Wall clock time and date at job start Tue Mar 31 2020 07:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00018 * 2 1 4 4 C 1.38752 * 120.05196 * 0.25284 * 3 2 1 5 5 C 1.38134 * 119.93872 * 180.25987 * 4 3 2 6 6 C 1.38285 * 120.05743 * 359.48849 * 5 4 3 7 7 C 1.50694 * 119.94244 * 180.23599 * 6 5 4 8 8 C 1.53005 * 109.47053 * 100.27872 * 7 6 5 9 9 H 1.08993 * 109.47474 * 56.40954 * 8 7 6 10 10 C 1.52997 * 109.46937 * 176.41264 * 8 7 6 11 11 N 1.46508 * 109.46823 * 296.41061 * 8 7 6 12 12 C 1.46501 * 119.99790 * 299.77190 * 11 8 7 13 13 C 1.36936 * 119.99982 * 119.78027 * 11 8 7 14 14 H 1.07995 * 119.99887 * 16.74550 * 13 11 8 15 15 C 1.38816 * 119.99693 * 196.75094 * 13 11 8 16 16 N 1.31614 * 119.99824 * 17.92946 * 15 13 11 17 17 Si 1.86797 * 119.99820 * 197.92881 * 15 13 11 18 18 H 1.48504 * 109.47039 * 94.98644 * 17 15 13 19 19 H 1.48502 * 109.47364 * 214.98846 * 17 15 13 20 20 H 1.48504 * 109.47242 * 334.99263 * 17 15 13 21 21 C 1.38253 * 120.10917 * 0.25606 * 6 5 4 22 22 N 1.48004 * 119.96654 * 180.02562 * 21 6 5 23 23 O 1.21800 * 119.99165 * 186.13398 * 22 21 6 24 24 O 1.21792 * 120.00356 * 6.12493 * 22 21 6 25 25 C 1.38162 * 120.05438 * 0.02562 * 21 6 5 26 26 H 1.09005 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47209 * 299.99288 * 1 2 3 28 28 H 1.09000 * 109.47384 * 60.00241 * 1 2 3 29 29 H 1.07996 * 120.02931 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.96746 * 179.76968 * 5 4 3 31 31 H 1.09004 * 109.47267 * 220.27209 * 7 6 5 32 32 H 1.08990 * 109.47396 * 340.27612 * 7 6 5 33 33 H 1.08998 * 109.47687 * 59.99808 * 10 8 7 34 34 H 1.09005 * 109.47115 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.47206 * 299.99616 * 10 8 7 36 36 H 1.09007 * 109.46717 * 94.23002 * 12 11 8 37 37 H 1.08998 * 109.47142 * 214.23070 * 12 11 8 38 38 H 1.09001 * 109.47264 * 334.23475 * 12 11 8 39 39 H 0.97003 * 119.99620 * 180.02562 * 16 15 13 40 40 H 1.08002 * 120.02196 * 179.97438 * 25 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0053 5 6 1.9208 3.6048 -0.0001 6 6 3.3019 3.6759 -0.0002 7 6 3.9859 5.0186 -0.0007 8 6 4.4468 5.3568 1.4185 9 1 5.0935 4.5618 1.7897 10 6 5.2194 6.6772 1.4028 11 7 3.2788 5.4847 2.2937 12 6 2.2565 6.4944 2.0079 13 6 3.1429 4.6607 3.3789 14 1 3.9958 4.1124 3.7508 15 6 1.9087 4.5300 4.0008 16 7 0.8124 4.8953 3.3708 17 14 1.8041 3.8358 5.7318 18 1 1.7831 4.9512 6.7121 19 1 0.5624 3.0329 5.8690 20 1 2.9837 2.9716 5.9908 21 6 4.0560 2.5171 -0.0001 22 7 5.5338 2.5968 0.0004 23 8 6.1984 1.5823 -0.1122 24 8 6.0855 3.6768 0.1133 25 6 3.4311 1.2849 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2128 2.3203 0.0098 30 1 1.3339 4.5114 0.0002 31 1 4.8496 4.9861 -0.6650 32 1 3.2890 5.7813 -0.3478 33 1 4.5727 7.4723 1.0316 34 1 5.5473 6.9184 2.4139 35 1 6.0883 6.5821 0.7516 36 1 1.4564 6.0448 1.4198 37 1 1.8493 6.8745 2.9448 38 1 2.7032 7.3149 1.4464 39 1 -0.0499 4.8044 3.8056 40 1 4.0207 0.3800 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170345240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:06 Heat of formation + Delta-G solvation = 15.746766 kcal Electronic energy + Delta-G solvation = -25190.919416 eV Core-core repulsion = 21589.875802 eV Total energy + Delta-G solvation = -3601.043614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.76563 -39.96786 -37.93477 -36.40319 -35.87841 -32.88764 -31.49392 -30.89249 -29.22235 -27.82236 -26.15798 -26.05290 -25.16767 -23.12855 -22.28359 -21.44593 -19.20354 -18.84258 -18.18892 -17.09649 -16.89365 -16.69166 -16.10563 -15.70210 -15.33232 -15.08561 -14.11477 -13.77374 -13.65041 -13.45085 -12.88144 -12.51960 -12.51001 -12.32829 -11.98841 -11.86397 -11.53537 -11.23391 -11.04579 -10.95620 -10.91693 -10.82727 -10.68550 -10.44874 -10.34417 -10.21473 -10.06086 -9.79938 -9.70593 -9.10544 -8.60258 -8.01884 -6.87846 -5.84304 -3.14788 0.33788 1.51701 1.85441 1.93283 3.31464 3.32319 3.39448 3.41909 3.75567 4.43134 4.81261 4.98629 4.99961 5.08603 5.15507 5.28499 5.33139 5.39831 5.45008 5.47823 5.78144 5.85922 5.98352 6.10932 6.23881 6.29436 6.38643 6.41774 6.51299 6.52708 6.64783 6.74980 6.94164 6.99314 7.07063 7.33820 7.36600 7.59801 7.73672 8.22054 8.29034 9.15043 9.80120 10.26918 11.20145 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010761 B = 0.008442 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.376040 B = 3315.780441 C = 4698.221028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.111 3.889 4 C -0.146 4.146 5 C -0.039 4.039 6 C -0.011 4.011 7 C -0.106 4.106 8 C 0.181 3.819 9 H 0.068 0.932 10 C -0.154 4.154 11 N -0.591 5.591 12 C 0.160 3.840 13 C -0.236 4.236 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.280 1.280 21 C -0.017 4.017 22 N 0.041 4.959 23 O -0.198 6.198 24 O -0.153 6.153 25 C -0.099 4.099 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.024 0.976 37 H 0.046 0.954 38 H 0.002 0.998 39 H 0.251 0.749 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 -3.422 -9.262 9.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.065 3.935 4 C -0.165 4.165 5 C -0.058 4.058 6 C -0.014 4.014 7 C -0.146 4.146 8 C 0.073 3.927 9 H 0.087 0.913 10 C -0.213 4.213 11 N -0.312 5.312 12 C 0.015 3.985 13 C -0.366 4.366 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.544 5.544 17 Si 0.726 3.274 18 H -0.215 1.215 19 H -0.219 1.219 20 H -0.206 1.206 21 C -0.102 4.102 22 N 0.552 4.448 23 O -0.403 6.403 24 O -0.368 6.368 25 C -0.119 4.119 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.163 0.837 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.061 0.939 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.935 -3.704 -9.185 10.090 hybrid contribution -0.247 -0.346 1.191 1.265 sum -2.181 -4.050 -7.994 9.223 Atomic orbital electron populations 1.23082 0.78101 1.03886 1.01713 1.86024 1.21513 1.26197 1.89208 1.18404 0.90934 0.84706 0.99460 1.21541 1.00717 0.92102 1.02126 1.20818 0.92378 0.97924 0.94659 1.19607 0.93553 0.94087 0.94147 1.21631 0.99906 0.91377 1.01662 1.20429 0.89129 0.95879 0.87275 0.91340 1.22151 0.99396 0.98564 1.01218 1.44164 1.21674 1.37529 1.27873 1.20808 0.90089 0.88587 0.99008 1.19301 0.93832 1.20361 1.03078 0.91538 1.24773 0.95188 1.00762 0.98969 1.70090 0.96856 1.52002 1.35458 0.86346 0.77076 0.78491 0.85446 1.21507 1.21929 1.20552 1.20345 0.78756 0.95557 1.15545 1.43416 1.03545 1.00091 0.97727 1.94475 1.64589 1.26144 1.55121 1.94460 1.73861 1.16255 1.52270 1.19718 0.92304 0.96906 1.02981 0.88232 0.92158 0.92648 0.84505 0.83651 0.89479 0.91299 0.93440 0.92871 0.92967 0.95773 0.93492 0.98002 0.93916 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.64 10.50 -19.44 -0.20 -4.85 16 3 C 0.11 1.82 6.69 -39.22 -0.26 1.56 16 4 C -0.15 -2.36 9.04 -39.43 -0.36 -2.71 16 5 C -0.04 -0.70 9.66 -39.60 -0.38 -1.08 16 6 C -0.01 -0.21 4.83 -104.60 -0.51 -0.72 16 7 C -0.11 -1.90 4.04 -27.88 -0.11 -2.01 16 8 C 0.18 3.66 2.09 -67.93 -0.14 3.52 16 9 H 0.07 1.53 6.16 -51.93 -0.32 1.21 16 10 C -0.15 -2.71 9.18 37.16 0.34 -2.36 16 11 N -0.59 -13.70 2.50 -173.48 -0.43 -14.13 16 12 C 0.16 3.58 7.96 59.85 0.48 4.05 16 13 C -0.24 -6.21 9.65 -15.06 -0.15 -6.36 16 14 H 0.07 1.81 7.79 -52.49 -0.41 1.40 16 15 C 0.00 0.03 5.01 -17.43 -0.09 -0.05 16 16 N -0.90 -23.77 10.64 55.49 0.59 -23.18 16 17 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.02 -0.33 6.82 -79.98 -0.55 -0.87 16 22 N 0.04 0.80 4.45 33.95 0.15 0.95 16 23 O -0.20 -3.86 18.46 -29.46 -0.54 -4.40 16 24 O -0.15 -2.97 13.36 -29.46 -0.39 -3.36 16 25 C -0.10 -1.74 9.50 -39.44 -0.37 -2.12 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 28 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 29 H 0.14 1.88 6.30 -52.49 -0.33 1.54 16 30 H 0.15 2.57 6.88 -52.48 -0.36 2.21 16 31 H 0.09 1.48 6.11 -51.93 -0.32 1.16 16 32 H 0.07 1.16 7.41 -51.93 -0.39 0.78 16 33 H 0.05 0.79 6.65 -51.93 -0.35 0.44 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.56 6.38 -51.93 -0.33 0.23 16 37 H 0.05 1.17 6.98 -51.93 -0.36 0.81 16 38 H 0.00 0.03 6.42 -51.93 -0.33 -0.30 16 39 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 40 H 0.15 2.42 7.62 -52.49 -0.40 2.02 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -28.54 327.88 -7.12 -35.66 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.09 Total: -0.20 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.11 Total: -7.88 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.31 Total: -36.37 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.14 Total: -12.61 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.54 -7.12 -35.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170345240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.411 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds