Wall clock time and date at job start Tue Mar 31 2020 06:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47199 * 2 1 4 4 C 1.52996 * 109.47018 * 243.07799 * 3 2 1 5 5 N 1.46503 * 109.46994 * 129.43041 * 4 3 2 6 6 C 1.36657 * 120.00156 * 5.64664 * 5 4 3 7 7 H 1.08001 * 119.99887 * 45.81124 * 6 5 4 8 8 C 1.39190 * 120.00306 * 225.81394 * 6 5 4 9 9 N 1.31270 * 119.99884 * 28.43902 * 8 6 5 10 10 Si 1.86796 * 120.00352 * 208.44307 * 8 6 5 11 11 H 1.48501 * 109.46885 * 64.99572 * 10 8 6 12 12 H 1.48496 * 109.47332 * 185.00040 * 10 8 6 13 13 H 1.48499 * 109.46971 * 305.00007 * 10 8 6 14 14 C 1.34784 * 119.99758 * 185.65248 * 5 4 3 15 15 O 1.21564 * 119.99537 * 177.62651 * 14 5 4 16 16 C 1.48012 * 119.99975 * 357.62015 * 14 5 4 17 17 N 1.30587 * 120.00186 * 289.63007 * 16 14 5 18 18 O 1.41598 * 119.99967 * 338.14459 * 17 16 14 19 19 C 1.42901 * 114.00046 * 169.28347 * 18 17 16 20 20 C 1.47360 * 119.99562 * 109.63160 * 16 14 5 21 21 C 1.36251 * 125.95427 * 180.02562 * 20 16 14 22 22 C 1.40714 * 106.73013 * 179.97438 * 21 20 16 23 23 C 1.34900 * 107.06122 * 0.02562 * 22 21 20 24 24 O 1.34206 * 108.71665 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47271 * 60.00155 * 1 2 3 26 26 H 1.09006 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47211 * 299.99597 * 1 2 3 28 28 H 1.09005 * 109.47304 * 240.00170 * 2 1 3 29 29 H 1.09004 * 109.47131 * 120.00370 * 2 1 3 30 30 H 1.09002 * 109.47030 * 123.07531 * 3 2 1 31 31 H 1.08997 * 109.46935 * 3.07828 * 3 2 1 32 32 H 1.08998 * 109.47569 * 9.42303 * 4 3 2 33 33 H 1.09005 * 109.47162 * 249.42552 * 4 3 2 34 34 H 0.96998 * 120.00054 * 184.97600 * 9 8 6 35 35 H 1.09001 * 109.47418 * 198.88766 * 19 18 17 36 36 H 1.08995 * 109.47139 * 318.89750 * 19 18 17 37 37 H 1.09005 * 109.47003 * 78.89514 * 19 18 17 38 38 H 1.08007 * 126.63746 * 359.97438 * 21 20 16 39 39 H 1.08000 * 126.46392 * 180.25871 * 22 21 20 40 40 H 1.08007 * 125.63983 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.8257 1.7056 -1.2861 5 7 2.3306 2.9306 -1.9190 6 6 1.3950 3.6978 -1.2837 7 1 1.5109 3.9335 -0.2361 8 6 0.2927 4.1754 -1.9866 9 7 -0.1709 3.5043 -3.0152 10 14 -0.5269 5.7714 -1.4666 11 1 0.4194 6.8995 -1.6593 12 1 -1.7405 5.9966 -2.2922 13 1 -0.9111 5.6868 -0.0347 14 6 2.7977 3.3008 -3.1278 15 8 2.3556 4.2938 -3.6722 16 6 3.8491 2.4985 -3.7924 17 7 5.0663 2.4973 -3.3196 18 8 5.5090 3.5647 -2.5012 19 6 6.7631 3.3240 -1.8599 20 6 3.5221 1.7011 -4.9877 21 6 4.3904 0.9220 -5.6917 22 6 3.6562 0.3479 -6.7459 23 6 2.3894 0.7988 -6.6374 24 8 2.3125 1.6160 -5.5756 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.6899 1.5981 0.8612 31 1 1.1936 2.1271 0.0552 32 1 2.6966 0.8660 -1.9691 33 1 3.8833 1.8213 -1.0486 34 1 -0.8925 3.8722 -3.5489 35 1 6.8762 4.0044 -1.0159 36 1 6.7975 2.2944 -1.5039 37 1 7.5725 3.4897 -2.5710 38 1 5.4393 0.7737 -5.4813 39 1 4.0345 -0.3291 -7.4975 40 1 1.5723 0.5448 -7.2966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177350731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:25 Heat of formation + Delta-G solvation = -5.282836 kcal Electronic energy + Delta-G solvation = -24817.039585 eV Core-core repulsion = 21215.084060 eV Total energy + Delta-G solvation = -3601.955526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.54529 -40.64344 -38.44629 -37.37087 -35.49907 -35.00607 -33.92477 -33.48275 -30.35265 -29.58426 -27.95799 -27.16622 -25.20751 -24.16149 -22.73056 -22.33826 -21.85913 -20.73776 -19.21098 -18.58973 -17.95822 -17.19089 -17.08125 -16.64508 -16.35160 -16.23121 -16.19196 -15.89463 -15.16551 -15.04009 -14.49861 -13.97472 -13.86362 -13.80522 -13.60769 -13.43498 -13.36212 -13.19322 -13.04080 -12.75987 -12.64696 -12.64299 -12.17559 -12.05384 -11.74845 -11.53316 -11.34026 -11.19356 -10.84347 -10.71336 -10.11789 -9.31163 -9.25965 -8.30584 -6.04264 -0.42576 0.96975 1.33377 1.38570 1.44356 1.48461 1.76738 1.95262 2.36762 2.49051 2.80382 3.13239 3.63282 3.93247 3.97691 4.04985 4.14004 4.21689 4.30747 4.44876 4.51039 4.52648 4.59642 4.65598 4.71899 4.72650 4.95257 5.00176 5.01936 5.06162 5.08840 5.18186 5.36981 5.43827 5.48078 5.55086 5.72631 5.97883 6.09651 6.23999 6.85429 6.97986 7.47013 8.05710 8.74570 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.006726 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.364294 B = 4162.246746 C = 4301.508208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.132 4.132 4 C 0.109 3.891 5 N -0.435 5.435 6 C -0.366 4.366 7 H 0.090 0.910 8 C 0.043 3.957 9 N -0.849 5.849 10 Si 0.953 3.047 11 H -0.290 1.290 12 H -0.284 1.284 13 H -0.248 1.248 14 C 0.480 3.520 15 O -0.588 6.588 16 C 0.197 3.803 17 N -0.301 5.301 18 O -0.246 6.246 19 C 0.032 3.968 20 C -0.019 4.019 21 C -0.129 4.129 22 C -0.215 4.215 23 C -0.012 4.012 24 O -0.186 6.186 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.176 0.824 39 H 0.198 0.802 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.422 -10.638 -0.738 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.170 4.170 4 C -0.013 4.013 5 N -0.155 5.155 6 C -0.492 4.492 7 H 0.107 0.893 8 C -0.167 4.167 9 N -0.482 5.482 10 Si 0.777 3.223 11 H -0.217 1.217 12 H -0.209 1.209 13 H -0.172 1.172 14 C 0.265 3.735 15 O -0.469 6.469 16 C 0.006 3.994 17 N -0.050 5.050 18 O -0.264 6.264 19 C -0.064 4.064 20 C -0.070 4.070 21 C -0.152 4.152 22 C -0.233 4.233 23 C -0.082 4.082 24 O -0.081 6.081 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.193 0.807 39 H 0.215 0.785 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 8.500 -10.293 -0.808 13.373 hybrid contribution -0.888 1.324 0.091 1.597 sum 7.611 -8.969 -0.717 11.785 Atomic orbital electron populations 1.21744 0.96039 1.01285 1.00986 1.21584 0.96095 0.95167 1.01974 1.22040 1.01415 0.98648 0.94882 1.21899 0.96994 0.86842 0.95613 1.43336 1.35596 1.20481 1.16134 1.18899 1.01147 1.32244 0.96932 0.89260 1.25979 0.95106 0.99474 0.96096 1.69999 1.23901 1.35537 1.18741 0.85651 0.76919 0.80387 0.79301 1.21669 1.20910 1.17190 1.18971 0.84026 0.85817 0.84655 1.90568 1.61216 1.30060 1.65034 1.22059 0.92038 0.93034 0.92258 1.76906 1.13683 1.07921 1.06524 1.90102 1.41094 1.30780 1.64444 1.23108 0.82756 1.03221 0.97277 1.19289 0.85105 1.06084 0.96534 1.22278 1.01203 0.96397 0.95283 1.22216 0.92720 1.06171 1.02199 1.25358 1.01636 0.92027 0.89176 1.84266 1.32073 1.54738 1.37057 0.95504 0.91570 0.92505 0.92955 0.89902 0.90930 0.89487 0.94155 0.93643 0.92774 0.87135 0.91369 0.91606 0.80676 0.78451 0.73877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 9.60 71.98 0.69 -3.91 16 2 C -0.11 -3.45 6.30 30.59 0.19 -3.25 16 3 C -0.13 -4.99 5.59 30.59 0.17 -4.81 16 4 C 0.11 4.75 5.56 86.38 0.48 5.23 16 5 N -0.43 -23.47 2.87 -638.68 -1.84 -25.31 16 6 C -0.37 -20.71 6.97 84.17 0.59 -20.12 16 7 H 0.09 4.80 7.19 -2.91 -0.02 4.78 16 8 C 0.04 2.50 4.03 85.01 0.34 2.84 16 9 N -0.85 -51.86 12.60 21.70 0.27 -51.59 16 10 Si 0.95 46.50 29.64 68.60 2.03 48.53 16 11 H -0.29 -14.87 7.11 99.48 0.71 -14.17 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.25 -10.87 7.11 99.48 0.71 -10.16 16 14 C 0.48 27.40 6.00 86.83 0.52 27.92 16 15 O -0.59 -38.89 15.27 -3.92 -0.06 -38.95 16 16 C 0.20 9.32 5.45 44.33 0.24 9.56 16 17 N -0.30 -12.44 10.68 -44.55 -0.48 -12.92 16 18 O -0.25 -10.13 11.12 -38.78 -0.43 -10.57 16 19 C 0.03 0.86 11.48 113.37 1.30 2.16 16 20 C -0.02 -0.80 7.07 24.21 0.17 -0.63 16 21 C -0.13 -3.96 10.59 22.41 0.24 -3.73 16 22 C -0.21 -5.13 10.88 22.11 0.24 -4.89 16 23 C -0.01 -0.35 12.08 67.05 0.81 0.46 16 24 O -0.19 -7.99 10.55 -6.07 -0.06 -8.06 16 25 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.66 6.97 -2.38 -0.02 1.65 16 29 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.09 3.85 4.73 -2.39 -0.01 3.84 16 32 H 0.04 1.78 6.79 -2.39 -0.02 1.76 16 33 H 0.05 1.87 7.78 -2.38 -0.02 1.85 16 34 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.18 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.25 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -81.05 346.73 6.47 -74.58 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.04 Total: 17.45 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 5.99 Total: 6.82 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -2.04 Total: -89.82 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: -0.55 Total: -57.57 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -81.05 6.47 -74.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177350731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.299 kcal (2) G-P(sol) polarization free energy of solvation -81.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds