Wall clock time and date at job start Tue Mar 31 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 C 1.52996 * 109.47018 * 243.07799 * 3 2 1 5 5 N 1.46503 * 109.46994 * 129.43041 * 4 3 2 6 6 C 1.36657 * 120.00156 * 5.64664 * 5 4 3 7 7 H 1.08001 * 119.99887 * 45.81124 * 6 5 4 8 8 C 1.39190 * 120.00306 * 225.81394 * 6 5 4 9 9 N 1.31270 * 119.99884 * 28.43902 * 8 6 5 10 10 Si 1.86796 * 120.00352 * 208.44307 * 8 6 5 11 11 H 1.48501 * 109.46885 * 64.99572 * 10 8 6 12 12 H 1.48496 * 109.47332 * 185.00040 * 10 8 6 13 13 H 1.48499 * 109.46971 * 305.00007 * 10 8 6 14 14 C 1.34784 * 119.99758 * 185.65248 * 5 4 3 15 15 O 1.21564 * 119.99537 * 177.62651 * 14 5 4 16 16 C 1.48012 * 119.99975 * 357.62015 * 14 5 4 17 17 N 1.30587 * 120.00186 * 289.63007 * 16 14 5 18 18 O 1.41598 * 119.99967 * 338.14459 * 17 16 14 19 19 C 1.42901 * 114.00046 * 169.28347 * 18 17 16 20 20 C 1.47360 * 119.99562 * 109.63160 * 16 14 5 21 21 C 1.36251 * 125.95427 * 180.02562 * 20 16 14 22 22 C 1.40714 * 106.73013 * 179.97438 * 21 20 16 23 23 C 1.34900 * 107.06122 * 0.02562 * 22 21 20 24 24 O 1.34206 * 108.71665 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47271 * 60.00155 * 1 2 3 26 26 H 1.09006 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47211 * 299.99597 * 1 2 3 28 28 H 1.09005 * 109.47304 * 240.00170 * 2 1 3 29 29 H 1.09004 * 109.47131 * 120.00370 * 2 1 3 30 30 H 1.09002 * 109.47030 * 123.07531 * 3 2 1 31 31 H 1.08997 * 109.46935 * 3.07828 * 3 2 1 32 32 H 1.08998 * 109.47569 * 9.42303 * 4 3 2 33 33 H 1.09005 * 109.47162 * 249.42552 * 4 3 2 34 34 H 0.96998 * 120.00054 * 184.97600 * 9 8 6 35 35 H 1.09001 * 109.47418 * 198.88766 * 19 18 17 36 36 H 1.08995 * 109.47139 * 318.89750 * 19 18 17 37 37 H 1.09005 * 109.47003 * 78.89514 * 19 18 17 38 38 H 1.08007 * 126.63746 * 359.97438 * 21 20 16 39 39 H 1.08000 * 126.46392 * 180.25871 * 22 21 20 40 40 H 1.08007 * 125.63983 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.8257 1.7056 -1.2861 5 7 2.3306 2.9306 -1.9190 6 6 1.3950 3.6978 -1.2837 7 1 1.5109 3.9335 -0.2361 8 6 0.2927 4.1754 -1.9866 9 7 -0.1709 3.5043 -3.0152 10 14 -0.5269 5.7714 -1.4666 11 1 0.4194 6.8995 -1.6593 12 1 -1.7405 5.9966 -2.2922 13 1 -0.9111 5.6868 -0.0347 14 6 2.7977 3.3008 -3.1278 15 8 2.3556 4.2938 -3.6722 16 6 3.8491 2.4985 -3.7924 17 7 5.0663 2.4973 -3.3196 18 8 5.5090 3.5647 -2.5012 19 6 6.7631 3.3240 -1.8599 20 6 3.5221 1.7011 -4.9877 21 6 4.3904 0.9220 -5.6917 22 6 3.6562 0.3479 -6.7459 23 6 2.3894 0.7988 -6.6374 24 8 2.3125 1.6160 -5.5756 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.6899 1.5981 0.8612 31 1 1.1936 2.1271 0.0552 32 1 2.6966 0.8660 -1.9691 33 1 3.8833 1.8213 -1.0486 34 1 -0.8925 3.8722 -3.5489 35 1 6.8762 4.0044 -1.0159 36 1 6.7975 2.2944 -1.5039 37 1 7.5725 3.4897 -2.5710 38 1 5.4393 0.7737 -5.4813 39 1 4.0345 -0.3291 -7.4975 40 1 1.5723 0.5448 -7.2966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177350731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:26 Heat of formation + Delta-G solvation = 18.137115 kcal Electronic energy + Delta-G solvation = -24816.024020 eV Core-core repulsion = 21215.084060 eV Total energy + Delta-G solvation = -3600.939960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22721 -38.72207 -36.89732 -35.57240 -33.90840 -33.21684 -32.55756 -31.57784 -29.05644 -27.94213 -26.37294 -25.50909 -23.59621 -22.60840 -21.42627 -20.69699 -20.30641 -19.18906 -17.38806 -17.22524 -15.99947 -15.73544 -15.43564 -15.10558 -14.82973 -14.75539 -14.45386 -14.07487 -13.50308 -13.34591 -12.97407 -12.64766 -12.60158 -12.35685 -12.13349 -12.07023 -11.72955 -11.50421 -11.41510 -11.02081 -10.86476 -10.72641 -10.48645 -10.28071 -10.18475 -10.09834 -9.78381 -9.74381 -9.50991 -8.65593 -8.21325 -7.84946 -7.22011 -6.19188 -3.90206 1.08142 2.33435 2.65639 3.14147 3.31989 3.40788 3.48383 3.75664 3.94541 4.35948 4.63430 5.10774 5.17801 5.19257 5.30642 5.43664 5.53268 5.57570 5.58224 5.67022 5.74957 5.82942 5.93196 6.04154 6.05927 6.16511 6.20553 6.22962 6.38787 6.49220 6.53184 6.64008 6.68594 6.77584 6.91550 7.30085 7.31282 7.58218 7.67483 8.21067 8.92722 9.03413 9.53881 10.10895 10.86063 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.006726 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.364294 B = 4162.246746 C = 4301.508208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.137 4.137 4 C 0.106 3.894 5 N -0.426 5.426 6 C -0.355 4.355 7 H 0.084 0.916 8 C 0.088 3.912 9 N -0.816 5.816 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.491 3.509 15 O -0.529 6.529 16 C 0.211 3.789 17 N -0.319 5.319 18 O -0.211 6.211 19 C 0.041 3.959 20 C 0.039 3.961 21 C -0.157 4.157 22 C -0.228 4.228 23 C -0.015 4.015 24 O -0.138 6.138 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 -8.581 -1.036 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.174 4.174 4 C -0.017 4.017 5 N -0.148 5.148 6 C -0.481 4.481 7 H 0.101 0.899 8 C -0.125 4.125 9 N -0.447 5.447 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.275 3.725 15 O -0.406 6.406 16 C 0.020 3.980 17 N -0.070 5.070 18 O -0.227 6.227 19 C -0.056 4.056 20 C -0.014 4.014 21 C -0.180 4.180 22 C -0.247 4.247 23 C -0.086 4.086 24 O -0.030 6.030 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.190 -8.197 -1.161 10.965 hybrid contribution -0.608 0.762 0.214 0.998 sum 6.581 -7.435 -0.947 9.975 Atomic orbital electron populations 1.21804 0.95829 1.00155 1.02711 1.21613 0.96371 0.96905 1.00474 1.22083 1.02457 0.97379 0.95468 1.21757 0.96222 0.88812 0.94898 1.43071 1.36190 1.19415 1.16172 1.18612 1.01082 1.31860 0.96540 0.89861 1.25201 0.94301 0.97055 0.95935 1.69914 1.23098 1.34347 1.17351 0.86495 0.78210 0.84695 0.78068 1.19820 1.21258 1.20128 1.18260 0.83687 0.86073 0.84519 1.90639 1.58858 1.27545 1.63538 1.22143 0.92855 0.92253 0.90791 1.76931 1.15366 1.08098 1.06579 1.90120 1.38408 1.30081 1.64127 1.22744 0.84664 1.01772 0.96416 1.19210 0.83859 1.02790 0.95506 1.21896 1.00816 0.99012 0.96248 1.21728 0.93910 1.06560 1.02511 1.24325 0.99489 0.94044 0.90708 1.84303 1.31072 1.52669 1.34957 0.91436 0.94148 0.93163 0.92656 0.93357 0.93224 0.86642 0.93801 0.94655 0.92258 0.89265 0.92641 0.93495 0.82737 0.83086 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.60 37.16 0.36 -2.08 16 2 C -0.12 -1.90 6.30 -26.73 -0.17 -2.07 16 3 C -0.14 -2.61 5.59 -26.73 -0.15 -2.76 16 4 C 0.11 2.29 5.56 -4.04 -0.02 2.27 16 5 N -0.43 -11.11 2.87 -115.84 -0.33 -11.44 16 6 C -0.36 -9.72 6.97 -15.05 -0.10 -9.83 16 7 H 0.08 2.19 7.19 -52.49 -0.38 1.81 16 8 C 0.09 2.47 4.03 -17.44 -0.07 2.40 16 9 N -0.82 -23.76 12.60 55.51 0.70 -23.06 16 10 Si 0.90 22.00 29.64 -169.99 -5.04 16.96 16 11 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.49 13.39 6.00 -12.25 -0.07 13.31 16 15 O -0.53 -16.53 15.27 5.31 0.08 -16.45 16 16 C 0.21 4.85 5.45 -80.68 -0.44 4.41 16 17 N -0.32 -6.57 10.68 34.57 0.37 -6.20 16 18 O -0.21 -4.32 11.12 -11.47 -0.13 -4.45 16 19 C 0.04 0.58 11.48 101.05 1.16 1.74 16 20 C 0.04 0.79 7.07 -36.59 -0.26 0.53 16 21 C -0.16 -2.56 10.59 -39.36 -0.42 -2.97 16 22 C -0.23 -3.11 10.88 -39.83 -0.43 -3.54 16 23 C -0.01 -0.22 12.08 29.55 0.36 0.14 16 24 O -0.14 -2.88 10.55 4.71 0.05 -2.83 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.92 6.97 -51.93 -0.36 0.55 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.12 2.52 4.73 -51.93 -0.25 2.28 16 32 H 0.04 0.95 6.79 -51.93 -0.35 0.59 16 33 H 0.04 0.73 7.78 -51.93 -0.40 0.32 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.15 2.20 8.06 -52.48 -0.42 1.78 16 39 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.21 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -34.39 346.73 -4.86 -39.26 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.53 Total: 1.43 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.26 Total: 1.55 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.74 Total: -40.70 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.00 Total: -23.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.04 Total: 16.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.39 -4.86 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177350731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.396 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds