Wall clock time and date at job start Tue Mar 31 2020 06:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47355 * 2 1 4 4 H 1.09000 * 109.47002 * 304.99935 * 3 2 1 5 5 C 1.50693 * 109.47377 * 184.99296 * 3 2 1 6 6 H 1.07998 * 120.00518 * 239.99642 * 5 3 2 7 7 C 1.37878 * 119.99648 * 60.00265 * 5 3 2 8 8 N 1.31512 * 120.00187 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99949 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47154 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46929 * 120.00076 * 9 7 5 12 12 H 1.48507 * 109.47187 * 239.99779 * 9 7 5 13 13 N 1.46501 * 109.46657 * 64.99386 * 3 2 1 14 14 C 1.34776 * 120.00353 * 274.99869 * 13 3 2 15 15 O 1.21622 * 119.99887 * 0.02562 * 14 13 3 16 16 C 1.47265 * 119.99873 * 180.02562 * 14 13 3 17 17 C 1.46684 * 126.94476 * 359.97438 * 16 14 13 18 18 C 1.34490 * 106.33141 * 179.77602 * 17 16 14 19 19 N 1.36447 * 108.85736 * 0.36336 * 18 17 16 20 20 C 1.46499 * 124.85090 * 179.87977 * 19 18 17 21 21 C 1.34665 * 110.29733 * 359.62183 * 19 18 17 22 22 C 1.50692 * 125.80210 * 180.22538 * 21 19 18 23 23 C 1.50705 * 109.47277 * 90.02087 * 22 21 19 24 24 O 1.20823 * 119.99599 * 359.97438 * 23 22 21 25 25 O 1.34222 * 120.00072 * 180.02562 * 23 22 21 26 26 H 1.08995 * 109.47323 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47247 * 300.00267 * 1 2 3 28 28 H 1.09002 * 109.46639 * 60.00400 * 1 2 3 29 29 H 1.09002 * 109.47474 * 240.00037 * 2 1 3 30 30 H 1.09002 * 109.46639 * 119.99600 * 2 1 3 31 31 H 0.97001 * 120.00575 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99829 * 95.00510 * 13 3 2 33 33 H 1.07995 * 126.83314 * 0.02562 * 17 16 14 34 34 H 1.07996 * 125.57217 * 180.21391 * 18 17 16 35 35 H 1.09002 * 109.47391 * 269.70126 * 20 19 18 36 36 H 1.09001 * 109.46813 * 149.70182 * 20 19 18 37 37 H 1.09004 * 109.47041 * 29.70309 * 20 19 18 38 38 H 1.08993 * 109.47453 * 210.02559 * 22 21 19 39 39 H 1.09006 * 109.47352 * 330.02275 * 22 21 19 40 40 H 0.96700 * 117.00494 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4064 0.3366 -2.1727 9 14 6.0050 0.8812 -1.3815 10 1 6.5987 1.5473 -0.1944 11 1 6.4971 -0.5176 -1.4626 12 1 6.3992 1.6166 -2.6100 13 7 1.6523 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3418 2.6319 0.4316 16 6 0.0456 3.3232 2.6250 17 6 0.8560 3.4505 3.8411 18 6 0.1035 4.1259 4.7279 19 7 -1.1012 4.4136 4.1555 20 6 -2.1895 5.1393 4.8152 21 6 -1.1448 3.9399 2.8957 22 6 -2.3075 4.0677 1.9456 23 6 -2.1673 5.3389 1.1483 24 8 -1.2207 6.0665 1.3330 25 8 -3.0947 5.6631 0.2337 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8295 -0.0619 -2.9493 32 1 2.2718 2.1231 1.9978 33 1 1.8588 3.0796 3.9926 34 1 0.4029 4.3944 5.7302 35 1 -2.8415 4.4307 5.3260 36 1 -2.7638 5.6891 4.0696 37 1 -1.7729 5.8380 5.5407 38 1 -2.3191 3.2136 1.2686 39 1 -3.2384 4.0949 2.5121 40 1 -2.9617 6.4879 -0.2532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177368892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:54 Heat of formation + Delta-G solvation = -110.079651 kcal Electronic energy + Delta-G solvation = -24238.557002 eV Core-core repulsion = 20632.057145 eV Total energy + Delta-G solvation = -3606.499857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.45473 -40.97124 -40.12554 -37.13581 -36.82061 -34.35074 -33.71689 -33.11168 -32.52109 -29.18295 -28.19081 -27.31908 -25.03634 -23.66491 -22.79895 -21.74566 -20.80058 -20.06194 -19.18124 -18.74314 -17.98409 -17.50596 -17.11398 -16.96477 -16.45554 -16.16856 -15.94324 -15.74996 -15.03332 -14.57861 -14.43742 -14.15394 -13.99982 -13.78808 -13.60841 -13.43608 -13.20021 -13.13787 -12.93006 -12.85429 -12.68055 -12.64178 -12.48437 -12.12550 -12.01185 -11.71830 -11.54864 -11.01112 -10.62494 -10.46645 -9.65235 -9.38315 -9.12988 -8.14282 -6.31161 0.69572 1.18719 1.43808 1.44677 1.56670 1.57550 1.91264 2.24435 2.39972 2.81368 2.92461 3.15183 3.47967 3.93328 4.00997 4.16541 4.37680 4.42488 4.47360 4.53006 4.56179 4.62450 4.68514 4.71697 4.80992 5.04524 5.10005 5.20199 5.31578 5.49358 5.56905 5.60133 5.70415 5.78970 5.85154 5.97848 6.11667 6.21113 6.40312 6.77136 6.95268 7.14161 7.36076 7.71004 8.91443 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.004355 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.123431 B = 6427.756867 C = 6870.311744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.284 1.284 13 N -0.703 5.703 14 C 0.570 3.430 15 O -0.595 6.595 16 C -0.243 4.243 17 C -0.192 4.192 18 C 0.008 3.992 19 N -0.434 5.434 20 C 0.058 3.942 21 C 0.090 3.910 22 C -0.049 4.049 23 C 0.490 3.510 24 O -0.547 6.547 25 O -0.509 6.509 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.398 0.602 33 H 0.154 0.846 34 H 0.211 0.789 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.152 0.848 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 9.060 16.558 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.201 1.201 12 H -0.210 1.210 13 N -0.350 5.350 14 C 0.360 3.640 15 O -0.479 6.479 16 C -0.254 4.254 17 C -0.216 4.216 18 C -0.119 4.119 19 N -0.109 5.109 20 C -0.082 4.082 21 C -0.027 4.027 22 C -0.087 4.087 23 C 0.333 3.667 24 O -0.437 6.437 25 O -0.323 6.323 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.232 0.768 33 H 0.171 0.829 34 H 0.228 0.772 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.169 0.831 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -13.630 8.961 16.180 22.975 hybrid contribution 1.518 0.412 -0.826 1.777 sum -12.112 9.373 15.354 21.686 Atomic orbital electron populations 1.21650 0.96778 0.99052 1.00330 1.21760 0.94017 0.98932 1.01081 1.18347 0.93531 0.89223 0.81233 0.98705 1.21611 0.91561 1.38776 1.06678 0.91524 1.25759 1.03345 0.94352 0.94932 1.70055 1.36936 1.38434 1.09865 0.85326 0.79129 0.77929 0.78114 1.18687 1.20109 1.20980 1.46050 1.15409 1.56199 1.17345 1.17876 0.81759 0.77507 0.86850 1.90628 1.52575 1.62834 1.41860 1.20394 0.97395 1.11844 0.95762 1.22259 1.00770 1.06189 0.92369 1.22255 0.84801 1.04011 1.00869 1.43694 1.14629 1.42601 1.09974 1.22462 0.88805 0.97802 0.99084 1.19339 0.95882 1.00703 0.86813 1.19886 0.97652 0.94892 0.96257 1.23393 0.78727 0.86842 0.77731 1.90728 1.32751 1.53205 1.67003 1.84463 1.50004 1.47674 1.50133 0.93558 0.93767 0.95428 0.90974 0.94327 0.92602 0.76767 0.82884 0.77205 0.87953 0.90050 0.87079 0.85471 0.83072 0.71183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -6.17 5.45 30.59 0.17 -6.00 16 3 C 0.28 15.37 2.24 44.24 0.10 15.47 16 4 H 0.00 -0.32 7.58 -2.39 -0.02 -0.34 16 5 C -0.55 -30.74 8.73 25.60 0.22 -30.52 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.90 5.29 84.66 0.45 1.34 16 8 N -0.91 -53.96 11.29 21.45 0.24 -53.72 16 9 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.70 -32.77 5.02 -449.53 -2.26 -35.03 16 14 C 0.57 25.76 6.38 86.62 0.55 26.32 16 15 O -0.59 -29.82 11.94 -4.10 -0.05 -29.87 16 16 C -0.24 -8.79 6.29 -19.04 -0.12 -8.91 16 17 C -0.19 -5.47 10.56 23.62 0.25 -5.22 16 18 C 0.01 0.17 11.34 83.12 0.94 1.11 16 19 N -0.43 -9.13 3.09 -533.19 -1.65 -10.78 16 20 C 0.06 0.59 10.61 127.77 1.36 1.94 16 21 C 0.09 2.65 5.38 41.78 0.22 2.87 16 22 C -0.05 -1.27 5.19 29.10 0.15 -1.12 16 23 C 0.49 14.07 8.32 71.24 0.59 14.66 16 24 O -0.55 -19.83 16.79 21.97 0.37 -19.46 16 25 O -0.51 -11.28 13.42 -51.34 -0.69 -11.96 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.04 2.03 5.64 -2.39 -0.01 2.01 16 28 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 29 H 0.07 4.13 5.95 -2.39 -0.01 4.12 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.40 16.51 7.66 -92.71 -0.71 15.80 16 33 H 0.15 3.92 7.69 -2.91 -0.02 3.90 16 34 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.81 7.49 -2.39 -0.02 0.79 16 37 H 0.11 0.63 8.13 -2.38 -0.02 0.61 16 38 H 0.13 3.94 6.47 -2.39 -0.02 3.92 16 39 H 0.15 2.31 7.58 -2.38 -0.02 2.29 16 40 H 0.43 5.94 9.10 -74.06 -0.67 5.26 16 Total: -1.00 -81.52 336.37 3.20 -78.32 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.30 Total: 29.85 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.50 Total: 6.88 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -3.66 Total: -99.52 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: -0.37 Total: -61.29 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -81.52 3.20 -78.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177368892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.763 kcal (2) G-P(sol) polarization free energy of solvation -81.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds