Wall clock time and date at job start Tue Mar 31 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47139 * 2 1 4 4 C 1.53002 * 109.47205 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46909 * 180.02562 * 4 3 2 6 6 C 1.36832 * 119.99839 * 262.45703 * 5 4 3 7 7 H 1.08001 * 119.99630 * 137.98294 * 6 5 4 8 8 C 1.39067 * 120.00075 * 317.98634 * 6 5 4 9 9 N 1.31349 * 120.00304 * 343.13517 * 8 6 5 10 10 Si 1.86803 * 119.99966 * 163.13844 * 8 6 5 11 11 H 1.48498 * 109.47395 * 59.99859 * 10 8 6 12 12 H 1.48498 * 109.47188 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46918 * 299.99688 * 10 8 6 14 14 C 1.34774 * 119.99925 * 82.46777 * 5 4 3 15 15 O 1.21599 * 120.00176 * 354.81787 * 14 5 4 16 16 C 1.47683 * 119.99695 * 175.10534 * 14 5 4 17 17 N 1.33064 * 119.76850 * 353.82110 * 16 14 5 18 18 C 1.31441 * 121.80694 * 179.75134 * 17 16 14 19 19 C 1.38585 * 121.11967 * 0.53419 * 18 17 16 20 20 C 1.38841 * 119.39489 * 359.73608 * 19 18 17 21 21 O 1.35826 * 120.82017 * 180.02562 * 20 19 18 22 22 C 1.42906 * 117.00220 * 359.97438 * 21 20 19 23 23 C 1.39694 * 119.76632 * 174.10064 * 16 14 5 24 24 O 1.35737 * 120.57106 * 359.97438 * 23 16 14 25 25 H 1.09000 * 109.47176 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46762 * 299.99721 * 1 2 3 27 27 H 1.08998 * 109.47803 * 59.99336 * 1 2 3 28 28 H 1.09003 * 109.46762 * 240.00279 * 2 1 3 29 29 H 1.09001 * 109.47127 * 120.00369 * 2 1 3 30 30 H 1.09003 * 109.47066 * 60.00466 * 3 2 1 31 31 H 1.09005 * 109.46780 * 300.00549 * 3 2 1 32 32 H 1.08996 * 109.47084 * 59.99712 * 4 3 2 33 33 H 1.09001 * 109.46780 * 300.00197 * 4 3 2 34 34 H 0.96998 * 120.00476 * 179.97438 * 9 8 6 35 35 H 1.08003 * 119.44319 * 180.29634 * 18 17 16 36 36 H 1.07997 * 120.29869 * 179.71640 * 19 18 17 37 37 H 1.09003 * 109.46669 * 299.99565 * 22 21 20 38 38 H 1.08992 * 109.46997 * 59.99620 * 22 21 20 39 39 H 1.09000 * 109.46768 * 179.97438 * 22 21 20 40 40 H 0.96698 * 113.99684 * 90.00057 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4325 3.4176 -1.1746 7 1 4.1526 4.4413 -1.3752 8 6 5.1730 2.7031 -2.1100 9 7 5.7930 1.6012 -1.7540 10 14 5.2860 3.3103 -3.8730 11 1 5.8951 4.6646 -3.8920 12 1 6.1274 2.3775 -4.6649 13 1 3.9249 3.3713 -4.4637 14 6 4.1391 3.5094 1.1575 15 8 3.7194 3.0164 2.1867 16 6 4.7317 4.8620 1.1746 17 7 5.2954 5.3503 0.0726 18 6 5.8303 6.5506 0.0415 19 6 5.8396 7.3599 1.1665 20 6 5.2691 6.8962 2.3443 21 8 5.2617 7.6653 3.4638 22 6 5.8637 8.9578 3.3671 23 6 4.7018 5.6174 2.3492 24 8 4.1319 5.1194 3.4760 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 6.3092 1.1026 -2.4065 35 1 6.2735 6.9107 -0.8752 36 1 6.2868 8.3421 1.1273 37 1 6.9131 8.8501 3.0927 38 1 5.3474 9.5430 2.6062 39 1 5.7895 9.4660 4.3285 40 1 4.7441 4.6312 4.0435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193528851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:17 Heat of formation + Delta-G solvation = -87.596646 kcal Electronic energy + Delta-G solvation = -24309.776823 eV Core-core repulsion = 20704.251903 eV Total energy + Delta-G solvation = -3605.524920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89447 -40.32477 -38.89949 -38.15576 -36.92253 -35.54742 -33.36633 -32.34956 -31.28406 -29.87729 -28.45621 -26.76973 -25.51311 -24.13177 -23.66620 -21.99455 -21.23819 -19.99473 -19.23575 -18.43990 -18.22392 -17.11014 -17.02387 -16.49149 -16.23348 -16.11102 -15.83943 -15.61686 -15.48979 -14.98830 -14.79304 -14.44056 -13.91993 -13.86524 -13.71801 -13.48198 -13.06377 -12.94239 -12.69409 -12.50377 -12.44091 -12.13897 -12.12929 -12.00459 -11.93818 -11.76242 -11.41578 -10.88387 -10.70641 -10.05729 -9.95005 -9.68152 -9.24574 -8.19861 -5.86293 -0.30595 0.30543 1.50420 1.53152 1.61459 2.01974 2.05939 2.40957 2.87196 2.91866 3.13089 3.27612 3.71872 3.78989 3.95494 4.08853 4.15972 4.30742 4.36073 4.40163 4.42089 4.51340 4.61093 4.69441 4.76973 4.85256 4.87637 4.94170 5.00723 5.06280 5.17351 5.36489 5.41487 5.48457 5.54512 5.69733 6.07329 6.14531 6.58950 6.75140 7.05575 7.26424 7.59230 8.02449 8.84634 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.005937 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.919928 B = 4715.219269 C = 6358.411858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.117 4.117 4 C 0.126 3.874 5 N -0.421 5.421 6 C -0.299 4.299 7 H 0.105 0.895 8 C 0.001 3.999 9 N -0.901 5.901 10 Si 0.980 3.020 11 H -0.258 1.258 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.484 3.516 15 O -0.616 6.616 16 C 0.086 3.914 17 N -0.446 5.446 18 C 0.105 3.895 19 C -0.222 4.222 20 C 0.126 3.874 21 O -0.322 6.322 22 C 0.012 3.988 23 C 0.048 3.952 24 O -0.476 6.476 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.031 0.969 34 H 0.269 0.731 35 H 0.191 0.809 36 H 0.185 0.815 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 10.900 2.284 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.155 4.155 4 C 0.003 3.997 5 N -0.136 5.136 6 C -0.428 4.428 7 H 0.122 0.878 8 C -0.200 4.200 9 N -0.539 5.539 10 Si 0.804 3.196 11 H -0.183 1.183 12 H -0.212 1.212 13 H -0.195 1.195 14 C 0.273 3.727 15 O -0.504 6.504 16 C -0.050 4.050 17 N -0.162 5.162 18 C -0.056 4.056 19 C -0.243 4.243 20 C 0.073 3.927 21 O -0.234 6.234 22 C -0.081 4.081 23 C -0.002 4.002 24 O -0.286 6.286 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.208 0.792 36 H 0.202 0.798 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.058 10.165 1.984 10.357 hybrid contribution 0.886 0.356 0.232 0.982 sum 0.827 10.521 2.216 10.783 Atomic orbital electron populations 1.21712 0.94195 1.02389 1.01704 1.21402 0.97088 0.94838 1.01882 1.21791 0.95216 0.98117 1.00422 1.21341 0.93227 0.83868 1.01277 1.43699 1.52169 1.11926 1.05774 1.19894 1.31373 0.99314 0.92194 0.87792 1.26211 0.93731 0.96225 1.03869 1.70023 1.29598 1.18253 1.36053 0.85183 0.78331 0.78689 0.77379 1.18259 1.21206 1.19506 1.18453 0.83974 0.86470 0.83772 1.90586 1.54987 1.71329 1.33466 1.21573 0.98425 0.95080 0.89969 1.68692 1.07947 1.13894 1.25638 1.23521 0.94001 0.88785 0.99253 1.22671 1.05399 1.04514 0.91745 1.19675 0.94432 0.90580 0.88059 1.86118 1.75964 1.29826 1.31442 1.23525 0.98473 0.80222 1.05919 1.18996 1.00829 0.91596 0.88795 1.84729 1.38674 1.73386 1.31761 0.90889 0.93212 0.92561 0.91666 0.92385 0.94258 0.92707 0.89401 0.95032 0.92156 0.79180 0.79760 0.90779 0.90974 0.85892 0.74882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.26 16 2 C -0.11 -3.92 5.93 30.59 0.18 -3.73 16 3 C -0.12 -5.06 5.45 30.60 0.17 -4.89 16 4 C 0.13 6.39 4.78 86.38 0.41 6.81 16 5 N -0.42 -22.83 2.50 -639.02 -1.60 -24.43 16 6 C -0.30 -15.79 7.32 84.11 0.62 -15.18 16 7 H 0.10 5.44 6.31 -2.91 -0.02 5.42 16 8 C 0.00 0.07 4.96 84.96 0.42 0.49 16 9 N -0.90 -49.07 11.63 21.68 0.25 -48.82 16 10 Si 0.98 40.24 29.59 68.60 2.03 42.27 16 11 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 12 H -0.29 -11.64 7.11 99.48 0.71 -10.94 16 13 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 14 C 0.48 26.41 7.53 86.74 0.65 27.06 16 15 O -0.62 -35.22 14.58 16.93 0.25 -34.97 16 16 C 0.09 4.10 6.63 41.81 0.28 4.38 16 17 N -0.45 -19.48 6.52 -184.88 -1.21 -20.69 16 18 C 0.10 3.32 11.17 84.83 0.95 4.27 16 19 C -0.22 -5.83 9.11 22.50 0.20 -5.62 16 20 C 0.13 4.11 6.75 22.82 0.15 4.26 16 21 O -0.32 -8.88 10.35 -79.53 -0.82 -9.70 16 22 C 0.01 0.18 9.84 113.37 1.12 1.30 16 23 C 0.05 2.01 6.76 23.02 0.16 2.17 16 24 O -0.48 -20.17 11.43 -63.78 -0.73 -20.90 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.83 7.82 -2.39 -0.02 1.81 16 31 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.09 4.63 5.83 -2.39 -0.01 4.62 16 33 H 0.03 1.68 7.74 -2.39 -0.02 1.66 16 34 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 35 H 0.19 4.54 8.06 -2.91 -0.02 4.52 16 36 H 0.19 2.91 6.44 -2.91 -0.02 2.89 16 37 H 0.07 0.86 7.71 -2.39 -0.02 0.84 16 38 H 0.07 0.87 7.70 -2.39 -0.02 0.85 16 39 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.39 13.99 9.06 -74.06 -0.67 13.32 16 Total: -1.00 -72.91 336.01 4.59 -68.32 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.40 Total: 30.87 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 6.02 Total: 18.04 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -2.55 Total: -93.93 kcal Atomic # 8 Polarization: -64.27 SS G_CDS: -1.31 Total: -65.58 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -72.91 4.59 -68.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193528851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.273 kcal (2) G-P(sol) polarization free energy of solvation -72.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds