Wall clock time and date at job start Tue Mar 31 2020 07:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00018 * 2 1 4 4 C 1.38752 * 120.05196 * 0.25284 * 3 2 1 5 5 C 1.38134 * 119.93872 * 180.25987 * 4 3 2 6 6 C 1.38285 * 120.05743 * 359.48849 * 5 4 3 7 7 C 1.50694 * 119.94244 * 180.23599 * 6 5 4 8 8 C 1.53005 * 109.47053 * 100.27872 * 7 6 5 9 9 H 1.08993 * 109.47474 * 56.40954 * 8 7 6 10 10 C 1.52997 * 109.46937 * 176.41264 * 8 7 6 11 11 N 1.46508 * 109.46823 * 296.41061 * 8 7 6 12 12 C 1.46501 * 119.99790 * 299.77190 * 11 8 7 13 13 C 1.36936 * 119.99982 * 119.78027 * 11 8 7 14 14 H 1.07995 * 119.99887 * 16.74550 * 13 11 8 15 15 C 1.38816 * 119.99693 * 196.75094 * 13 11 8 16 16 N 1.31614 * 119.99824 * 17.92946 * 15 13 11 17 17 Si 1.86797 * 119.99820 * 197.92881 * 15 13 11 18 18 H 1.48504 * 109.47039 * 94.98644 * 17 15 13 19 19 H 1.48502 * 109.47364 * 214.98846 * 17 15 13 20 20 H 1.48504 * 109.47242 * 334.99263 * 17 15 13 21 21 C 1.38253 * 120.10917 * 0.25606 * 6 5 4 22 22 N 1.48004 * 119.96654 * 180.02562 * 21 6 5 23 23 O 1.21800 * 119.99165 * 186.13398 * 22 21 6 24 24 O 1.21792 * 120.00356 * 6.12493 * 22 21 6 25 25 C 1.38162 * 120.05438 * 0.02562 * 21 6 5 26 26 H 1.09005 * 109.46849 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47209 * 299.99288 * 1 2 3 28 28 H 1.09000 * 109.47384 * 60.00241 * 1 2 3 29 29 H 1.07996 * 120.02931 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.96746 * 179.76968 * 5 4 3 31 31 H 1.09004 * 109.47267 * 220.27209 * 7 6 5 32 32 H 1.08990 * 109.47396 * 340.27612 * 7 6 5 33 33 H 1.08998 * 109.47687 * 59.99808 * 10 8 7 34 34 H 1.09005 * 109.47115 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.47206 * 299.99616 * 10 8 7 36 36 H 1.09007 * 109.46717 * 94.23002 * 12 11 8 37 37 H 1.08998 * 109.47142 * 214.23070 * 12 11 8 38 38 H 1.09001 * 109.47264 * 334.23475 * 12 11 8 39 39 H 0.97003 * 119.99620 * 180.02562 * 16 15 13 40 40 H 1.08002 * 120.02196 * 179.97438 * 25 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0053 5 6 1.9208 3.6048 -0.0001 6 6 3.3019 3.6759 -0.0002 7 6 3.9859 5.0186 -0.0007 8 6 4.4468 5.3568 1.4185 9 1 5.0935 4.5618 1.7897 10 6 5.2194 6.6772 1.4028 11 7 3.2788 5.4847 2.2937 12 6 2.2565 6.4944 2.0079 13 6 3.1429 4.6607 3.3789 14 1 3.9958 4.1124 3.7508 15 6 1.9087 4.5300 4.0008 16 7 0.8124 4.8953 3.3708 17 14 1.8041 3.8358 5.7318 18 1 1.7831 4.9512 6.7121 19 1 0.5624 3.0329 5.8690 20 1 2.9837 2.9716 5.9908 21 6 4.0560 2.5171 -0.0001 22 7 5.5338 2.5968 0.0004 23 8 6.1984 1.5823 -0.1122 24 8 6.0855 3.6768 0.1133 25 6 3.4311 1.2849 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2128 2.3203 0.0098 30 1 1.3339 4.5114 0.0002 31 1 4.8496 4.9861 -0.6650 32 1 3.2890 5.7813 -0.3478 33 1 4.5727 7.4723 1.0316 34 1 5.5473 6.9184 2.4139 35 1 6.0883 6.5821 0.7516 36 1 1.4564 6.0448 1.4198 37 1 1.8493 6.8745 2.9448 38 1 2.7032 7.3149 1.4464 39 1 -0.0499 4.8044 3.8056 40 1 4.0207 0.3800 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170345240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:05 Heat of formation + Delta-G solvation = 1.400064 kcal Electronic energy + Delta-G solvation = -25191.541535 eV Core-core repulsion = 21589.875802 eV Total energy + Delta-G solvation = -3601.665733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.29674 -41.26136 -39.31744 -37.90848 -37.48967 -34.61563 -32.88987 -32.42313 -30.85500 -28.97644 -27.96945 -27.37004 -26.57615 -24.89591 -23.71303 -22.86288 -20.80050 -20.22083 -19.71930 -18.85032 -18.52667 -18.00344 -17.46323 -16.87524 -16.77143 -16.70711 -15.85147 -15.20800 -15.02832 -15.00009 -14.48100 -14.00569 -13.87152 -13.54938 -13.49126 -13.33592 -13.14245 -12.81771 -12.58228 -12.47168 -12.41871 -12.36227 -12.27708 -12.13478 -12.00793 -11.82823 -11.69476 -11.49700 -11.30455 -10.55729 -10.47830 -9.36551 -8.72489 -7.79020 -5.14085 -1.10472 0.14917 0.38104 0.47018 1.39843 1.44488 1.49427 2.18455 2.38245 2.50803 3.33205 3.46226 3.61071 3.73030 3.76508 3.88864 4.04425 4.30119 4.34068 4.36000 4.47338 4.55197 4.63444 4.70571 4.78859 4.87920 4.92688 4.96493 5.03477 5.12794 5.21808 5.24557 5.40051 5.44829 5.56564 5.62930 5.67540 5.83382 6.17118 6.36169 6.67927 7.22737 7.96843 8.37460 9.22653 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010761 B = 0.008442 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.376040 B = 3315.780441 C = 4698.221028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.118 3.882 4 C -0.139 4.139 5 C -0.049 4.049 6 C -0.023 4.023 7 C -0.098 4.098 8 C 0.180 3.820 9 H 0.042 0.958 10 C -0.147 4.147 11 N -0.601 5.601 12 C 0.175 3.825 13 C -0.248 4.248 14 H 0.046 0.954 15 C -0.032 4.032 16 N -0.912 5.912 17 Si 0.938 3.062 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.286 1.286 21 C -0.029 4.029 22 N 0.038 4.962 23 O -0.202 6.202 24 O -0.150 6.150 25 C -0.111 4.111 26 H 0.129 0.871 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.029 0.971 39 H 0.246 0.754 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -3.880 -10.506 11.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.072 3.928 4 C -0.158 4.158 5 C -0.068 4.068 6 C -0.025 4.025 7 C -0.137 4.137 8 C 0.073 3.927 9 H 0.061 0.939 10 C -0.206 4.206 11 N -0.324 5.324 12 C 0.031 3.969 13 C -0.379 4.379 14 H 0.064 0.936 15 C -0.229 4.229 16 N -0.559 5.559 17 Si 0.768 3.232 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.212 1.212 21 C -0.113 4.113 22 N 0.551 4.449 23 O -0.408 6.408 24 O -0.368 6.368 25 C -0.130 4.130 26 H 0.147 0.853 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.181 0.819 30 H 0.164 0.836 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.552 -4.183 -10.452 11.544 hybrid contribution -0.029 -0.362 1.450 1.495 sum -2.580 -4.546 -9.002 10.410 Atomic orbital electron populations 1.23460 0.75684 1.06208 1.02462 1.86039 1.23925 1.25112 1.88676 1.18473 0.90672 0.85594 0.98061 1.21859 1.02166 0.91411 1.00324 1.20925 0.92114 0.98664 0.95088 1.19790 0.94076 0.94297 0.94375 1.21502 1.00502 0.91494 1.00213 1.20424 0.87915 0.96429 0.87895 0.93940 1.22067 1.00038 0.97309 1.01150 1.44152 1.22545 1.37519 1.28180 1.20576 0.89886 0.88965 0.97484 1.19220 0.93137 1.20851 1.04677 0.93606 1.25145 0.95225 1.01730 1.00779 1.70163 0.96595 1.53377 1.35783 0.85704 0.76477 0.77713 0.83259 1.21803 1.21948 1.21173 1.20549 0.78247 0.96349 1.16131 1.43574 1.03997 1.00027 0.97293 1.94468 1.64869 1.26168 1.55268 1.94445 1.74129 1.16258 1.51973 1.19934 0.93205 0.96793 1.03103 0.85328 0.92563 0.90627 0.81867 0.83619 0.88482 0.90021 0.92285 0.94035 0.90826 0.96617 0.96630 0.95278 0.94433 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -8.73 10.50 -92.46 -0.97 -9.70 16 3 C 0.12 3.68 6.69 22.51 0.15 3.83 16 4 C -0.14 -4.21 9.04 22.37 0.20 -4.01 16 5 C -0.05 -1.68 9.66 22.26 0.22 -1.47 16 6 C -0.02 -0.85 4.83 -19.85 -0.10 -0.94 16 7 C -0.10 -3.36 4.04 29.85 0.12 -3.24 16 8 C 0.18 7.15 2.09 44.99 0.09 7.24 16 9 H 0.04 1.90 6.16 -2.39 -0.01 1.88 16 10 C -0.15 -4.91 9.18 71.98 0.66 -4.25 16 11 N -0.60 -27.80 2.50 -702.76 -1.75 -29.55 16 12 C 0.18 7.77 7.96 127.77 1.02 8.78 16 13 C -0.25 -13.23 9.65 84.03 0.81 -12.42 16 14 H 0.05 2.58 7.79 -2.91 -0.02 2.55 16 15 C -0.03 -1.72 5.01 84.86 0.43 -1.29 16 16 N -0.91 -48.40 10.64 21.65 0.23 -48.17 16 17 Si 0.94 44.53 29.59 68.60 2.03 46.56 16 18 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 21 C -0.03 -1.06 6.82 36.36 0.25 -0.82 16 22 N 0.04 1.46 4.45 -46.51 -0.21 1.26 16 23 O -0.20 -7.74 18.46 18.89 0.35 -7.39 16 24 O -0.15 -5.69 13.36 18.90 0.25 -5.44 16 25 C -0.11 -3.76 9.50 22.36 0.21 -3.55 16 26 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.06 1.08 7.65 -2.39 -0.02 1.06 16 28 H 0.08 1.07 7.67 -2.39 -0.02 1.05 16 29 H 0.16 4.00 6.30 -2.91 -0.02 3.98 16 30 H 0.15 4.97 6.88 -2.91 -0.02 4.95 16 31 H 0.10 3.11 6.11 -2.38 -0.01 3.09 16 32 H 0.08 2.58 7.41 -2.39 -0.02 2.57 16 33 H 0.06 1.82 6.65 -2.39 -0.02 1.81 16 34 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.02 0.72 6.38 -2.38 -0.02 0.70 16 37 H 0.01 0.76 6.98 -2.39 -0.02 0.74 16 38 H 0.03 1.10 6.42 -2.39 -0.02 1.08 16 39 H 0.25 12.88 8.31 -92.71 -0.77 12.11 16 40 H 0.16 4.95 7.62 -2.91 -0.02 4.93 16 Total: -1.00 -60.89 327.88 6.16 -54.72 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.06 Total: 8.47 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.17 Total: -10.75 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.73 Total: -76.47 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.37 Total: -22.53 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.89 6.16 -54.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170345240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.124 kcal (2) G-P(sol) polarization free energy of solvation -60.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds