Wall clock time and date at job start Tue Mar 31 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99902 * 2 1 4 4 H 1.08997 * 109.47081 * 236.96064 * 3 2 1 5 5 O 1.42895 * 109.46988 * 356.96149 * 3 2 1 6 6 C 1.42898 * 113.99774 * 209.44217 * 5 3 2 7 7 H 1.08998 * 109.47069 * 327.91440 * 6 5 3 8 8 C 1.50692 * 109.47388 * 87.92026 * 6 5 3 9 9 H 1.08012 * 119.99982 * 234.24945 * 8 6 5 10 10 C 1.37873 * 120.00585 * 54.24356 * 8 6 5 11 11 N 1.31514 * 119.99510 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00449 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46759 * 60.00190 * 12 10 8 14 14 H 1.48504 * 109.47136 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47414 * 300.00462 * 12 10 8 16 16 C 1.50706 * 109.46775 * 207.91880 * 6 5 3 17 17 C 1.38234 * 120.00106 * 324.72163 * 16 6 5 18 18 C 1.38235 * 120.00139 * 179.81463 * 17 16 6 19 19 C 1.38234 * 119.99694 * 0.39448 * 18 17 16 20 20 C 1.38241 * 120.00205 * 359.86221 * 19 18 17 21 21 C 1.38231 * 119.99793 * 145.00188 * 16 6 5 22 22 C 1.50695 * 109.47016 * 116.96456 * 3 2 1 23 23 C 1.38243 * 119.99449 * 279.72381 * 22 3 2 24 24 C 1.38240 * 119.99671 * 179.78711 * 23 22 3 25 25 C 1.38239 * 119.99869 * 0.44551 * 24 23 22 26 26 C 1.38236 * 119.99880 * 359.81101 * 25 24 23 27 27 C 1.38227 * 120.00555 * 99.99997 * 22 3 2 28 28 H 1.07997 * 120.00123 * 353.99537 * 1 2 3 29 29 H 1.08004 * 119.99814 * 173.73068 * 1 2 3 30 30 H 1.08005 * 119.99934 * 180.02562 * 2 1 3 31 31 H 0.97007 * 119.99583 * 179.97438 * 11 10 8 32 32 H 1.07998 * 120.00007 * 0.02562 * 17 16 6 33 33 H 1.07993 * 120.00191 * 180.23430 * 18 17 16 34 34 H 1.08004 * 120.00200 * 179.83754 * 19 18 17 35 35 H 1.08005 * 119.99614 * 179.97438 * 20 19 18 36 36 H 1.07999 * 120.00586 * 359.97438 * 21 16 6 37 37 H 1.07998 * 120.00413 * 0.02562 * 23 22 3 38 38 H 1.07995 * 120.00199 * 180.27380 * 24 23 22 39 39 H 1.08003 * 119.99625 * 179.83027 * 25 24 23 40 40 H 1.08005 * 119.99586 * 179.97438 * 26 25 24 41 41 H 1.08007 * 120.00038 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.7304 1.3396 -0.8615 5 8 1.1365 2.3903 -0.0714 6 6 1.6526 3.5537 -0.7212 7 1 2.7240 3.6283 -0.5355 8 6 1.4055 3.4520 -2.2042 9 1 2.2279 3.5544 -2.8970 10 6 0.1298 3.2283 -2.6770 11 7 -0.8715 3.1041 -1.8335 12 14 -0.1765 3.1031 -4.5154 13 1 0.6154 1.9776 -5.0735 14 1 -1.6211 2.8623 -4.7613 15 1 0.2326 4.3701 -5.1729 16 6 0.9624 4.7791 -0.1797 17 6 -0.3723 4.7206 0.1752 18 6 -1.0044 5.8436 0.6754 19 6 -0.3038 7.0273 0.8130 20 6 1.0295 7.0873 0.4531 21 6 1.6625 5.9632 -0.0435 22 6 2.8726 1.4180 1.2663 23 6 2.2639 1.8153 2.4422 24 6 3.0051 1.9146 3.6049 25 6 4.3568 1.6256 3.5896 26 6 4.9665 1.2335 2.4125 27 6 4.2244 1.1299 1.2509 28 1 -0.5400 0.9301 0.0978 29 1 -0.5400 -0.9298 -0.1021 30 1 1.8500 -0.9354 -0.0004 31 1 -1.7692 2.9470 -2.1661 32 1 -0.9204 3.7966 0.0649 33 1 -2.0461 5.7969 0.9563 34 1 -0.7983 7.9055 1.2014 35 1 1.5767 8.0123 0.5602 36 1 2.7042 6.0101 -0.3247 37 1 1.2085 2.0443 2.4535 38 1 2.5287 2.2207 4.5245 39 1 4.9365 1.7059 4.4973 40 1 6.0227 1.0081 2.4005 41 1 4.7008 0.8235 0.3313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223310012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:57 Heat of formation + Delta-G solvation = 24.890219 kcal Electronic energy + Delta-G solvation = -23590.327634 eV Core-core repulsion = 20400.529773 eV Total energy + Delta-G solvation = -3189.797861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.50216 -39.71995 -38.10178 -35.31551 -33.78937 -31.98949 -31.86600 -31.59469 -31.25393 -28.54064 -26.67868 -24.70804 -23.33096 -23.01361 -22.34986 -21.78923 -20.32720 -18.61275 -17.67995 -17.56074 -17.00686 -16.61569 -16.19236 -16.06314 -15.52276 -15.31222 -14.97494 -14.78624 -14.58849 -14.14944 -14.03256 -13.75816 -13.68845 -13.34782 -13.22225 -12.82452 -12.78886 -12.57438 -12.30812 -12.12371 -11.97204 -11.80405 -11.59838 -11.46934 -10.98300 -10.62826 -10.22620 -9.78706 -9.72986 -9.51232 -9.42546 -9.13592 -7.91967 -6.23994 0.52571 0.59705 0.81962 0.97438 1.40383 1.41865 1.47234 1.59959 2.42841 2.97169 3.11916 3.33931 3.44782 4.00889 4.12668 4.22700 4.31442 4.36057 4.37174 4.39156 4.51998 4.59276 4.66693 4.69326 4.77194 4.85539 4.91643 5.10321 5.17157 5.20154 5.25454 5.37047 5.47662 5.63203 5.64878 5.68575 5.69822 5.84810 5.88147 5.89489 6.07137 6.13765 6.19763 6.21879 6.37166 6.54808 6.68273 7.17242 7.52755 8.95560 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.007003 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.499781 B = 3997.365026 C = 5309.107471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.166 4.166 3 C 0.156 3.844 4 H 0.051 0.949 5 O -0.352 6.352 6 C 0.255 3.745 7 H 0.001 0.999 8 C -0.574 4.574 9 H 0.044 0.956 10 C 0.057 3.943 11 N -0.847 5.847 12 Si 0.935 3.065 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.058 4.058 17 C -0.082 4.082 18 C -0.155 4.155 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.149 4.149 22 C -0.107 4.107 23 C -0.109 4.109 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.130 4.130 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.127 0.873 31 H 0.259 0.741 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -1.745 8.886 10.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.183 4.183 3 C 0.097 3.903 4 H 0.069 0.931 5 O -0.271 6.271 6 C 0.198 3.802 7 H 0.019 0.981 8 C -0.611 4.611 9 H 0.062 0.938 10 C -0.149 4.149 11 N -0.481 5.481 12 Si 0.762 3.238 13 H -0.202 1.202 14 H -0.206 1.206 15 H -0.207 1.207 16 C -0.059 4.059 17 C -0.100 4.100 18 C -0.173 4.173 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.167 4.167 22 C -0.108 4.108 23 C -0.127 4.127 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.148 4.148 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.145 0.855 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.307 -1.790 8.969 10.574 hybrid contribution -0.150 -0.028 -1.658 1.665 sum 5.158 -1.818 7.311 9.130 Atomic orbital electron populations 1.23832 0.96465 1.01782 0.97983 1.22865 0.96397 0.96302 1.02781 1.19581 0.90318 0.87830 0.92587 0.93109 1.88003 1.38248 1.22299 1.78509 1.18340 0.89618 0.82041 0.90154 0.98109 1.21543 0.94170 1.53050 0.92356 0.93800 1.25372 0.95831 0.93511 1.00150 1.69938 0.99579 1.44775 1.33815 0.86007 0.77148 0.78179 0.82494 1.20176 1.20570 1.20672 1.20164 0.95379 0.95516 0.94849 1.21712 0.94423 1.00050 0.93825 1.21417 1.00085 0.93971 1.01828 1.21231 0.94744 0.97978 1.02162 1.21137 0.95492 0.97985 1.01133 1.21034 0.99701 0.93711 1.02243 1.20592 0.94797 0.99446 0.95937 1.20973 0.99907 0.98946 0.92865 1.21391 0.95093 1.00361 0.97922 1.21453 0.94560 0.99330 0.99053 1.21403 1.00759 0.99692 0.92239 1.21240 0.93023 1.00987 0.99542 0.88885 0.87512 0.85515 0.93117 0.84201 0.86083 0.84413 0.84457 0.87346 0.87903 0.84624 0.83308 0.83445 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.29 14.05 67.78 0.95 -5.34 16 2 C -0.17 -6.20 9.49 25.65 0.24 -5.95 16 3 C 0.16 6.46 2.64 29.10 0.08 6.53 16 4 H 0.05 2.25 7.62 -2.39 -0.02 2.23 16 5 O -0.35 -16.83 5.59 -148.98 -0.83 -17.66 16 6 C 0.25 12.85 2.37 29.10 0.07 12.92 16 7 H 0.00 0.05 7.72 -2.39 -0.02 0.03 16 8 C -0.57 -31.19 8.75 25.60 0.22 -30.96 16 9 H 0.04 2.41 7.81 -2.90 -0.02 2.39 16 10 C 0.06 3.03 5.25 84.65 0.44 3.47 16 11 N -0.85 -44.74 8.78 21.45 0.19 -44.55 16 12 Si 0.94 42.90 29.54 68.60 2.03 44.92 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 16 C -0.06 -2.84 4.87 -19.87 -0.10 -2.93 16 17 C -0.08 -3.89 7.87 22.27 0.18 -3.71 16 18 C -0.15 -6.27 10.05 22.27 0.22 -6.05 16 19 C -0.14 -5.12 10.05 22.27 0.22 -4.89 16 20 C -0.14 -5.12 10.05 22.27 0.22 -4.90 16 21 C -0.15 -6.41 9.68 22.27 0.22 -6.20 16 22 C -0.11 -3.91 4.86 -19.87 -0.10 -4.01 16 23 C -0.11 -3.87 9.35 22.27 0.21 -3.66 16 24 C -0.13 -3.71 10.05 22.27 0.22 -3.49 16 25 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 26 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 27 C -0.13 -4.00 9.67 22.27 0.22 -3.78 16 28 H 0.09 4.23 6.88 -2.91 -0.02 4.21 16 29 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 31 H 0.26 13.27 8.31 -92.70 -0.77 12.50 16 32 H 0.14 7.30 5.46 -2.91 -0.02 7.28 16 33 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 34 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.10 4.04 7.77 -2.91 -0.02 4.02 16 38 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 41 H 0.13 3.53 8.04 -2.91 -0.02 3.51 16 Total: -1.00 -59.77 346.51 6.35 -53.42 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 1.00 Total: 32.54 kcal Atomic # 6 Polarization: -72.65 SS G_CDS: 3.97 Total: -68.67 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.19 Total: -44.55 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.83 Total: -17.66 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -59.77 6.35 -53.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223310012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.312 kcal (2) G-P(sol) polarization free energy of solvation -59.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds