Wall clock time and date at job start Tue Mar 31 2020 08:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47380 * 2 1 4 4 C 1.46491 * 120.00254 * 270.00411 * 3 2 1 5 5 C 1.50700 * 109.47135 * 269.99843 * 4 3 2 6 6 H 1.07995 * 119.99870 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99967 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00184 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99913 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47087 * 89.99625 * 9 7 5 11 11 H 1.48497 * 109.47197 * 210.00068 * 9 7 5 12 12 H 1.48503 * 109.47119 * 330.00269 * 9 7 5 13 13 C 1.38505 * 119.99525 * 89.99855 * 3 2 1 14 14 C 1.39011 * 119.49041 * 5.00640 * 13 3 2 15 15 C 1.38644 * 119.19312 * 179.97438 * 14 13 3 16 16 O 1.35523 * 120.88854 * 180.02562 * 15 14 13 17 17 C 1.42904 * 116.99889 * 359.97438 * 16 15 14 18 18 C 1.41078 * 118.22255 * 359.97438 * 15 14 13 19 19 C 1.47126 * 120.53641 * 180.02562 * 18 15 14 20 20 O 1.21543 * 120.00459 * 359.72521 * 19 18 15 21 21 O 1.34790 * 119.99964 * 179.97438 * 19 18 15 22 22 C 1.45198 * 117.00327 * 179.97438 * 21 19 18 23 23 C 1.39585 * 118.92179 * 0.27343 * 18 15 14 24 24 N 1.31597 * 120.68103 * 359.40572 * 23 18 15 25 25 H 1.08993 * 109.47411 * 59.99529 * 1 2 3 26 26 H 1.09002 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46932 * 299.99545 * 1 2 3 28 28 H 1.08999 * 109.46843 * 239.99910 * 2 1 3 29 29 H 1.09001 * 109.47156 * 120.00709 * 2 1 3 30 30 H 1.09001 * 109.47263 * 29.99516 * 4 3 2 31 31 H 1.09001 * 109.47534 * 149.99988 * 4 3 2 32 32 H 0.97000 * 120.00075 * 180.02562 * 8 7 5 33 33 H 1.07996 * 120.40648 * 359.97055 * 14 13 3 34 34 H 1.09000 * 109.47044 * 60.00061 * 17 16 15 35 35 H 1.08994 * 109.46732 * 179.97438 * 17 16 15 36 36 H 1.08998 * 109.46903 * 299.99516 * 17 16 15 37 37 H 1.08996 * 109.47472 * 180.02562 * 22 21 19 38 38 H 1.09003 * 109.47655 * 300.01022 * 22 21 19 39 39 H 1.09011 * 109.46630 * 60.00331 * 22 21 19 40 40 H 1.07995 * 119.66275 * 179.70794 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0958 7 6 4.1493 2.3905 -2.8774 8 7 3.3493 3.1266 -3.6174 9 14 5.9137 2.0976 -3.4164 10 1 5.9775 0.8769 -4.2596 11 1 6.3927 3.2653 -4.1987 12 1 6.7736 1.9175 -2.2191 13 6 2.2492 2.0340 1.1995 14 6 2.1147 1.3371 2.3948 15 6 2.3478 1.9965 3.5920 16 8 2.2271 1.3503 4.7771 17 6 1.8516 -0.0277 4.7294 18 6 2.7149 3.3578 3.5433 19 6 2.9747 4.1067 4.7828 20 8 2.8688 3.5543 5.8602 21 8 3.3253 5.4069 4.7237 22 6 3.5658 6.0829 5.9860 23 6 2.8225 3.9840 2.3005 24 7 2.5974 3.3150 1.1898 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0283 31 1 2.0956 3.1410 -1.1383 32 1 3.6754 3.5172 -4.4433 33 1 1.8321 0.2948 2.3910 34 1 2.5969 -0.5880 4.1649 35 1 1.7916 -0.4231 5.7433 36 1 0.8805 -0.1230 4.2437 37 1 3.8388 7.1208 5.7961 38 1 2.6613 6.0507 6.5936 39 1 4.3775 5.5844 6.5162 40 1 3.0981 5.0269 2.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:44 Heat of formation + Delta-G solvation = -93.364544 kcal Electronic energy + Delta-G solvation = -23926.961146 eV Core-core repulsion = 20321.186111 eV Total energy + Delta-G solvation = -3605.775035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.96650 -40.78068 -39.61145 -37.75766 -37.21744 -34.89463 -32.95986 -32.05263 -31.48032 -29.04673 -28.51248 -27.85779 -25.35161 -25.20181 -23.41455 -22.74411 -21.62116 -19.44211 -18.78398 -18.56314 -18.04739 -17.46616 -17.33871 -16.87464 -16.68651 -16.57153 -15.94531 -15.76385 -15.30211 -14.83416 -14.68146 -14.41796 -14.16912 -14.01236 -13.69355 -13.56421 -13.28415 -13.01916 -12.92706 -12.69340 -12.57906 -12.50808 -12.37994 -12.17040 -11.87854 -11.76077 -11.68167 -11.51539 -10.82335 -10.59645 -10.26508 -9.96992 -8.64561 -8.10855 -6.30345 -0.14184 0.43574 1.39044 1.41416 1.51054 1.67696 1.84405 2.07845 2.20910 2.42851 2.94647 3.13230 3.53645 3.85293 3.91847 3.99649 4.15564 4.30130 4.35316 4.37113 4.39244 4.40486 4.41365 4.55190 4.60130 4.73350 4.74368 4.82914 4.91601 4.97700 5.10159 5.25929 5.33096 5.41493 5.44313 5.71927 6.06564 6.16290 6.21803 6.49048 6.80227 6.87602 7.29062 7.40093 8.89245 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.004817 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.384272 B = 5811.477846 C = 7051.489732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 N -0.578 5.578 4 C 0.267 3.733 5 C -0.535 4.535 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.925 5.925 9 Si 0.960 3.040 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.276 1.276 13 C 0.455 3.545 14 C -0.351 4.351 15 C 0.260 3.740 16 O -0.301 6.301 17 C 0.010 3.990 18 C -0.313 4.313 19 C 0.527 3.473 20 O -0.535 6.535 21 O -0.364 6.364 22 C 0.032 3.968 23 C 0.249 3.751 24 N -0.587 5.587 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.016 0.984 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.168 0.832 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 -3.592 15.445 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.014 4.014 3 N -0.282 5.282 4 C 0.146 3.854 5 C -0.574 4.574 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.564 5.564 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.201 1.201 13 C 0.219 3.781 14 C -0.377 4.377 15 C 0.205 3.795 16 O -0.210 6.210 17 C -0.084 4.084 18 C -0.321 4.321 19 C 0.374 3.626 20 O -0.426 6.426 21 O -0.280 6.280 22 C -0.061 4.061 23 C 0.084 3.916 24 N -0.307 5.307 25 H 0.061 0.939 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.185 0.815 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.091 0.909 37 H 0.151 0.849 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.809 -3.383 14.787 15.640 hybrid contribution 0.783 -0.398 0.134 0.888 sum -3.026 -3.781 14.921 15.687 Atomic orbital electron populations 1.22130 0.94468 1.03500 1.01630 1.21750 0.95221 0.80700 1.03726 1.47269 1.63603 1.13707 1.03632 1.18845 0.94779 0.92664 0.79093 1.21629 0.97745 1.31675 1.06326 0.93412 1.25680 1.01613 0.94612 0.96462 1.70030 1.37460 1.34201 1.14749 0.85537 0.79886 0.77978 0.78098 1.19447 1.20676 1.20065 1.18570 0.85105 0.87972 0.86469 1.21329 1.23284 1.03359 0.89712 1.18925 0.85852 0.89640 0.85118 1.86253 1.81708 1.27008 1.26041 1.23528 1.01082 0.77730 1.06027 1.19213 1.26391 0.93247 0.93280 1.20557 0.72914 0.80585 0.88509 1.90803 1.50565 1.70024 1.31193 1.86542 1.79801 1.23876 1.37828 1.23518 1.01727 0.97996 0.82845 1.23028 0.84844 0.99545 0.84191 1.67449 1.22991 1.08564 1.31672 0.93936 0.88506 0.92687 0.90368 0.88833 0.96612 0.95931 0.92512 0.81507 0.91340 0.85820 0.90865 0.84924 0.91972 0.92151 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 2 C 0.11 3.27 5.95 86.38 0.51 3.78 16 3 N -0.58 -23.55 2.56 -708.59 -1.81 -25.36 16 4 C 0.27 13.60 5.21 85.63 0.45 14.05 16 5 C -0.53 -29.45 9.39 25.60 0.24 -29.20 16 6 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.02 0.87 5.46 84.66 0.46 1.33 16 8 N -0.92 -53.89 13.29 21.45 0.28 -53.61 16 9 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 10 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 C 0.46 18.07 7.36 133.10 0.98 19.05 16 14 C -0.35 -11.28 8.25 22.55 0.19 -11.09 16 15 C 0.26 8.61 6.74 23.06 0.16 8.76 16 16 O -0.30 -9.06 8.71 -67.88 -0.59 -9.65 16 17 C 0.01 0.19 9.84 113.37 1.12 1.30 16 18 C -0.31 -10.85 5.90 -19.92 -0.12 -10.97 16 19 C 0.53 17.59 7.89 70.16 0.55 18.15 16 20 O -0.53 -19.71 15.07 26.54 0.40 -19.31 16 21 O -0.36 -10.12 9.83 -57.02 -0.56 -10.68 16 22 C 0.03 0.62 10.57 113.37 1.20 1.82 16 23 C 0.25 8.91 10.78 85.05 0.92 9.83 16 24 N -0.59 -25.01 9.02 -192.53 -1.74 -26.74 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 29 H 0.09 2.28 5.95 -2.39 -0.01 2.27 16 30 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 31 H 0.02 1.29 7.28 -2.39 -0.02 1.27 16 32 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.17 4.21 4.36 -2.91 -0.01 4.19 16 34 H 0.07 1.14 7.70 -2.39 -0.02 1.12 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.15 7.71 -2.39 -0.02 1.13 16 37 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.19 5.66 7.61 -2.91 -0.02 5.64 16 Total: -1.00 -71.87 342.75 6.45 -65.42 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.05 Total: 10.50 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 7.39 Total: 23.59 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.26 Total: -105.71 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.75 Total: -39.65 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -71.87 6.45 -65.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.941 kcal (2) G-P(sol) polarization free energy of solvation -71.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds