Wall clock time and date at job start Tue Mar 31 2020 07:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 O 1.42903 * 109.47239 * 120.00049 * 2 1 3 5 5 C 1.52998 * 109.47173 * 239.99534 * 2 1 3 6 6 N 1.46503 * 109.47270 * 180.02562 * 5 2 1 7 7 C 1.34778 * 119.99902 * 180.02562 * 6 5 2 8 8 O 1.21585 * 119.99995 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99858 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99732 * 179.97438 * 9 7 6 11 11 C 1.50707 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.38319 * 119.96386 * 269.72732 * 11 10 9 13 13 C 1.38285 * 120.13761 * 179.76665 * 12 11 10 14 14 C 1.38118 * 120.06620 * 0.50365 * 13 12 11 15 15 C 1.38861 * 119.93012 * 359.75302 * 14 13 12 16 16 O 1.35758 * 120.06695 * 179.97438 * 15 14 13 17 17 C 1.34827 * 116.99826 * 354.48514 * 16 15 14 18 18 H 1.07997 * 120.00660 * 5.05528 * 17 16 15 19 19 C 1.38654 * 119.99670 * 185.05901 * 17 16 15 20 20 N 1.31559 * 120.00103 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99939 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47206 * 60.00081 * 21 19 17 23 23 H 1.48506 * 109.46731 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47321 * 299.99926 * 21 19 17 25 25 C 1.38074 * 119.96512 * 90.00113 * 11 10 9 26 26 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46878 * 300.00283 * 1 2 3 28 28 H 1.08998 * 109.46846 * 59.99804 * 1 2 3 29 29 H 0.96705 * 113.99695 * 59.99207 * 4 2 1 30 30 H 1.08998 * 109.47408 * 300.00375 * 5 2 1 31 31 H 1.09006 * 109.46992 * 60.00564 * 5 2 1 32 32 H 0.96990 * 119.99785 * 0.02562 * 6 5 2 33 33 H 0.96997 * 119.99581 * 0.02562 * 9 7 6 34 34 H 1.08993 * 109.47613 * 300.00196 * 10 9 7 35 35 H 1.09007 * 109.47358 * 60.00340 * 10 9 7 36 36 H 1.07999 * 119.93765 * 359.97438 * 12 11 10 37 37 H 1.07995 * 119.96702 * 180.25753 * 13 12 11 38 38 H 1.07998 * 120.03658 * 179.76705 * 14 13 12 39 39 H 0.97006 * 120.00002 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.03691 * 359.95915 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7219 -1.2489 7 6 4.1788 -1.3052 -2.2599 8 8 3.5709 -1.8314 -3.1719 9 7 5.5266 -1.3053 -2.2599 10 6 6.2590 -1.9398 -3.3585 11 6 7.7407 -1.8027 -3.1197 12 6 8.4215 -0.7049 -3.6142 13 6 9.7802 -0.5730 -3.3931 14 6 10.4636 -1.5431 -2.6864 15 6 9.7839 -2.6491 -2.1932 16 8 10.4530 -3.6045 -1.4986 17 6 11.7931 -3.4788 -1.4202 18 1 12.2782 -2.6039 -1.8272 19 6 12.5485 -4.4728 -0.8171 20 7 11.9576 -5.5383 -0.3208 21 14 14.4053 -4.2990 -0.7091 22 1 14.7440 -3.0746 0.0599 23 1 14.9745 -5.4869 -0.0233 24 1 14.9734 -4.1971 -2.0773 25 6 8.4183 -2.7760 -2.4125 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7209 -1.5952 1.2329 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9899 -0.3025 -0.5211 33 1 6.0116 -0.8858 -1.5321 34 1 5.9957 -2.9963 -3.4084 35 1 5.9957 -1.4550 -4.2986 36 1 7.8903 0.0527 -4.1713 37 1 10.3082 0.2873 -3.7769 38 1 11.5254 -1.4415 -2.5172 39 1 12.4862 -6.2339 0.1008 40 1 7.8869 -3.6348 -2.0299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255868269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:30 Heat of formation + Delta-G solvation = -90.442174 kcal Electronic energy + Delta-G solvation = -22380.312137 eV Core-core repulsion = 18774.663825 eV Total energy + Delta-G solvation = -3605.648312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06373 -39.10298 -38.10922 -36.80889 -34.54779 -34.27287 -32.33712 -31.63134 -30.57845 -29.12976 -26.91331 -25.56627 -24.77083 -22.18269 -21.71216 -20.94393 -20.75374 -18.59427 -17.73240 -17.25822 -16.78822 -16.50421 -15.84906 -15.41568 -15.07900 -14.64714 -14.56382 -14.44986 -14.30662 -13.77777 -13.61423 -13.52932 -13.09338 -12.83545 -12.62446 -12.38277 -12.35872 -12.05859 -11.67020 -11.37208 -11.30552 -10.92776 -10.81945 -10.70623 -10.58333 -10.49508 -10.18556 -9.41437 -9.31611 -8.88962 -8.76110 -8.24972 -7.32831 -6.48973 -4.08618 1.87055 2.26872 2.82412 3.10522 3.11873 3.14615 3.25748 3.92683 3.94500 4.26710 4.30740 4.55331 4.63262 4.72997 4.94367 5.07180 5.12765 5.24040 5.29202 5.40749 5.55005 5.59526 5.69582 5.77688 5.85584 5.93547 6.07793 6.25560 6.34928 6.55700 6.57485 6.82158 6.92628 7.00738 7.19677 7.21053 7.27607 7.35803 7.71152 7.94966 8.05227 8.63431 8.96202 9.64926 10.68708 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.002615 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.994733 B =10703.559131 C =11397.057682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.090 3.910 3 H 0.105 0.895 4 O -0.561 6.561 5 C 0.108 3.892 6 N -0.745 5.745 7 C 0.703 3.297 8 O -0.598 6.598 9 N -0.736 5.736 10 C 0.187 3.813 11 C -0.073 4.073 12 C -0.194 4.194 13 C -0.077 4.077 14 C -0.226 4.226 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.170 4.170 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.379 0.621 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.399 0.601 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.271 0.729 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.341 11.275 -0.028 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.031 3.969 3 H 0.123 0.877 4 O -0.366 6.366 5 C -0.018 4.018 6 N -0.402 5.402 7 C 0.402 3.598 8 O -0.477 6.477 9 N -0.390 5.390 10 C 0.064 3.936 11 C -0.073 4.073 12 C -0.214 4.214 13 C -0.095 4.095 14 C -0.245 4.245 15 C 0.096 3.904 16 O -0.079 6.079 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.190 4.190 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.226 0.774 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.235 0.765 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.639 10.915 -0.531 19.906 hybrid contribution 1.218 -0.010 0.529 1.328 sum -15.421 10.905 -0.002 18.887 Atomic orbital electron populations 1.22418 0.95244 1.03126 1.03275 1.22179 0.93698 0.97031 0.84001 0.87736 1.86602 1.77168 1.29481 1.43395 1.21904 0.79762 1.01444 0.98659 1.44962 1.06661 1.62800 1.25761 1.15958 0.81905 0.79396 0.82496 1.90909 1.68031 1.51326 1.37454 1.45248 1.04151 1.62129 1.27509 1.19995 0.86894 0.98041 0.88716 1.19278 0.93457 0.95250 0.99362 1.20483 0.94583 0.99226 1.07081 1.20746 0.94005 0.97595 0.97151 1.21239 1.01075 0.96418 1.05786 1.19329 0.91749 0.89020 0.90306 1.83984 1.21224 1.42079 1.60652 1.21274 0.78701 1.06839 1.40170 0.89091 1.25298 1.00476 0.94547 0.96146 1.70030 1.36486 1.07935 1.35138 0.85778 0.80488 0.78232 0.78917 1.19490 1.20247 1.19468 1.20093 0.92283 1.01099 1.05479 0.91860 0.91231 0.91131 0.77354 0.91425 0.90847 0.76490 0.76667 0.91054 0.91142 0.87502 0.87297 0.85478 0.91894 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 9.53 37.16 0.35 -0.52 16 2 C 0.09 0.57 3.67 -26.73 -0.10 0.48 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 4 O -0.56 -4.27 13.08 -35.23 -0.46 -4.73 16 5 C 0.11 0.92 5.34 -4.04 -0.02 0.90 16 6 N -0.75 -7.78 5.45 -65.22 -0.36 -8.13 16 7 C 0.70 10.00 8.57 -86.92 -0.74 9.25 16 8 O -0.60 -10.75 16.34 5.29 0.09 -10.67 16 9 N -0.74 -9.95 5.55 -66.42 -0.37 -10.32 16 10 C 0.19 2.82 5.80 -5.19 -0.03 2.79 16 11 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 12 C -0.19 -3.18 9.70 -39.53 -0.38 -3.57 16 13 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 14 C -0.23 -4.71 9.17 -39.39 -0.36 -5.07 16 15 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 16 O -0.18 -4.92 9.76 0.03 0.00 -4.92 16 17 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 18 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -24.98 13.67 55.48 0.76 -24.23 16 21 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.17 -3.45 9.64 -39.40 -0.38 -3.83 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.38 1.88 9.05 45.56 0.41 2.29 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 3.54 8.36 -40.82 -0.34 3.20 16 33 H 0.40 4.81 8.48 -40.82 -0.35 4.46 16 34 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -33.32 347.29 -7.43 -40.75 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.62 Total: 11.22 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.67 Total: -9.37 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.03 Total: -42.68 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.37 Total: -20.32 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.32 -7.43 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255868269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.695 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds