3775 5.5844 6.5162 40 1 3.0981 5.0269 2.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:45 Heat of formation + Delta-G solvation = -74.433513 kcal Electronic energy + Delta-G solvation = -23926.140235 eV Core-core repulsion = 20321.186111 eV Total energy + Delta-G solvation = -3604.954124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64594 -39.50661 -38.32914 -36.33943 -35.94785 -32.89460 -31.63735 -30.70485 -29.97100 -27.92507 -27.23819 -26.52884 -24.05814 -23.44818 -22.10240 -21.38661 -20.25290 -18.12653 -17.46018 -16.85482 -16.41166 -16.19418 -16.14673 -15.59405 -15.48099 -14.91773 -14.65255 -14.21444 -13.96752 -13.57612 -13.48286 -13.12656 -12.83676 -12.53999 -12.41748 -12.14245 -11.97299 -11.81406 -11.49136 -11.44863 -11.21029 -10.98312 -10.74494 -10.62607 -10.58005 -10.24876 -10.13353 -9.94726 -9.20006 -8.83637 -8.67044 -8.47204 -7.07785 -6.08015 -4.14575 1.24748 1.78048 2.99262 3.03240 3.24899 3.26607 3.33996 3.37667 3.59066 4.32639 4.40957 4.86716 5.00703 5.15122 5.17075 5.19108 5.22517 5.24898 5.25576 5.27359 5.41054 5.46511 5.51118 5.53221 5.64042 5.75663 5.91492 5.96542 6.12018 6.18204 6.41122 6.63484 6.68170 6.89998 7.33441 7.44356 7.69483 7.85498 8.08646 8.15476 8.16327 8.69751 8.90476 9.50185 10.98141 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.004817 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.384272 B = 5811.477846 C = 7051.489732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.565 5.565 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.475 3.525 14 C -0.365 4.365 15 C 0.262 3.738 16 O -0.285 6.285 17 C 0.023 3.977 18 C -0.305 4.305 19 C 0.524 3.476 20 O -0.514 6.514 21 O -0.362 6.362 22 C 0.040 3.960 23 C 0.250 3.750 24 N -0.544 5.544 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.264 0.736 33 H 0.139 0.861 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -2.478 13.998 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.268 5.268 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.237 3.763 14 C -0.392 4.392 15 C 0.207 3.793 16 O -0.194 6.194 17 C -0.073 4.073 18 C -0.314 4.314 19 C 0.370 3.630 20 O -0.403 6.403 21 O -0.279 6.279 22 C -0.054 4.054 23 C 0.083 3.917 24 N -0.263 5.263 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.169 -2.265 13.297 14.118 hybrid contribution 0.918 -0.779 0.419 1.275 sum -3.251 -3.045 13.716 14.421 Atomic orbital electron populations 1.22208 0.96363 1.01587 1.02600 1.21488 0.93704 0.82919 1.02897 1.47391 1.62164 1.12239 1.04968 1.19465 0.96273 0.94185 0.77291 1.21391 0.96702 1.32097 1.06378 0.92590 1.24888 0.97742 0.94839 0.96318 1.69921 1.35662 1.33248 1.14295 0.86523 0.84734 0.77700 0.78614 1.20719 1.21028 1.19940 1.18293 0.84368 0.87840 0.85782 1.21237 1.24450 1.02375 0.91147 1.18816 0.86378 0.89565 0.84496 1.86258 1.81912 1.24497 1.26705 1.23134 1.00029 0.80215 1.03879 1.18982 1.26849 0.92506 0.93061 1.20642 0.73324 0.79861 0.89143 1.90824 1.49482 1.69336 1.30642 1.86557 1.80466 1.25137 1.35728 1.23146 1.01433 0.96620 0.84165 1.22799 0.85313 0.98903 0.84657 1.67499 1.21439 1.07319 1.29997 0.91900 0.91969 0.92818 0.89454 0.91503 0.95080 0.92574 0.92665 0.84334 0.92426 0.88226 0.92454 0.88420 0.92293 0.92273 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.78 5.95 -4.04 -0.02 1.76 16 3 N -0.57 -11.40 2.56 -175.32 -0.45 -11.85 16 4 C 0.25 6.05 5.21 -5.20 -0.03 6.02 16 5 C -0.53 -14.20 9.39 -34.44 -0.32 -14.53 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 9 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.48 9.42 7.36 -155.25 -1.14 8.27 16 14 C -0.37 -6.15 8.25 -39.14 -0.32 -6.47 16 15 C 0.26 4.50 6.74 -38.36 -0.26 4.25 16 16 O -0.28 -4.57 8.71 -39.58 -0.34 -4.91 16 17 C 0.02 0.25 9.84 101.05 0.99 1.24 16 18 C -0.31 -5.37 5.90 -104.71 -0.62 -5.99 16 19 C 0.52 8.96 7.89 34.34 0.27 9.23 16 20 O -0.51 -9.72 15.07 -26.46 -0.40 -10.12 16 21 O -0.36 -5.25 9.83 -40.74 -0.40 -5.66 16 22 C 0.04 0.43 10.57 101.05 1.07 1.50 16 23 C 0.25 4.44 10.78 -17.15 -0.18 4.26 16 24 N -0.54 -11.34 9.02 -12.21 -0.11 -11.45 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 29 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.06 1.52 7.28 -51.93 -0.38 1.14 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.14 1.95 4.36 -52.49 -0.23 1.73 16 34 H 0.06 0.58 7.70 -51.93 -0.40 0.18 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.17 2.55 7.61 -52.49 -0.40 2.15 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -32.62 342.75 -6.56 -39.18 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.46 Total: -1.20 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -0.29 Total: 9.35 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.18 Total: -48.04 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.14 Total: -20.68 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.62 -6.56 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.253 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds