Wall clock time and date at job start Tue Mar 31 2020 06:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47355 * 2 1 4 4 H 1.09000 * 109.47002 * 304.99935 * 3 2 1 5 5 C 1.50693 * 109.47377 * 184.99296 * 3 2 1 6 6 H 1.07998 * 120.00518 * 239.99642 * 5 3 2 7 7 C 1.37878 * 119.99648 * 60.00265 * 5 3 2 8 8 N 1.31512 * 120.00187 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99949 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47154 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46929 * 120.00076 * 9 7 5 12 12 H 1.48507 * 109.47187 * 239.99779 * 9 7 5 13 13 N 1.46501 * 109.46657 * 64.99386 * 3 2 1 14 14 C 1.34776 * 120.00353 * 274.99869 * 13 3 2 15 15 O 1.21622 * 119.99887 * 0.02562 * 14 13 3 16 16 C 1.47265 * 119.99873 * 180.02562 * 14 13 3 17 17 C 1.46684 * 126.94476 * 359.97438 * 16 14 13 18 18 C 1.34490 * 106.33141 * 179.77602 * 17 16 14 19 19 N 1.36447 * 108.85736 * 0.36336 * 18 17 16 20 20 C 1.46499 * 124.85090 * 179.87977 * 19 18 17 21 21 C 1.34665 * 110.29733 * 359.62183 * 19 18 17 22 22 C 1.50692 * 125.80210 * 180.22538 * 21 19 18 23 23 C 1.50705 * 109.47277 * 90.02087 * 22 21 19 24 24 O 1.20823 * 119.99599 * 359.97438 * 23 22 21 25 25 O 1.34222 * 120.00072 * 180.02562 * 23 22 21 26 26 H 1.08995 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47247 * 300.00267 * 1 2 3 28 28 H 1.09002 * 109.46639 * 60.00400 * 1 2 3 29 29 H 1.09002 * 109.47474 * 240.00037 * 2 1 3 30 30 H 1.09002 * 109.46639 * 119.99600 * 2 1 3 31 31 H 0.97001 * 120.00575 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99829 * 95.00510 * 13 3 2 33 33 H 1.07995 * 126.83314 * 0.02562 * 17 16 14 34 34 H 1.07996 * 125.57217 * 180.21391 * 18 17 16 35 35 H 1.09002 * 109.47391 * 269.70126 * 20 19 18 36 36 H 1.09001 * 109.46813 * 149.70182 * 20 19 18 37 37 H 1.09004 * 109.47041 * 29.70309 * 20 19 18 38 38 H 1.08993 * 109.47453 * 210.02559 * 22 21 19 39 39 H 1.09006 * 109.47352 * 330.02275 * 22 21 19 40 40 H 0.96700 * 117.00494 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4064 0.3366 -2.1727 9 14 6.0050 0.8812 -1.3815 10 1 6.5987 1.5473 -0.1944 11 1 6.4971 -0.5176 -1.4626 12 1 6.3992 1.6166 -2.6100 13 7 1.6523 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3418 2.6319 0.4316 16 6 0.0456 3.3232 2.6250 17 6 0.8560 3.4505 3.8411 18 6 0.1035 4.1259 4.7279 19 7 -1.1012 4.4136 4.1555 20 6 -2.1895 5.1393 4.8152 21 6 -1.1448 3.9399 2.8957 22 6 -2.3075 4.0677 1.9456 23 6 -2.1673 5.3389 1.1483 24 8 -1.2207 6.0665 1.3330 25 8 -3.0947 5.6631 0.2337 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8295 -0.0619 -2.9493 32 1 2.2718 2.1231 1.9978 33 1 1.8588 3.0796 3.9926 34 1 0.4029 4.3944 5.7302 35 1 -2.8415 4.4307 5.3260 36 1 -2.7638 5.6891 4.0696 37 1 -1.7729 5.8380 5.5407 38 1 -2.3191 3.2136 1.2686 39 1 -3.2384 4.0949 2.5121 40 1 -2.9617 6.4879 -0.2532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177368892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:54 Heat of formation + Delta-G solvation = -84.458215 kcal Electronic energy + Delta-G solvation = -24237.445973 eV Core-core repulsion = 20632.057145 eV Total energy + Delta-G solvation = -3605.388828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39012 -39.85081 -38.42747 -36.03804 -34.89726 -32.92387 -32.19946 -31.93436 -30.70670 -27.49269 -26.99935 -26.17001 -23.15586 -22.29215 -21.61115 -20.17182 -19.08978 -18.77139 -18.05803 -17.39958 -16.54805 -16.28642 -15.75390 -15.24103 -15.12344 -14.94188 -14.30207 -14.19050 -13.82941 -13.14199 -13.08636 -12.78464 -12.71673 -12.61102 -12.47757 -12.27713 -11.76879 -11.58365 -11.37247 -11.35914 -11.16657 -10.87114 -10.75599 -10.51945 -10.22092 -10.06066 -9.52402 -8.94378 -8.85951 -8.44043 -8.40201 -8.10191 -7.59385 -6.03690 -4.11900 1.89739 2.32433 2.64757 2.81781 3.25231 3.29492 3.37220 3.40581 4.28836 4.36182 4.46316 4.53199 4.67194 4.91171 4.92022 5.03821 5.15441 5.27860 5.40464 5.59411 5.67718 5.77877 6.05576 6.34520 6.49361 6.54342 6.57658 6.77518 6.91971 7.12594 7.17396 7.27744 7.33474 7.49311 7.63005 7.73993 7.88370 7.96148 8.03609 8.29069 8.85852 8.92421 9.34797 9.56553 11.01789 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.004355 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.123431 B = 6427.756867 C = 6870.311744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.701 5.701 14 C 0.576 3.424 15 O -0.563 6.563 16 C -0.194 4.194 17 C -0.167 4.167 18 C -0.013 4.013 19 N -0.442 5.442 20 C 0.070 3.930 21 C 0.089 3.911 22 C -0.048 4.048 23 C 0.486 3.514 24 O -0.505 6.505 25 O -0.517 6.517 26 H 0.020 0.980 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.388 0.612 33 H 0.147 0.853 34 H 0.166 0.834 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.149 0.851 39 H 0.104 0.896 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.519 8.210 13.750 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.347 5.347 14 C 0.363 3.637 15 O -0.445 6.445 16 C -0.204 4.204 17 C -0.191 4.191 18 C -0.139 4.139 19 N -0.119 5.119 20 C -0.072 4.072 21 C -0.026 4.026 22 C -0.086 4.086 23 C 0.327 3.673 24 O -0.392 6.392 25 O -0.330 6.330 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.220 0.780 33 H 0.165 0.835 34 H 0.183 0.817 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.166 0.834 39 H 0.123 0.877 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -13.060 8.086 13.336 20.342 hybrid contribution 1.489 0.588 0.028 1.601 sum -11.571 8.673 13.364 19.690 Atomic orbital electron populations 1.21832 0.98389 0.97835 1.01311 1.21922 0.92655 0.99843 1.02128 1.18760 0.94071 0.89119 0.81158 0.93364 1.21300 0.90885 1.38499 1.06157 0.92084 1.24875 0.98461 0.94934 0.95429 1.69908 1.34905 1.37922 1.09376 0.86427 0.85126 0.77664 0.78079 1.19755 1.20944 1.20972 1.46264 1.14456 1.55648 1.18306 1.17265 0.82662 0.78178 0.85623 1.90665 1.51885 1.61720 1.40241 1.20564 0.94777 1.08860 0.96182 1.22065 0.99940 1.04411 0.92732 1.21613 0.85745 1.06631 0.99935 1.43342 1.13522 1.43920 1.11099 1.22031 0.89632 0.96943 0.98626 1.19199 0.96443 1.01640 0.85335 1.19823 0.95958 0.96437 0.96362 1.23173 0.79249 0.87013 0.77820 1.90747 1.31152 1.51706 1.65588 1.84501 1.51154 1.46507 1.50793 0.96068 0.94089 0.93194 0.88416 0.95114 0.92748 0.77977 0.83505 0.81686 0.90671 0.90421 0.89569 0.83359 0.87744 0.73267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 7.07 2.24 -69.08 -0.15 6.92 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.25 11.29 55.43 0.63 -24.62 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 N -0.70 -15.65 5.02 -56.06 -0.28 -15.93 16 14 C 0.58 12.46 6.38 -12.59 -0.08 12.38 16 15 O -0.56 -13.36 11.94 5.26 0.06 -13.29 16 16 C -0.19 -3.47 6.29 -103.35 -0.65 -4.12 16 17 C -0.17 -2.47 10.56 -37.50 -0.40 -2.86 16 18 C -0.01 -0.15 11.34 -16.82 -0.19 -0.34 16 19 N -0.44 -5.35 3.09 -119.88 -0.37 -5.72 16 20 C 0.07 0.51 10.61 59.85 0.63 1.14 16 21 C 0.09 1.35 5.38 -81.88 -0.44 0.91 16 22 C -0.05 -0.64 5.19 -29.04 -0.15 -0.79 16 23 C 0.49 7.12 8.32 36.01 0.30 7.42 16 24 O -0.51 -9.16 16.79 -18.75 -0.31 -9.47 16 25 O -0.52 -6.00 13.42 -39.24 -0.53 -6.52 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 28 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 29 H 0.10 2.68 5.95 -51.93 -0.31 2.38 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.39 7.77 7.66 -40.82 -0.31 7.46 16 33 H 0.15 1.93 7.69 -52.49 -0.40 1.52 16 34 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.54 7.49 -51.93 -0.39 0.15 16 37 H 0.09 0.47 8.13 -51.93 -0.42 0.05 16 38 H 0.15 2.25 6.47 -51.93 -0.34 1.92 16 39 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 40 H 0.41 3.05 9.10 45.56 0.41 3.47 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -35.48 336.37 -6.59 -42.07 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -4.48 Total: 10.82 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.35 Total: 1.51 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.03 Total: -46.27 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.78 Total: -29.29 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.48 -6.59 -42.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177368892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.389 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds