Wall clock time and date at job start Tue Mar 31 2020 07:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00101 * 2 1 4 4 C 1.38756 * 120.05318 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.93931 * 179.74325 * 4 3 2 6 6 C 1.38289 * 120.06083 * 0.25153 * 5 4 3 7 7 C 1.50698 * 119.94464 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46753 * 257.23089 * 7 6 5 9 9 H 1.08998 * 109.47101 * 305.00111 * 8 7 6 10 10 C 1.53003 * 109.46748 * 185.00143 * 8 7 6 11 11 N 1.46900 * 109.47159 * 65.00236 * 8 7 6 12 12 C 1.46890 * 111.00185 * 204.99738 * 11 8 7 13 13 C 1.50697 * 109.47435 * 179.97438 * 12 11 8 14 14 H 1.07999 * 119.99979 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00445 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99594 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00129 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46952 * 60.00283 * 17 15 13 19 19 H 1.48500 * 109.47028 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47377 * 300.00006 * 17 15 13 21 21 C 1.38248 * 120.10796 * 359.97438 * 6 5 4 22 22 N 1.48004 * 119.96885 * 180.02562 * 21 6 5 23 23 O 1.21799 * 120.00020 * 185.62917 * 22 21 6 24 24 O 1.21800 * 120.00095 * 5.62585 * 22 21 6 25 25 C 1.38166 * 120.05504 * 0.02646 * 21 6 5 26 26 H 1.09001 * 109.46947 * 59.99477 * 1 2 3 27 27 H 1.08999 * 109.47286 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46941 * 299.99685 * 1 2 3 29 29 H 1.07993 * 120.02992 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.97124 * 180.23266 * 5 4 3 31 31 H 1.08994 * 109.47474 * 17.23435 * 7 6 5 32 32 H 1.09001 * 109.47175 * 137.23198 * 7 6 5 33 33 H 1.09001 * 109.47065 * 180.02562 * 10 8 7 34 34 H 1.08998 * 109.47294 * 299.99850 * 10 8 7 35 35 H 1.08994 * 109.47183 * 60.00492 * 10 8 7 36 36 H 1.00903 * 110.99979 * 328.95509 * 11 8 7 37 37 H 1.09002 * 109.47585 * 300.00512 * 12 11 8 38 38 H 1.09009 * 109.46976 * 59.99849 * 12 11 8 39 39 H 0.96998 * 119.99726 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.02122 * 179.97438 * 25 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0059 6 6 3.3019 3.6758 0.0055 7 6 3.9860 5.0185 0.0119 8 6 4.5008 5.3353 -1.3937 9 1 5.1410 4.5229 -1.7378 10 6 5.3027 6.6379 -1.3615 11 7 3.3624 5.4835 -2.3102 12 6 3.7609 5.1986 -3.6950 13 6 2.5698 5.3600 -4.6039 14 1 1.6125 5.6460 -4.1938 15 6 2.7020 5.1424 -5.9590 16 7 3.8676 4.7936 -6.4583 17 14 1.2255 5.3431 -7.0856 18 1 0.7185 6.7358 -6.9937 19 1 1.6284 5.0550 -8.4856 20 1 0.1563 4.3987 -6.6734 21 6 4.0560 2.5171 0.0002 22 7 5.5339 2.5967 0.0004 23 8 6.1985 1.5818 -0.1077 24 8 6.0855 3.6773 0.1085 25 6 3.4311 1.2848 -0.0052 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2128 2.3204 0.0014 30 1 1.3340 4.5113 0.0101 31 1 3.2767 5.7863 0.3207 32 1 4.8236 4.9962 0.7092 33 1 5.6691 6.8639 -2.3629 34 1 4.6626 7.4503 -1.0174 35 1 6.1474 6.5279 -0.6815 36 1 2.5919 4.8966 -2.0276 37 1 4.5457 5.8921 -3.9974 38 1 4.1335 4.1765 -3.7629 39 1 3.9607 4.6409 -7.4117 40 1 4.0207 0.3800 -0.0097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170294480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:57 Heat of formation + Delta-G solvation = -14.882991 kcal Electronic energy + Delta-G solvation = -24177.802813 eV Core-core repulsion = 20575.430993 eV Total energy + Delta-G solvation = -3602.371820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19342 -40.48960 -38.41331 -36.69573 -36.01369 -33.10876 -32.07680 -31.62527 -29.91387 -28.21891 -26.52795 -26.09838 -25.53962 -22.89874 -22.13710 -21.61877 -19.99491 -19.30761 -18.55424 -17.41534 -17.22832 -16.64245 -16.45303 -16.12095 -15.78531 -14.96123 -14.82358 -14.31760 -14.19598 -13.91962 -13.13244 -13.01597 -12.87938 -12.30588 -12.21086 -12.13104 -11.69678 -11.56920 -11.47944 -11.32665 -11.24296 -11.07621 -10.89590 -10.79905 -10.65983 -10.46118 -10.19483 -9.85744 -9.73069 -9.19136 -8.55332 -8.49450 -7.32073 -6.04032 -4.06786 -0.13278 0.88306 1.37948 1.45794 2.86374 3.15098 3.29609 3.34498 3.36637 4.24944 4.39847 4.43253 4.45114 4.59975 4.75955 4.80121 4.85748 5.12865 5.16206 5.30943 5.31210 5.39208 5.47037 5.61503 5.76058 5.84761 5.96075 5.96659 6.15975 6.21033 6.45739 6.56340 6.65898 6.83591 6.86861 7.28096 7.41095 7.76178 7.81363 8.12674 8.37826 8.59381 9.01909 9.57803 11.07015 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.005563 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.956136 B = 5032.255561 C = 6433.671782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.123 3.877 4 C -0.150 4.150 5 C -0.075 4.075 6 C -0.043 4.043 7 C -0.099 4.099 8 C 0.094 3.906 9 H 0.033 0.967 10 C -0.130 4.130 11 N -0.686 5.686 12 C 0.196 3.804 13 C -0.516 4.516 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.006 4.006 22 N 0.033 4.967 23 O -0.171 6.171 24 O -0.140 6.140 25 C -0.091 4.091 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.322 0.678 37 H 0.031 0.969 38 H -0.020 1.020 39 H 0.262 0.738 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 -6.423 17.064 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.094 4.094 6 C -0.044 4.044 7 C -0.136 4.136 8 C -0.017 4.017 9 H 0.051 0.949 10 C -0.188 4.188 11 N -0.318 5.318 12 C 0.069 3.931 13 C -0.554 4.554 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.089 4.089 22 N 0.552 4.448 23 O -0.383 6.383 24 O -0.358 6.358 25 C -0.111 4.111 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.077 0.923 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.049 0.951 38 H -0.002 1.002 39 H 0.072 0.928 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.621 -6.056 16.809 19.054 hybrid contribution -0.577 -0.909 -0.882 1.392 sum -7.198 -6.965 15.927 18.815 Atomic orbital electron populations 1.23183 0.77484 1.04608 1.01810 1.86091 1.21994 1.25635 1.88588 1.18503 0.90959 0.85078 0.97786 1.21692 1.01298 0.91956 1.01984 1.21026 0.92403 0.98454 0.97471 1.19946 0.93797 0.94903 0.95789 1.21335 1.01224 0.90773 1.00276 1.21376 0.93215 0.97308 0.89776 0.94861 1.21678 0.98665 0.96640 1.01850 1.60843 1.06984 1.59735 1.04232 1.19558 0.96804 0.94091 0.82603 1.21119 0.95992 1.46480 0.91825 0.92162 1.24999 0.96030 0.95307 0.98209 1.69959 1.23257 1.47146 1.13116 0.86563 0.82613 0.78639 0.79572 1.20091 1.21267 1.20417 1.20517 0.79660 0.95477 1.13276 1.43416 1.03238 1.00426 0.97771 1.94530 1.64171 1.25959 1.53636 1.94491 1.73480 1.15970 1.51887 1.19962 0.92603 0.97357 1.01139 0.91941 0.87689 0.92319 0.83567 0.82814 0.89669 0.87585 0.92398 0.92575 0.92812 0.86077 0.95124 1.00195 0.92804 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.35 10.50 -19.44 -0.20 -3.56 16 3 C 0.12 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.15 -1.58 9.04 -39.43 -0.36 -1.94 16 5 C -0.07 -0.87 8.49 -39.61 -0.34 -1.21 16 6 C -0.04 -0.60 4.52 -104.60 -0.47 -1.08 16 7 C -0.10 -1.42 4.23 -27.88 -0.12 -1.54 16 8 C 0.09 1.73 2.03 -67.71 -0.14 1.59 16 9 H 0.03 0.71 6.30 -51.93 -0.33 0.38 16 10 C -0.13 -2.23 9.42 37.16 0.35 -1.88 16 11 N -0.69 -14.76 6.30 -107.99 -0.68 -15.44 16 12 C 0.20 5.29 5.24 -4.98 -0.03 5.26 16 13 C -0.52 -14.74 9.32 -34.44 -0.32 -15.06 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 17 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.01 -0.09 6.73 -79.98 -0.54 -0.63 16 22 N 0.03 0.56 4.33 33.95 0.15 0.71 16 23 O -0.17 -2.99 18.46 -29.46 -0.54 -3.54 16 24 O -0.14 -2.41 13.67 -29.46 -0.40 -2.81 16 25 C -0.09 -1.25 9.50 -39.43 -0.37 -1.62 16 26 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.15 1.07 6.30 -52.49 -0.33 0.74 16 30 H 0.15 1.47 8.01 -52.49 -0.42 1.05 16 31 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 32 H 0.11 1.47 5.91 -51.93 -0.31 1.16 16 33 H 0.06 1.10 7.45 -51.93 -0.39 0.72 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.32 6.51 6.46 -39.29 -0.25 6.25 16 37 H 0.03 0.89 7.44 -51.93 -0.39 0.51 16 38 H -0.02 -0.58 8.06 -51.92 -0.42 -1.00 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.16 2.02 7.62 -52.49 -0.40 1.62 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -33.19 335.25 -7.87 -41.06 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.25 Total: 2.56 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.70 Total: -14.21 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.20 Total: -41.28 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.15 Total: -9.91 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.19 -7.87 -41.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170294480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.178 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds