Wall clock time and date at job start Tue Mar 31 2020 06:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99902 * 2 1 4 4 H 1.08997 * 109.47081 * 236.96064 * 3 2 1 5 5 O 1.42895 * 109.46988 * 356.96149 * 3 2 1 6 6 C 1.42898 * 113.99774 * 209.44217 * 5 3 2 7 7 H 1.08998 * 109.47069 * 327.91440 * 6 5 3 8 8 C 1.50692 * 109.47388 * 87.92026 * 6 5 3 9 9 H 1.08012 * 119.99982 * 234.24945 * 8 6 5 10 10 C 1.37873 * 120.00585 * 54.24356 * 8 6 5 11 11 N 1.31514 * 119.99510 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00449 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46759 * 60.00190 * 12 10 8 14 14 H 1.48504 * 109.47136 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47414 * 300.00462 * 12 10 8 16 16 C 1.50706 * 109.46775 * 207.91880 * 6 5 3 17 17 C 1.38234 * 120.00106 * 324.72163 * 16 6 5 18 18 C 1.38235 * 120.00139 * 179.81463 * 17 16 6 19 19 C 1.38234 * 119.99694 * 0.39448 * 18 17 16 20 20 C 1.38241 * 120.00205 * 359.86221 * 19 18 17 21 21 C 1.38231 * 119.99793 * 145.00188 * 16 6 5 22 22 C 1.50695 * 109.47016 * 116.96456 * 3 2 1 23 23 C 1.38243 * 119.99449 * 279.72381 * 22 3 2 24 24 C 1.38240 * 119.99671 * 179.78711 * 23 22 3 25 25 C 1.38239 * 119.99869 * 0.44551 * 24 23 22 26 26 C 1.38236 * 119.99880 * 359.81101 * 25 24 23 27 27 C 1.38227 * 120.00555 * 99.99997 * 22 3 2 28 28 H 1.07997 * 120.00123 * 353.99537 * 1 2 3 29 29 H 1.08004 * 119.99814 * 173.73068 * 1 2 3 30 30 H 1.08005 * 119.99934 * 180.02562 * 2 1 3 31 31 H 0.97007 * 119.99583 * 179.97438 * 11 10 8 32 32 H 1.07998 * 120.00007 * 0.02562 * 17 16 6 33 33 H 1.07993 * 120.00191 * 180.23430 * 18 17 16 34 34 H 1.08004 * 120.00200 * 179.83754 * 19 18 17 35 35 H 1.08005 * 119.99614 * 179.97438 * 20 19 18 36 36 H 1.07999 * 120.00586 * 359.97438 * 21 16 6 37 37 H 1.07998 * 120.00413 * 0.02562 * 23 22 3 38 38 H 1.07995 * 120.00199 * 180.27380 * 24 23 22 39 39 H 1.08003 * 119.99625 * 179.83027 * 25 24 23 40 40 H 1.08005 * 119.99586 * 179.97438 * 26 25 24 41 41 H 1.08007 * 120.00038 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.7304 1.3396 -0.8615 5 8 1.1365 2.3903 -0.0714 6 6 1.6526 3.5537 -0.7212 7 1 2.7240 3.6283 -0.5355 8 6 1.4055 3.4520 -2.2042 9 1 2.2279 3.5544 -2.8970 10 6 0.1298 3.2283 -2.6770 11 7 -0.8715 3.1041 -1.8335 12 14 -0.1765 3.1031 -4.5154 13 1 0.6154 1.9776 -5.0735 14 1 -1.6211 2.8623 -4.7613 15 1 0.2326 4.3701 -5.1729 16 6 0.9624 4.7791 -0.1797 17 6 -0.3723 4.7206 0.1752 18 6 -1.0044 5.8436 0.6754 19 6 -0.3038 7.0273 0.8130 20 6 1.0295 7.0873 0.4531 21 6 1.6625 5.9632 -0.0435 22 6 2.8726 1.4180 1.2663 23 6 2.2639 1.8153 2.4422 24 6 3.0051 1.9146 3.6049 25 6 4.3568 1.6256 3.5896 26 6 4.9665 1.2335 2.4125 27 6 4.2244 1.1299 1.2509 28 1 -0.5400 0.9301 0.0978 29 1 -0.5400 -0.9298 -0.1021 30 1 1.8500 -0.9354 -0.0004 31 1 -1.7692 2.9470 -2.1661 32 1 -0.9204 3.7966 0.0649 33 1 -2.0461 5.7969 0.9563 34 1 -0.7983 7.9055 1.2014 35 1 1.5767 8.0123 0.5602 36 1 2.7042 6.0101 -0.3247 37 1 1.2085 2.0443 2.4535 38 1 2.5287 2.2207 4.5245 39 1 4.9365 1.7059 4.4973 40 1 6.0227 1.0081 2.4005 41 1 4.7008 0.8235 0.3313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223310012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:58 Heat of formation + Delta-G solvation = 34.208012 kcal Electronic energy + Delta-G solvation = -23589.923584 eV Core-core repulsion = 20400.529773 eV Total energy + Delta-G solvation = -3189.393811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.12801 -38.15460 -36.55839 -33.63521 -32.01172 -30.64184 -30.43781 -30.21640 -29.61956 -26.69360 -25.21769 -22.91264 -22.11903 -21.39694 -21.05333 -20.09475 -18.81326 -16.91353 -16.24307 -16.01825 -15.28942 -14.97980 -14.87393 -14.38632 -14.05610 -13.83204 -13.45045 -13.27545 -12.96852 -12.91034 -12.48378 -12.29628 -12.15812 -11.81328 -11.53279 -11.16274 -10.96855 -10.88563 -10.86833 -10.55452 -10.49275 -10.20940 -10.03412 -9.82795 -9.19054 -8.69372 -8.67872 -8.53748 -8.25090 -8.12681 -7.76947 -7.42251 -5.99380 -4.23673 1.73387 1.79868 2.47350 2.60596 3.08534 3.27079 3.31484 3.34803 4.18921 4.35198 4.81819 5.04633 5.24412 5.24988 5.31362 5.36955 5.54781 5.77884 5.81281 5.92632 5.93604 5.96032 6.01678 6.14486 6.29521 6.35360 6.41360 6.48143 6.61170 6.68447 6.81177 6.84411 6.88739 6.98484 7.11034 7.13887 7.28220 7.36691 7.46866 7.50564 7.63141 7.67009 7.85568 8.03939 8.10545 8.28687 8.56056 8.97570 9.50441 10.92397 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.007003 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.499781 B = 3997.365026 C = 5309.107471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.166 4.166 3 C 0.162 3.838 4 H 0.070 0.930 5 O -0.343 6.343 6 C 0.248 3.752 7 H 0.015 0.985 8 C -0.550 4.550 9 H 0.057 0.943 10 C 0.091 3.909 11 N -0.843 5.843 12 Si 0.887 3.113 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.278 1.278 16 C -0.033 4.033 17 C -0.061 4.061 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.145 4.145 21 C -0.132 4.132 22 C -0.089 4.089 23 C -0.087 4.087 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.128 4.128 27 C -0.119 4.119 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.261 0.739 32 H 0.164 0.836 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -2.435 7.517 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.103 3.897 4 H 0.088 0.912 5 O -0.262 6.262 6 C 0.192 3.808 7 H 0.033 0.967 8 C -0.587 4.587 9 H 0.076 0.924 10 C -0.116 4.116 11 N -0.477 5.477 12 Si 0.715 3.285 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.203 1.203 16 C -0.034 4.034 17 C -0.079 4.079 18 C -0.167 4.167 19 C -0.168 4.168 20 C -0.163 4.163 21 C -0.150 4.150 22 C -0.089 4.089 23 C -0.105 4.105 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.137 4.137 28 H 0.144 0.856 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.333 -2.475 7.591 9.084 hybrid contribution 0.099 0.163 -1.322 1.336 sum 4.432 -2.313 6.269 8.018 Atomic orbital electron populations 1.23889 0.96284 1.01992 0.97188 1.22647 0.96338 0.95896 1.03543 1.19466 0.90473 0.87855 0.91898 0.91239 1.88029 1.37348 1.22072 1.78747 1.18523 0.90342 0.81022 0.90887 0.96711 1.21378 0.94201 1.51887 0.91209 0.92444 1.24871 0.95940 0.93506 0.97292 1.69773 0.99772 1.45042 1.33139 0.86754 0.77240 0.78591 0.85950 1.20228 1.21103 1.20346 1.20072 0.94865 0.95043 0.93402 1.21877 0.94316 0.99762 0.91941 1.21163 0.98989 0.94134 1.02458 1.20812 0.94858 0.97451 1.03640 1.20725 0.95092 0.97534 1.02942 1.20808 0.99162 0.93451 1.01588 1.20775 0.93892 0.97334 0.96903 1.21054 1.00593 0.97218 0.91652 1.21131 0.94296 1.00905 0.98195 1.21023 0.95063 1.01208 0.97742 1.21006 0.99291 1.01258 0.93098 1.21048 0.93786 1.00784 0.98069 0.85642 0.90262 0.88266 0.92855 0.81865 0.88034 0.88286 0.88037 0.87908 0.85544 0.86671 0.86904 0.86772 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 14.05 29.01 0.41 -2.50 16 2 C -0.17 -3.02 9.49 -36.02 -0.34 -3.36 16 3 C 0.16 3.19 2.64 -29.04 -0.08 3.11 16 4 H 0.07 1.43 7.62 -51.93 -0.40 1.04 16 5 O -0.34 -7.70 5.59 -35.23 -0.20 -7.90 16 6 C 0.25 5.92 2.37 -29.04 -0.07 5.85 16 7 H 0.01 0.35 7.72 -51.93 -0.40 -0.05 16 8 C -0.55 -14.25 8.75 -34.45 -0.30 -14.55 16 9 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 10 C 0.09 2.32 5.25 -17.82 -0.09 2.23 16 11 N -0.84 -21.41 8.78 55.43 0.49 -20.93 16 12 Si 0.89 20.46 29.54 -169.99 -5.02 15.43 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C -0.03 -0.78 4.87 -104.62 -0.51 -1.29 16 17 C -0.06 -1.40 7.87 -39.58 -0.31 -1.71 16 18 C -0.15 -3.07 10.05 -39.58 -0.40 -3.47 16 19 C -0.15 -2.87 10.05 -39.58 -0.40 -3.26 16 20 C -0.14 -2.82 10.05 -39.58 -0.40 -3.21 16 21 C -0.13 -2.84 9.68 -39.58 -0.38 -3.22 16 22 C -0.09 -1.57 4.86 -104.63 -0.51 -2.08 16 23 C -0.09 -1.51 9.35 -39.58 -0.37 -1.88 16 24 C -0.13 -1.90 10.05 -39.58 -0.40 -2.29 16 25 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 26 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 27 C -0.12 -1.86 9.67 -39.59 -0.38 -2.24 16 28 H 0.13 2.66 6.88 -52.49 -0.36 2.30 16 29 H 0.08 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 31 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.16 4.03 5.46 -52.49 -0.29 3.74 16 33 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.13 2.30 7.77 -52.49 -0.41 1.89 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.12 1.65 8.04 -52.48 -0.42 1.23 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -26.56 346.51 -10.46 -37.02 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.62 Total: 9.41 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: -5.33 Total: -38.25 kcal Atomic # 7 Polarization: -21.41 SS G_CDS: 0.49 Total: -20.93 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.20 Total: -7.90 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -26.56 -10.46 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223310012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.227 kcal (2) G-P(sol) polarization free energy of solvation -26.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds