Wall clock time and date at job start Tue Mar 31 2020 07:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00101 * 2 1 4 4 C 1.38756 * 120.05318 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.93931 * 179.74325 * 4 3 2 6 6 C 1.38289 * 120.06083 * 0.25153 * 5 4 3 7 7 C 1.50698 * 119.94464 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46753 * 257.23089 * 7 6 5 9 9 H 1.08998 * 109.47101 * 305.00111 * 8 7 6 10 10 C 1.53003 * 109.46748 * 185.00143 * 8 7 6 11 11 N 1.46900 * 109.47159 * 65.00236 * 8 7 6 12 12 C 1.46890 * 111.00185 * 204.99738 * 11 8 7 13 13 C 1.50697 * 109.47435 * 179.97438 * 12 11 8 14 14 H 1.07999 * 119.99979 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00445 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99594 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00129 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46952 * 60.00283 * 17 15 13 19 19 H 1.48500 * 109.47028 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47377 * 300.00006 * 17 15 13 21 21 C 1.38248 * 120.10796 * 359.97438 * 6 5 4 22 22 N 1.48004 * 119.96885 * 180.02562 * 21 6 5 23 23 O 1.21799 * 120.00020 * 185.62917 * 22 21 6 24 24 O 1.21800 * 120.00095 * 5.62585 * 22 21 6 25 25 C 1.38166 * 120.05504 * 0.02646 * 21 6 5 26 26 H 1.09001 * 109.46947 * 59.99477 * 1 2 3 27 27 H 1.08999 * 109.47286 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46941 * 299.99685 * 1 2 3 29 29 H 1.07993 * 120.02992 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.97124 * 180.23266 * 5 4 3 31 31 H 1.08994 * 109.47474 * 17.23435 * 7 6 5 32 32 H 1.09001 * 109.47175 * 137.23198 * 7 6 5 33 33 H 1.09001 * 109.47065 * 180.02562 * 10 8 7 34 34 H 1.08998 * 109.47294 * 299.99850 * 10 8 7 35 35 H 1.08994 * 109.47183 * 60.00492 * 10 8 7 36 36 H 1.00903 * 110.99979 * 328.95509 * 11 8 7 37 37 H 1.09002 * 109.47585 * 300.00512 * 12 11 8 38 38 H 1.09009 * 109.46976 * 59.99849 * 12 11 8 39 39 H 0.96998 * 119.99726 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.02122 * 179.97438 * 25 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0059 6 6 3.3019 3.6758 0.0055 7 6 3.9860 5.0185 0.0119 8 6 4.5008 5.3353 -1.3937 9 1 5.1410 4.5229 -1.7378 10 6 5.3027 6.6379 -1.3615 11 7 3.3624 5.4835 -2.3102 12 6 3.7609 5.1986 -3.6950 13 6 2.5698 5.3600 -4.6039 14 1 1.6125 5.6460 -4.1938 15 6 2.7020 5.1424 -5.9590 16 7 3.8676 4.7936 -6.4583 17 14 1.2255 5.3431 -7.0856 18 1 0.7185 6.7358 -6.9937 19 1 1.6284 5.0550 -8.4856 20 1 0.1563 4.3987 -6.6734 21 6 4.0560 2.5171 0.0002 22 7 5.5339 2.5967 0.0004 23 8 6.1985 1.5818 -0.1077 24 8 6.0855 3.6773 0.1085 25 6 3.4311 1.2848 -0.0052 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2128 2.3204 0.0014 30 1 1.3340 4.5113 0.0101 31 1 3.2767 5.7863 0.3207 32 1 4.8236 4.9962 0.7092 33 1 5.6691 6.8639 -2.3629 34 1 4.6626 7.4503 -1.0174 35 1 6.1474 6.5279 -0.6815 36 1 2.5919 4.8966 -2.0276 37 1 4.5457 5.8921 -3.9974 38 1 4.1335 4.1765 -3.7629 39 1 3.9607 4.6409 -7.4117 40 1 4.0207 0.3800 -0.0097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170294480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:56 Heat of formation + Delta-G solvation = -36.728222 kcal Electronic energy + Delta-G solvation = -24178.750093 eV Core-core repulsion = 20575.430993 eV Total energy + Delta-G solvation = -3603.319100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.44391 -41.42713 -39.47611 -37.97457 -37.49979 -35.09609 -33.08687 -33.07180 -31.41002 -29.09762 -28.10862 -27.49090 -26.72101 -24.22436 -23.66543 -22.97926 -21.49246 -20.34676 -19.83373 -18.78948 -18.49520 -18.14493 -17.56853 -16.95079 -16.85725 -16.71836 -16.51327 -15.70958 -15.22218 -15.04007 -14.55752 -14.25130 -14.07526 -13.67716 -13.64032 -13.47013 -13.31577 -13.00011 -12.73324 -12.59174 -12.49814 -12.48457 -12.39248 -12.21832 -12.15591 -12.00245 -11.67008 -11.59713 -11.28366 -10.69539 -10.68032 -9.52848 -9.19324 -8.24532 -6.37547 -1.30101 -0.08943 0.21346 0.31279 1.38600 1.43319 1.51369 2.08618 2.17533 2.37606 3.08505 3.29407 3.39889 3.50915 3.61028 3.73542 3.84867 4.04318 4.23815 4.34444 4.36326 4.38269 4.39730 4.62816 4.72373 4.74664 4.86587 4.89796 4.95115 5.00310 5.03359 5.06629 5.21145 5.22473 5.38916 5.45475 5.60005 5.99301 6.09234 6.40064 6.48077 6.69607 6.87191 7.34136 8.87381 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.005563 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.956136 B = 5032.255561 C = 6433.671782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.325 6.325 3 C 0.127 3.873 4 C -0.135 4.135 5 C -0.072 4.072 6 C -0.061 4.061 7 C -0.087 4.087 8 C 0.092 3.908 9 H -0.002 1.002 10 C -0.127 4.127 11 N -0.674 5.674 12 C 0.214 3.786 13 C -0.534 4.534 14 H 0.072 0.928 15 C -0.003 4.003 16 N -0.938 5.938 17 Si 0.976 3.024 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.026 4.026 22 N 0.032 4.968 23 O -0.203 6.203 24 O -0.147 6.147 25 C -0.111 4.111 26 H 0.068 0.932 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.188 0.812 30 H 0.184 0.816 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.332 0.668 37 H -0.002 1.002 38 H -0.061 1.061 39 H 0.264 0.736 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 -5.828 17.963 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.239 6.239 3 C 0.080 3.920 4 C -0.154 4.154 5 C -0.090 4.090 6 C -0.062 4.062 7 C -0.125 4.125 8 C -0.018 4.018 9 H 0.016 0.984 10 C -0.184 4.184 11 N -0.306 5.306 12 C 0.086 3.914 13 C -0.572 4.572 14 H 0.090 0.910 15 C -0.201 4.201 16 N -0.578 5.578 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.110 4.110 22 N 0.546 4.454 23 O -0.409 6.409 24 O -0.366 6.366 25 C -0.131 4.131 26 H 0.087 0.913 27 H 0.142 0.858 28 H 0.100 0.900 29 H 0.205 0.795 30 H 0.201 0.799 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.016 0.984 38 H -0.043 1.043 39 H 0.073 0.927 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.483 -5.503 17.741 21.329 hybrid contribution 0.557 -1.152 -1.113 1.696 sum -9.926 -6.654 16.628 20.477 Atomic orbital electron populations 1.23573 0.75038 1.06499 1.03186 1.86097 1.24496 1.25112 1.88166 1.18607 0.90358 0.86311 0.96713 1.22142 1.03188 0.90677 0.99360 1.21430 0.91283 1.00181 0.96126 1.20106 0.94987 0.94074 0.97070 1.21200 1.02169 0.91941 0.97147 1.21432 0.91966 0.96849 0.91567 0.98350 1.21657 0.99623 0.96492 1.00666 1.60739 1.08285 1.59442 1.02103 1.19152 0.95655 0.90753 0.85858 1.21505 0.96602 1.46523 0.92530 0.90980 1.26066 0.99353 0.94518 1.00133 1.70127 1.25990 1.48089 1.13611 0.85333 0.78530 0.79333 0.76802 1.18844 1.21159 1.18666 1.20729 0.78073 0.96830 1.15345 1.43756 1.04365 1.00047 0.97209 1.94506 1.65128 1.26148 1.55155 1.94446 1.74338 1.16020 1.51800 1.20089 0.93929 0.96785 1.02278 0.91305 0.85839 0.90005 0.79534 0.79879 0.86824 0.87099 0.95466 0.90725 0.90625 0.84934 0.98399 1.04302 0.92684 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -6.36 10.50 -92.46 -0.97 -7.33 16 3 C 0.13 2.82 6.69 22.51 0.15 2.97 16 4 C -0.14 -2.35 9.04 22.37 0.20 -2.14 16 5 C -0.07 -1.44 8.49 22.25 0.19 -1.25 16 6 C -0.06 -1.64 4.52 -19.85 -0.09 -1.73 16 7 C -0.09 -2.40 4.23 29.85 0.13 -2.27 16 8 C 0.09 3.42 2.03 44.92 0.09 3.51 16 9 H 0.00 -0.07 6.30 -2.39 -0.02 -0.08 16 10 C -0.13 -4.33 9.42 71.98 0.68 -3.66 16 11 N -0.67 -28.89 6.30 -495.58 -3.12 -32.01 16 12 C 0.21 11.95 5.24 85.56 0.45 12.39 16 13 C -0.53 -30.55 9.32 25.60 0.24 -30.31 16 14 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 15 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 16 N -0.94 -58.48 13.29 21.45 0.28 -58.20 16 17 Si 0.98 43.98 29.54 68.60 2.03 46.01 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 C -0.03 -0.82 6.73 36.36 0.24 -0.57 16 22 N 0.03 1.16 4.33 -46.51 -0.20 0.96 16 23 O -0.20 -7.68 18.46 18.89 0.35 -7.33 16 24 O -0.15 -5.27 13.67 18.89 0.26 -5.02 16 25 C -0.11 -3.09 9.50 22.36 0.21 -2.87 16 26 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 27 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.43 7.66 -2.39 -0.02 0.41 16 29 H 0.19 1.68 6.30 -2.91 -0.02 1.66 16 30 H 0.18 2.58 8.01 -2.91 -0.02 2.56 16 31 H 0.11 2.47 7.97 -2.39 -0.02 2.45 16 32 H 0.11 2.96 5.91 -2.39 -0.01 2.95 16 33 H 0.03 1.06 7.45 -2.39 -0.02 1.05 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.33 12.97 6.46 -89.69 -0.58 12.39 16 37 H 0.00 -0.13 7.44 -2.39 -0.02 -0.15 16 38 H -0.06 -3.81 8.06 -2.38 -0.02 -3.83 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.15 4.21 7.62 -2.91 -0.02 4.19 16 Total: -1.00 -75.62 335.25 3.18 -72.44 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.49 Total: 14.89 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.07 Total: -24.41 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -3.04 Total: -89.25 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.36 Total: -19.68 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -75.62 3.18 -72.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170294480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.716 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds