Wall clock time and date at job start Tue Mar 31 2020 07:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32563 * 1 3 3 C 1.50698 * 120.00175 * 2 1 4 4 O 1.42899 * 109.47148 * 0.02562 * 3 2 1 5 5 C 1.42898 * 114.00025 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47259 * 330.00253 * 5 4 3 7 7 C 1.50699 * 109.46964 * 90.00040 * 5 4 3 8 8 H 1.07996 * 120.00370 * 239.99770 * 7 5 4 9 9 C 1.37882 * 119.99790 * 60.00152 * 7 5 4 10 10 N 1.31508 * 120.00257 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99910 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46950 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47438 * 119.99721 * 11 9 7 14 14 H 1.48500 * 109.46931 * 240.00169 * 11 9 7 15 15 C 1.50703 * 109.47171 * 210.00101 * 5 4 3 16 16 C 1.38236 * 119.99787 * 324.72807 * 15 5 4 17 17 C 1.38241 * 119.99636 * 179.81278 * 16 15 5 18 18 C 1.38234 * 120.00115 * 0.39672 * 17 16 15 19 19 C 1.38240 * 119.99714 * 359.85290 * 18 17 16 20 20 C 1.38228 * 120.00011 * 145.00451 * 15 5 4 21 21 C 1.47814 * 119.99848 * 180.02562 * 2 1 3 22 22 C 1.39538 * 120.14280 * 244.72332 * 21 2 1 23 23 C 1.37973 * 119.85397 * 179.76871 * 22 21 2 24 24 C 1.38348 * 120.14236 * 0.50722 * 23 22 21 25 25 C 1.38340 * 120.28497 * 359.75017 * 24 23 22 26 26 C 1.37970 * 120.14458 * 359.97438 * 25 24 23 27 27 H 1.08003 * 120.00100 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.00365 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47234 * 240.00133 * 3 2 1 30 30 H 1.09007 * 109.46641 * 120.00057 * 3 2 1 31 31 H 0.97002 * 120.00075 * 180.02562 * 10 9 7 32 32 H 1.07996 * 120.00216 * 359.97438 * 16 15 5 33 33 H 1.08000 * 119.99857 * 180.22806 * 17 16 15 34 34 H 1.07998 * 120.00030 * 179.84064 * 18 17 16 35 35 H 1.08003 * 119.99655 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.00508 * 359.97379 * 20 15 5 37 37 H 1.07998 * 120.06743 * 0.02721 * 22 21 2 38 38 H 1.07999 * 119.92878 * 180.24959 * 23 22 21 39 39 H 1.07997 * 119.85409 * 179.71745 * 24 23 22 40 40 H 1.08001 * 119.92768 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.07612 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 8 1.1506 2.3912 0.0006 5 6 1.7652 3.6813 0.0012 6 1 2.7250 3.6263 0.5150 7 6 1.9811 4.1355 -1.4194 8 1 2.9793 4.3479 -1.7726 9 6 0.9042 4.2800 -2.2682 10 7 -0.3113 4.0209 -1.8382 11 14 1.1719 4.8423 -4.0293 12 1 2.6213 5.0658 -4.2626 13 1 0.6748 3.7999 -4.9628 14 1 0.4325 6.1088 -4.2623 15 6 0.8704 4.6637 0.7122 16 6 -0.5031 4.5525 0.6023 17 6 -1.3239 5.4513 1.2576 18 6 -0.7711 6.4661 2.0162 19 6 0.6025 6.5803 2.1219 20 6 1.4232 5.6793 1.4696 21 6 2.0647 -1.2801 -0.0006 22 6 2.8612 -1.6298 1.0904 23 6 3.5447 -2.8284 1.0857 24 6 3.4498 -3.6779 -0.0022 25 6 2.6660 -3.3346 -1.0892 26 6 1.9730 -2.1416 -1.0945 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 2.7058 1.3628 -0.8900 30 1 2.7058 1.3627 0.8901 31 1 -1.0689 4.1222 -2.4355 32 1 -0.9349 3.7620 0.0065 33 1 -2.3970 5.3623 1.1747 34 1 -1.4123 7.1698 2.5261 35 1 1.0344 7.3734 2.7142 36 1 2.4964 5.7686 1.5523 37 1 2.9392 -0.9656 1.9384 38 1 4.1583 -3.1021 1.9312 39 1 3.9904 -4.6128 -0.0029 40 1 2.5965 -4.0019 -1.9355 41 1 1.3618 -1.8744 -1.9439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224734415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:51 Heat of formation + Delta-G solvation = 29.376786 kcal Electronic energy + Delta-G solvation = -22594.911224 eV Core-core repulsion = 19405.307915 eV Total energy + Delta-G solvation = -3189.603309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.08983 -38.24424 -36.58313 -34.14044 -32.51137 -30.82248 -30.44488 -29.62742 -29.13291 -26.75356 -25.47994 -23.00301 -22.43076 -22.27032 -21.30643 -20.10901 -18.59977 -16.74546 -16.54254 -15.92118 -15.23112 -15.10095 -14.85371 -14.52849 -14.21523 -13.88944 -13.68691 -13.42118 -13.30897 -12.91995 -12.66562 -12.36720 -12.11219 -12.02135 -11.55254 -11.48327 -11.05809 -10.99050 -10.90872 -10.69664 -10.50588 -10.23575 -10.12563 -9.80596 -9.21287 -8.99337 -8.84862 -8.72036 -8.31179 -7.99654 -7.71703 -7.41191 -5.94877 -4.27737 1.36724 1.50541 2.50309 2.65734 2.74922 3.23998 3.32410 3.35258 3.88898 4.33736 4.71219 5.01876 5.04541 5.04931 5.15245 5.23030 5.40257 5.59754 5.64769 5.69707 5.84073 5.97317 6.05567 6.10570 6.12972 6.17449 6.39474 6.45128 6.50624 6.52806 6.57709 6.62823 6.73196 6.85845 6.95749 7.04419 7.15175 7.24626 7.27818 7.39586 7.55258 7.65566 7.87686 8.06055 8.09934 8.33268 8.55746 8.95795 9.47749 10.89444 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.004490 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.807522 B = 6233.989023 C = 7311.695460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.115 3.885 4 O -0.365 6.365 5 C 0.246 3.754 6 H 0.017 0.983 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.086 3.914 10 N -0.847 5.847 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.283 1.283 15 C -0.040 4.040 16 C -0.043 4.043 17 C -0.155 4.155 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.130 4.130 21 C -0.031 4.031 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.122 4.122 26 C -0.109 4.109 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.261 0.739 32 H 0.165 0.835 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -9.330 4.778 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.110 4.110 3 C 0.037 3.963 4 O -0.284 6.284 5 C 0.190 3.810 6 H 0.035 0.965 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.120 4.120 10 N -0.482 5.482 11 Si 0.716 3.284 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.209 1.209 15 C -0.040 4.040 16 C -0.062 4.062 17 C -0.173 4.173 18 C -0.165 4.165 19 C -0.169 4.169 20 C -0.149 4.149 21 C -0.031 4.031 22 C -0.129 4.129 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.127 4.127 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.182 0.818 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.350 -9.356 4.703 10.732 hybrid contribution 0.400 0.605 -1.147 1.357 sum 2.750 -8.752 3.557 9.839 Atomic orbital electron populations 1.24179 0.94852 1.02102 0.97214 1.20384 0.94945 0.91819 1.03850 1.20748 0.91479 0.85341 0.98705 1.87954 1.32006 1.13492 1.94946 1.18542 0.88772 0.79868 0.93816 0.96539 1.21467 0.93667 1.47298 0.95567 0.92202 1.24951 0.95010 0.93632 0.98378 1.69811 0.98341 1.45938 1.34131 0.86600 0.78467 0.78410 0.84887 1.19767 1.20781 1.20856 1.19988 0.95078 0.96225 0.92756 1.21864 0.93040 0.99192 0.92136 1.21160 0.98906 0.97418 0.99835 1.20814 0.94771 0.99267 1.01642 1.20697 0.93778 0.99906 1.02499 1.20792 0.98563 0.96538 0.98969 1.19028 0.96318 0.93802 0.93932 1.21306 0.96623 0.96747 0.98190 1.21052 0.99855 0.94634 0.98450 1.21123 0.99802 0.99685 0.94239 1.21058 0.97642 0.96859 0.98413 1.21357 0.99525 0.93942 0.97865 0.89679 0.85535 0.93069 0.94798 0.92869 0.81832 0.88081 0.88338 0.88068 0.87887 0.85937 0.86273 0.86507 0.86268 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 13.70 28.82 0.39 -2.21 16 2 C -0.11 -1.96 5.44 -102.62 -0.56 -2.52 16 3 C 0.11 2.31 6.12 36.00 0.22 2.53 16 4 O -0.36 -8.55 6.95 -35.23 -0.24 -8.80 16 5 C 0.25 5.99 2.59 -29.03 -0.08 5.92 16 6 H 0.02 0.39 7.70 -51.93 -0.40 -0.01 16 7 C -0.54 -14.34 8.89 -34.44 -0.31 -14.65 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.09 2.26 5.24 -17.82 -0.09 2.17 16 10 N -0.85 -22.26 8.50 55.43 0.47 -21.79 16 11 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 C -0.04 -0.95 4.80 -104.62 -0.50 -1.45 16 16 C -0.04 -1.03 7.46 -39.58 -0.30 -1.32 16 17 C -0.15 -3.26 10.05 -39.58 -0.40 -3.65 16 18 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 19 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 20 C -0.13 -2.81 9.68 -39.59 -0.38 -3.20 16 21 C -0.03 -0.48 5.32 -105.01 -0.56 -1.04 16 22 C -0.11 -1.53 9.77 -39.19 -0.38 -1.91 16 23 C -0.12 -1.44 10.03 -39.64 -0.40 -1.84 16 24 C -0.13 -1.47 10.04 -39.50 -0.40 -1.87 16 25 C -0.12 -1.47 10.03 -39.64 -0.40 -1.86 16 26 C -0.11 -1.55 9.71 -39.19 -0.38 -1.93 16 27 H 0.08 1.31 8.05 -52.48 -0.42 0.89 16 28 H 0.13 2.55 6.88 -52.49 -0.36 2.18 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.64 8.08 -51.92 -0.42 0.22 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.16 4.14 5.50 -52.49 -0.29 3.85 16 33 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.10 2.04 8.06 -52.48 -0.42 1.61 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -27.65 348.27 -10.52 -38.16 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.67 Total: 6.95 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: -5.31 Total: -35.44 kcal Atomic # 7 Polarization: -22.26 SS G_CDS: 0.47 Total: -21.79 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.24 Total: -8.80 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.65 -10.52 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224734415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.540 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds