Wall clock time and date at job start Tue Mar 31 2020 07:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32563 * 1 3 3 C 1.50698 * 120.00175 * 2 1 4 4 O 1.42899 * 109.47148 * 0.02562 * 3 2 1 5 5 C 1.42898 * 114.00025 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47259 * 330.00253 * 5 4 3 7 7 C 1.50699 * 109.46964 * 90.00040 * 5 4 3 8 8 H 1.07996 * 120.00370 * 239.99770 * 7 5 4 9 9 C 1.37882 * 119.99790 * 60.00152 * 7 5 4 10 10 N 1.31508 * 120.00257 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99910 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46950 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47438 * 119.99721 * 11 9 7 14 14 H 1.48500 * 109.46931 * 240.00169 * 11 9 7 15 15 C 1.50703 * 109.47171 * 210.00101 * 5 4 3 16 16 C 1.38236 * 119.99787 * 324.72807 * 15 5 4 17 17 C 1.38241 * 119.99636 * 179.81278 * 16 15 5 18 18 C 1.38234 * 120.00115 * 0.39672 * 17 16 15 19 19 C 1.38240 * 119.99714 * 359.85290 * 18 17 16 20 20 C 1.38228 * 120.00011 * 145.00451 * 15 5 4 21 21 C 1.47814 * 119.99848 * 180.02562 * 2 1 3 22 22 C 1.39538 * 120.14280 * 244.72332 * 21 2 1 23 23 C 1.37973 * 119.85397 * 179.76871 * 22 21 2 24 24 C 1.38348 * 120.14236 * 0.50722 * 23 22 21 25 25 C 1.38340 * 120.28497 * 359.75017 * 24 23 22 26 26 C 1.37970 * 120.14458 * 359.97438 * 25 24 23 27 27 H 1.08003 * 120.00100 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.00365 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47234 * 240.00133 * 3 2 1 30 30 H 1.09007 * 109.46641 * 120.00057 * 3 2 1 31 31 H 0.97002 * 120.00075 * 180.02562 * 10 9 7 32 32 H 1.07996 * 120.00216 * 359.97438 * 16 15 5 33 33 H 1.08000 * 119.99857 * 180.22806 * 17 16 15 34 34 H 1.07998 * 120.00030 * 179.84064 * 18 17 16 35 35 H 1.08003 * 119.99655 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.00508 * 359.97379 * 20 15 5 37 37 H 1.07998 * 120.06743 * 0.02721 * 22 21 2 38 38 H 1.07999 * 119.92878 * 180.24959 * 23 22 21 39 39 H 1.07997 * 119.85409 * 179.71745 * 24 23 22 40 40 H 1.08001 * 119.92768 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.07612 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 8 1.1506 2.3912 0.0006 5 6 1.7652 3.6813 0.0012 6 1 2.7250 3.6263 0.5150 7 6 1.9811 4.1355 -1.4194 8 1 2.9793 4.3479 -1.7726 9 6 0.9042 4.2800 -2.2682 10 7 -0.3113 4.0209 -1.8382 11 14 1.1719 4.8423 -4.0293 12 1 2.6213 5.0658 -4.2626 13 1 0.6748 3.7999 -4.9628 14 1 0.4325 6.1088 -4.2623 15 6 0.8704 4.6637 0.7122 16 6 -0.5031 4.5525 0.6023 17 6 -1.3239 5.4513 1.2576 18 6 -0.7711 6.4661 2.0162 19 6 0.6025 6.5803 2.1219 20 6 1.4232 5.6793 1.4696 21 6 2.0647 -1.2801 -0.0006 22 6 2.8612 -1.6298 1.0904 23 6 3.5447 -2.8284 1.0857 24 6 3.4498 -3.6779 -0.0022 25 6 2.6660 -3.3346 -1.0892 26 6 1.9730 -2.1416 -1.0945 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 2.7058 1.3628 -0.8900 30 1 2.7058 1.3627 0.8901 31 1 -1.0689 4.1222 -2.4355 32 1 -0.9349 3.7620 0.0065 33 1 -2.3970 5.3623 1.1747 34 1 -1.4123 7.1698 2.5261 35 1 1.0344 7.3734 2.7142 36 1 2.4964 5.7686 1.5523 37 1 2.9392 -0.9656 1.9384 38 1 4.1583 -3.1021 1.9312 39 1 3.9904 -4.6128 -0.0029 40 1 2.5965 -4.0019 -1.9355 41 1 1.3618 -1.8744 -1.9439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224734415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:50 Heat of formation + Delta-G solvation = 18.855368 kcal Electronic energy + Delta-G solvation = -22595.367467 eV Core-core repulsion = 19405.307915 eV Total energy + Delta-G solvation = -3190.059551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21895 -39.87416 -38.23871 -35.63957 -34.31891 -32.14221 -31.80042 -31.27295 -30.34183 -28.61495 -27.11400 -24.74331 -23.65673 -23.27473 -22.94313 -21.84241 -19.88756 -18.65390 -17.83333 -17.31201 -17.05464 -16.57722 -16.22153 -15.97947 -15.67264 -15.50308 -15.13849 -15.00830 -14.51141 -14.27903 -14.13750 -13.81831 -13.76164 -13.38518 -13.21686 -12.93294 -12.84594 -12.66680 -12.47584 -12.04271 -12.02382 -11.86885 -11.70672 -11.48237 -11.05671 -10.71586 -10.36146 -9.85596 -9.81635 -9.42881 -9.37635 -9.15474 -7.90308 -6.32308 0.31724 0.51863 0.83027 1.00709 1.34876 1.36522 1.39613 1.48206 2.39192 2.84261 3.07064 3.31923 3.41252 3.98385 4.08894 4.14048 4.20189 4.30989 4.34693 4.38925 4.51262 4.56363 4.62630 4.65797 4.67575 4.79059 4.86512 4.98783 5.05451 5.17373 5.21606 5.28096 5.47951 5.50353 5.61129 5.62248 5.63844 5.67876 5.76710 5.88402 5.95793 6.06172 6.13413 6.17251 6.37450 6.53917 6.65417 7.09123 7.45908 8.89485 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.004490 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.807522 B = 6233.989023 C = 7311.695460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C 0.111 3.889 4 O -0.377 6.377 5 C 0.244 3.756 6 H 0.014 0.986 7 C -0.567 4.567 8 H 0.048 0.952 9 C 0.048 3.952 10 N -0.857 5.857 11 Si 0.941 3.059 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.280 1.280 15 C -0.067 4.067 16 C -0.065 4.065 17 C -0.162 4.162 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.057 4.057 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.124 4.124 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.259 0.741 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -9.929 5.607 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.106 4.106 3 C 0.034 3.966 4 O -0.296 6.296 5 C 0.188 3.812 6 H 0.032 0.968 7 C -0.604 4.604 8 H 0.067 0.933 9 C -0.156 4.156 10 N -0.492 5.492 11 Si 0.768 3.232 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.206 1.206 15 C -0.068 4.068 16 C -0.084 4.084 17 C -0.180 4.180 18 C -0.159 4.159 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.057 4.057 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.142 4.142 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.872 -9.959 5.541 11.753 hybrid contribution 0.278 0.749 -1.330 1.552 sum 3.150 -9.210 4.211 10.606 Atomic orbital electron populations 1.24081 0.94967 1.01766 0.98058 1.20408 0.95015 0.91978 1.03218 1.20857 0.91516 0.85910 0.98307 1.87939 1.32899 1.13870 1.94939 1.18512 0.89082 0.80503 0.93117 0.96820 1.21642 0.93307 1.48278 0.97128 0.93338 1.25533 0.94960 0.93902 1.01243 1.70008 0.98516 1.45950 1.34722 0.85785 0.78192 0.77949 0.81316 1.19735 1.20527 1.20616 1.20081 0.95262 0.97118 0.94303 1.21679 0.93443 0.99797 0.93447 1.21408 0.99738 0.97299 0.99602 1.21242 0.95345 0.98845 1.00464 1.21132 0.93839 0.99790 1.01553 1.21046 0.99644 0.96491 0.99042 1.18945 0.97979 0.93134 0.95637 1.21432 0.96897 0.97974 0.97778 1.21406 0.99209 0.93565 0.99626 1.21572 0.98749 1.00564 0.93216 1.21384 0.96779 0.96133 0.99646 1.21439 1.00424 0.94953 0.97412 0.87231 0.88556 0.94887 0.93733 0.93057 0.84366 0.86240 0.84469 0.84323 0.86804 0.85914 0.83404 0.83067 0.83651 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 13.70 66.67 0.91 -4.79 16 2 C -0.11 -3.98 5.44 -18.48 -0.10 -4.08 16 3 C 0.11 4.77 6.12 71.24 0.44 5.20 16 4 O -0.38 -18.82 6.95 -148.98 -1.03 -19.85 16 5 C 0.24 12.49 2.59 29.10 0.08 12.57 16 6 H 0.01 0.68 7.70 -2.39 -0.02 0.66 16 7 C -0.57 -31.21 8.89 25.60 0.23 -30.98 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.05 2.60 5.24 84.66 0.44 3.04 16 10 N -0.86 -46.76 8.50 21.45 0.18 -46.58 16 11 Si 0.94 43.44 29.54 68.60 2.03 45.46 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 C -0.07 -3.29 4.80 -19.87 -0.10 -3.38 16 16 C -0.06 -3.14 7.46 22.27 0.17 -2.97 16 17 C -0.16 -6.71 10.05 22.27 0.22 -6.48 16 18 C -0.14 -5.11 10.05 22.27 0.22 -4.89 16 19 C -0.15 -5.33 10.05 22.27 0.22 -5.11 16 20 C -0.14 -6.17 9.68 22.27 0.22 -5.95 16 21 C -0.06 -1.79 5.32 -20.12 -0.11 -1.89 16 22 C -0.12 -3.32 9.77 22.52 0.22 -3.10 16 23 C -0.12 -2.54 10.03 22.23 0.22 -2.31 16 24 C -0.12 -2.37 10.04 22.32 0.22 -2.14 16 25 C -0.12 -2.65 10.03 22.23 0.22 -2.43 16 26 C -0.12 -3.49 9.71 22.52 0.22 -3.27 16 27 H 0.11 3.48 8.05 -2.91 -0.02 3.45 16 28 H 0.10 4.20 6.88 -2.91 -0.02 4.18 16 29 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.78 8.08 -2.38 -0.02 1.76 16 31 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 32 H 0.14 7.40 5.50 -2.91 -0.02 7.38 16 33 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 34 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 35 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 36 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -61.87 348.27 6.13 -55.74 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 1.00 Total: 28.20 kcal Atomic # 6 Polarization: -66.93 SS G_CDS: 3.95 Total: -62.97 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.18 Total: -46.58 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -1.03 Total: -19.85 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -61.87 6.13 -55.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224734415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.600 kcal (2) G-P(sol) polarization free energy of solvation -61.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds