Wall clock time and date at job start Tue Mar 31 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47139 * 2 1 4 4 C 1.53002 * 109.47205 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46909 * 180.02562 * 4 3 2 6 6 C 1.36832 * 119.99839 * 262.45703 * 5 4 3 7 7 H 1.08001 * 119.99630 * 137.98294 * 6 5 4 8 8 C 1.39067 * 120.00075 * 317.98634 * 6 5 4 9 9 N 1.31349 * 120.00304 * 343.13517 * 8 6 5 10 10 Si 1.86803 * 119.99966 * 163.13844 * 8 6 5 11 11 H 1.48498 * 109.47395 * 59.99859 * 10 8 6 12 12 H 1.48498 * 109.47188 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46918 * 299.99688 * 10 8 6 14 14 C 1.34774 * 119.99925 * 82.46777 * 5 4 3 15 15 O 1.21599 * 120.00176 * 354.81787 * 14 5 4 16 16 C 1.47683 * 119.99695 * 175.10534 * 14 5 4 17 17 N 1.33064 * 119.76850 * 353.82110 * 16 14 5 18 18 C 1.31441 * 121.80694 * 179.75134 * 17 16 14 19 19 C 1.38585 * 121.11967 * 0.53419 * 18 17 16 20 20 C 1.38841 * 119.39489 * 359.73608 * 19 18 17 21 21 O 1.35826 * 120.82017 * 180.02562 * 20 19 18 22 22 C 1.42906 * 117.00220 * 359.97438 * 21 20 19 23 23 C 1.39694 * 119.76632 * 174.10064 * 16 14 5 24 24 O 1.35737 * 120.57106 * 359.97438 * 23 16 14 25 25 H 1.09000 * 109.47176 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46762 * 299.99721 * 1 2 3 27 27 H 1.08998 * 109.47803 * 59.99336 * 1 2 3 28 28 H 1.09003 * 109.46762 * 240.00279 * 2 1 3 29 29 H 1.09001 * 109.47127 * 120.00369 * 2 1 3 30 30 H 1.09003 * 109.47066 * 60.00466 * 3 2 1 31 31 H 1.09005 * 109.46780 * 300.00549 * 3 2 1 32 32 H 1.08996 * 109.47084 * 59.99712 * 4 3 2 33 33 H 1.09001 * 109.46780 * 300.00197 * 4 3 2 34 34 H 0.96998 * 120.00476 * 179.97438 * 9 8 6 35 35 H 1.08003 * 119.44319 * 180.29634 * 18 17 16 36 36 H 1.07997 * 120.29869 * 179.71640 * 19 18 17 37 37 H 1.09003 * 109.46669 * 299.99565 * 22 21 20 38 38 H 1.08992 * 109.46997 * 59.99620 * 22 21 20 39 39 H 1.09000 * 109.46768 * 179.97438 * 22 21 20 40 40 H 0.96698 * 113.99684 * 90.00057 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4325 3.4176 -1.1746 7 1 4.1526 4.4413 -1.3752 8 6 5.1730 2.7031 -2.1100 9 7 5.7930 1.6012 -1.7540 10 14 5.2860 3.3103 -3.8730 11 1 5.8951 4.6646 -3.8920 12 1 6.1274 2.3775 -4.6649 13 1 3.9249 3.3713 -4.4637 14 6 4.1391 3.5094 1.1575 15 8 3.7194 3.0164 2.1867 16 6 4.7317 4.8620 1.1746 17 7 5.2954 5.3503 0.0726 18 6 5.8303 6.5506 0.0415 19 6 5.8396 7.3599 1.1665 20 6 5.2691 6.8962 2.3443 21 8 5.2617 7.6653 3.4638 22 6 5.8637 8.9578 3.3671 23 6 4.7018 5.6174 2.3492 24 8 4.1319 5.1194 3.4760 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 6.3092 1.1026 -2.4065 35 1 6.2735 6.9107 -0.8752 36 1 6.2868 8.3421 1.1273 37 1 6.9131 8.8501 3.0927 38 1 5.3474 9.5430 2.6062 39 1 5.7895 9.4660 4.3285 40 1 4.7441 4.6312 4.0435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193528851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:17 Heat of formation + Delta-G solvation = -67.017027 kcal Electronic energy + Delta-G solvation = -24308.884424 eV Core-core repulsion = 20704.251903 eV Total energy + Delta-G solvation = -3604.632521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44016 -38.68959 -37.43046 -36.59349 -35.10334 -33.90720 -31.48984 -30.91643 -29.83192 -28.30412 -27.46287 -24.87541 -23.97615 -22.71502 -22.13229 -20.45110 -19.47776 -18.39356 -17.71410 -16.98153 -16.63012 -15.84002 -15.36122 -14.85522 -14.70479 -14.61622 -14.22490 -14.10901 -13.86240 -13.63909 -13.26665 -12.96038 -12.49726 -12.35475 -12.17233 -11.90014 -11.53790 -11.40507 -11.35647 -11.13530 -10.94278 -10.62108 -10.56893 -10.46943 -10.29432 -10.18385 -9.69839 -9.05832 -8.85493 -8.66299 -8.27414 -8.18503 -7.33939 -6.30811 -3.88664 1.19834 1.70681 3.18949 3.19807 3.25689 3.28341 3.72667 4.15865 4.42753 4.60410 4.76565 4.92244 4.97808 5.07215 5.18682 5.24424 5.32504 5.39735 5.53105 5.56047 5.70443 5.86148 6.06947 6.11358 6.15972 6.28323 6.29332 6.42609 6.45715 6.57641 6.74316 6.88098 6.90244 7.14700 7.29900 7.39618 7.62142 7.99045 8.19241 8.49263 8.61602 9.15975 9.51413 9.95442 10.72452 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.005937 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.919928 B = 4715.219269 C = 6358.411858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.131 4.131 4 C 0.122 3.878 5 N -0.406 5.406 6 C -0.287 4.287 7 H 0.107 0.893 8 C 0.041 3.959 9 N -0.863 5.863 10 Si 0.917 3.083 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.498 3.502 15 O -0.590 6.590 16 C 0.122 3.878 17 N -0.413 5.413 18 C 0.110 3.890 19 C -0.255 4.255 20 C 0.120 3.880 21 O -0.306 6.306 22 C 0.026 3.974 23 C 0.064 3.936 24 O -0.460 6.460 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.269 0.731 35 H 0.156 0.844 36 H 0.133 0.867 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 8.090 3.080 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.169 4.169 4 C -0.001 4.001 5 N -0.121 5.121 6 C -0.417 4.417 7 H 0.124 0.876 8 C -0.165 4.165 9 N -0.500 5.500 10 Si 0.743 3.257 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.287 3.713 15 O -0.475 6.475 16 C -0.016 4.016 17 N -0.128 5.128 18 C -0.051 4.051 19 C -0.277 4.277 20 C 0.067 3.933 21 O -0.218 6.218 22 C -0.069 4.069 23 C 0.014 3.986 24 O -0.267 6.267 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.173 0.827 36 H 0.151 0.849 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.583 7.330 2.770 7.857 hybrid contribution 0.960 1.002 -0.201 1.402 sum 0.377 8.331 2.568 8.726 Atomic orbital electron populations 1.21756 0.96637 1.00636 1.01536 1.21420 0.95000 0.97655 1.01569 1.21929 0.97570 0.95673 1.01760 1.21391 0.91238 0.84330 1.03110 1.43475 1.51634 1.11537 1.05435 1.19788 1.30670 0.99143 0.92068 0.87575 1.25439 0.94436 0.96203 1.00387 1.69907 1.28393 1.16845 1.34894 0.86160 0.78300 0.78847 0.82344 1.19545 1.21193 1.19966 1.17829 0.84398 0.84955 0.84085 1.90649 1.54020 1.70146 1.32713 1.21953 0.95935 0.95550 0.88180 1.68903 1.06856 1.11420 1.25580 1.22903 0.94856 0.90212 0.97105 1.22232 1.08294 1.03282 0.93867 1.19753 0.95388 0.91623 0.86576 1.86116 1.75588 1.27772 1.32319 1.23061 0.97555 0.82675 1.03593 1.18847 1.00103 0.90047 0.89614 1.84791 1.37514 1.72956 1.31483 0.93453 0.93011 0.93063 0.92302 0.92358 0.92239 0.92346 0.88249 0.92868 0.92109 0.82708 0.84914 0.92676 0.92652 0.88331 0.76031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.70 5.45 -26.73 -0.15 -2.85 16 4 C 0.12 2.93 4.78 -4.04 -0.02 2.91 16 5 N -0.41 -10.46 2.50 -115.95 -0.29 -10.75 16 6 C -0.29 -7.37 7.32 -15.01 -0.11 -7.48 16 7 H 0.11 2.71 6.31 -52.49 -0.33 2.38 16 8 C 0.04 1.03 4.96 -17.45 -0.09 0.94 16 9 N -0.86 -22.77 11.63 55.50 0.65 -22.13 16 10 Si 0.92 19.64 29.59 -169.99 -5.03 14.61 16 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 C 0.50 12.90 7.53 -12.40 -0.09 12.81 16 15 O -0.59 -15.86 14.58 -16.64 -0.24 -16.11 16 16 C 0.12 2.82 6.63 -82.93 -0.55 2.27 16 17 N -0.41 -9.04 6.52 -9.79 -0.06 -9.10 16 18 C 0.11 1.89 11.17 -17.59 -0.20 1.69 16 19 C -0.25 -3.86 9.11 -39.23 -0.36 -4.22 16 20 C 0.12 2.08 6.75 -38.74 -0.26 1.82 16 21 O -0.31 -4.68 10.35 -31.82 -0.33 -5.01 16 22 C 0.03 0.26 9.84 101.05 0.99 1.25 16 23 C 0.06 1.33 6.76 -38.42 -0.26 1.07 16 24 O -0.46 -9.44 11.43 -46.97 -0.54 -9.98 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.31 7.82 -51.93 -0.41 0.91 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.10 2.47 5.83 -51.93 -0.30 2.17 16 33 H 0.05 1.31 7.74 -51.93 -0.40 0.91 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.16 2.18 8.06 -52.48 -0.42 1.75 16 36 H 0.13 1.49 6.44 -52.49 -0.34 1.16 16 37 H 0.05 0.47 7.71 -51.93 -0.40 0.07 16 38 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.38 6.48 9.06 45.56 0.41 6.89 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -31.50 336.01 -6.34 -37.84 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.68 Total: 9.28 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.88 Total: 6.28 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.29 Total: -41.98 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.11 Total: -31.09 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.50 -6.34 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193528851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.178 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds