Wall clock time and date at job start Tue Mar 31 2020 07:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 O 1.42903 * 109.47239 * 120.00049 * 2 1 3 5 5 C 1.52998 * 109.47173 * 239.99534 * 2 1 3 6 6 N 1.46503 * 109.47270 * 180.02562 * 5 2 1 7 7 C 1.34778 * 119.99902 * 180.02562 * 6 5 2 8 8 O 1.21585 * 119.99995 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99858 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99732 * 179.97438 * 9 7 6 11 11 C 1.50707 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.38319 * 119.96386 * 269.72732 * 11 10 9 13 13 C 1.38285 * 120.13761 * 179.76665 * 12 11 10 14 14 C 1.38118 * 120.06620 * 0.50365 * 13 12 11 15 15 C 1.38861 * 119.93012 * 359.75302 * 14 13 12 16 16 O 1.35758 * 120.06695 * 179.97438 * 15 14 13 17 17 C 1.34827 * 116.99826 * 354.48514 * 16 15 14 18 18 H 1.07997 * 120.00660 * 5.05528 * 17 16 15 19 19 C 1.38654 * 119.99670 * 185.05901 * 17 16 15 20 20 N 1.31559 * 120.00103 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99939 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47206 * 60.00081 * 21 19 17 23 23 H 1.48506 * 109.46731 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47321 * 299.99926 * 21 19 17 25 25 C 1.38074 * 119.96512 * 90.00113 * 11 10 9 26 26 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46878 * 300.00283 * 1 2 3 28 28 H 1.08998 * 109.46846 * 59.99804 * 1 2 3 29 29 H 0.96705 * 113.99695 * 59.99207 * 4 2 1 30 30 H 1.08998 * 109.47408 * 300.00375 * 5 2 1 31 31 H 1.09006 * 109.46992 * 60.00564 * 5 2 1 32 32 H 0.96990 * 119.99785 * 0.02562 * 6 5 2 33 33 H 0.96997 * 119.99581 * 0.02562 * 9 7 6 34 34 H 1.08993 * 109.47613 * 300.00196 * 10 9 7 35 35 H 1.09007 * 109.47358 * 60.00340 * 10 9 7 36 36 H 1.07999 * 119.93765 * 359.97438 * 12 11 10 37 37 H 1.07995 * 119.96702 * 180.25753 * 13 12 11 38 38 H 1.07998 * 120.03658 * 179.76705 * 14 13 12 39 39 H 0.97006 * 120.00002 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.03691 * 359.95915 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7219 -1.2489 7 6 4.1788 -1.3052 -2.2599 8 8 3.5709 -1.8314 -3.1719 9 7 5.5266 -1.3053 -2.2599 10 6 6.2590 -1.9398 -3.3585 11 6 7.7407 -1.8027 -3.1197 12 6 8.4215 -0.7049 -3.6142 13 6 9.7802 -0.5730 -3.3931 14 6 10.4636 -1.5431 -2.6864 15 6 9.7839 -2.6491 -2.1932 16 8 10.4530 -3.6045 -1.4986 17 6 11.7931 -3.4788 -1.4202 18 1 12.2782 -2.6039 -1.8272 19 6 12.5485 -4.4728 -0.8171 20 7 11.9576 -5.5383 -0.3208 21 14 14.4053 -4.2990 -0.7091 22 1 14.7440 -3.0746 0.0599 23 1 14.9745 -5.4869 -0.0233 24 1 14.9734 -4.1971 -2.0773 25 6 8.4183 -2.7760 -2.4125 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7209 -1.5952 1.2329 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9899 -0.3025 -0.5211 33 1 6.0116 -0.8858 -1.5321 34 1 5.9957 -2.9963 -3.4084 35 1 5.9957 -1.4550 -4.2986 36 1 7.8903 0.0527 -4.1713 37 1 10.3082 0.2873 -3.7769 38 1 11.5254 -1.4415 -2.5172 39 1 12.4862 -6.2339 0.1008 40 1 7.8869 -3.6348 -2.0299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255868269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:30 Heat of formation + Delta-G solvation = -117.267501 kcal Electronic energy + Delta-G solvation = -22381.475370 eV Core-core repulsion = 18774.663825 eV Total energy + Delta-G solvation = -3606.811545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22021 -40.69035 -38.86508 -38.38197 -35.76550 -35.27511 -34.28138 -32.49516 -31.72621 -30.73226 -27.94449 -27.28101 -26.03527 -23.26489 -22.77175 -22.45525 -21.93028 -19.86399 -19.28211 -18.76167 -17.86058 -17.21636 -16.86800 -16.69251 -16.55181 -16.12196 -16.01185 -15.60375 -15.46596 -15.23034 -14.95736 -14.55512 -14.33511 -13.97182 -13.88729 -13.57893 -13.32003 -13.19814 -13.00330 -12.77351 -12.52084 -12.37639 -12.26926 -12.14111 -11.80904 -11.50524 -11.21261 -11.08113 -10.79967 -10.41661 -9.79834 -9.76031 -9.03330 -8.46651 -6.15340 0.36935 0.70825 1.35897 1.46102 1.52068 1.78666 2.12936 2.17990 2.81360 3.12258 3.32085 3.41988 3.55654 3.71274 3.83667 4.07835 4.10188 4.24928 4.31465 4.43023 4.53460 4.59647 4.62954 4.72396 4.75543 4.87316 5.02268 5.11792 5.14337 5.25986 5.27011 5.40218 5.49294 5.62543 5.70926 5.72268 5.95955 6.02119 6.17309 6.77001 6.97976 7.04808 7.54347 7.78346 8.76273 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.002615 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.994733 B =10703.559131 C =11397.057682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.100 3.900 3 H 0.110 0.890 4 O -0.577 6.577 5 C 0.106 3.894 6 N -0.731 5.731 7 C 0.700 3.300 8 O -0.637 6.637 9 N -0.730 5.730 10 C 0.194 3.806 11 C -0.058 4.058 12 C -0.167 4.167 13 C -0.070 4.070 14 C -0.234 4.234 15 C 0.111 3.889 16 O -0.232 6.232 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.257 1.257 25 C -0.180 4.180 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.389 0.611 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.410 0.590 33 H 0.408 0.592 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.912 14.301 -0.992 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.041 3.959 3 H 0.128 0.872 4 O -0.384 6.384 5 C -0.019 4.019 6 N -0.387 5.387 7 C 0.400 3.600 8 O -0.519 6.519 9 N -0.386 5.386 10 C 0.070 3.930 11 C -0.059 4.059 12 C -0.186 4.186 13 C -0.087 4.087 14 C -0.253 4.253 15 C 0.061 3.939 16 O -0.139 6.139 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.837 3.163 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.200 4.200 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.238 0.762 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.247 0.753 33 H 0.243 0.757 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.249 14.008 -1.485 22.270 hybrid contribution 1.103 -0.744 0.686 1.497 sum -16.146 13.263 -0.799 20.910 Atomic orbital electron populations 1.22381 0.93857 1.03599 1.03793 1.22149 0.94619 0.96701 0.82471 0.87193 1.86576 1.77605 1.30482 1.43762 1.22067 0.78441 1.01463 0.99912 1.44919 1.07479 1.61518 1.24825 1.16100 0.81863 0.79329 0.82740 1.90885 1.68742 1.53104 1.39172 1.45068 1.04108 1.61962 1.27413 1.19861 0.85489 0.97878 0.89801 1.19437 0.94425 0.94358 0.97660 1.21000 0.94260 0.98782 1.04566 1.21167 0.94530 0.97566 0.95477 1.21380 1.01092 0.96597 1.06262 1.19860 0.92863 0.89573 0.91580 1.83950 1.21663 1.44594 1.63690 1.21792 0.79200 1.07552 1.40379 0.87874 1.26598 1.06004 0.93947 0.95569 1.70185 1.38640 1.09440 1.37706 0.84652 0.73454 0.78643 0.79510 1.18008 1.19856 1.18169 1.20218 0.91492 1.01958 1.06370 0.91476 0.90935 0.90344 0.76186 0.92087 0.90920 0.75342 0.75660 0.92269 0.89699 0.83398 0.83277 0.86101 0.91878 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.53 71.98 0.69 -0.67 16 2 C 0.10 1.08 3.67 30.59 0.11 1.19 16 3 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 4 O -0.58 -7.84 13.08 -148.98 -1.95 -9.79 16 5 C 0.11 1.65 5.34 86.38 0.46 2.11 16 6 N -0.73 -14.03 5.45 -478.53 -2.61 -16.64 16 7 C 0.70 18.85 8.57 179.05 1.53 20.39 16 8 O -0.64 -22.25 16.34 -3.98 -0.07 -22.32 16 9 N -0.73 -18.35 5.55 -482.30 -2.68 -21.03 16 10 C 0.19 5.45 5.80 85.64 0.50 5.95 16 11 C -0.06 -1.86 5.25 -19.88 -0.10 -1.96 16 12 C -0.17 -4.75 9.70 22.30 0.22 -4.53 16 13 C -0.07 -2.17 10.04 22.25 0.22 -1.95 16 14 C -0.23 -9.62 9.17 22.39 0.21 -9.41 16 15 C 0.11 5.37 6.65 22.58 0.15 5.52 16 16 O -0.23 -13.76 9.76 -22.80 -0.22 -13.98 16 17 C -0.41 -23.65 9.49 67.92 0.64 -23.00 16 18 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 20 N -0.92 -56.41 13.67 21.61 0.30 -56.11 16 21 Si 1.02 42.26 29.55 68.60 2.03 44.29 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 25 C -0.18 -7.45 9.64 22.39 0.22 -7.23 16 26 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.39 3.35 9.05 -74.05 -0.67 2.68 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.41 6.41 8.36 -92.72 -0.78 5.63 16 33 H 0.41 8.92 8.48 -92.71 -0.79 8.13 16 34 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.08 2.21 8.08 -2.38 -0.02 2.19 16 36 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 37 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 39 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -76.58 347.29 -1.03 -77.61 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -1.14 Total: 32.45 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 5.31 Total: -14.47 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -4.99 Total: -93.78 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -2.24 Total: -46.09 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -76.58 -1.03 -77.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255868269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.658 kcal (2) G-P(sol) polarization free energy of solvation -76.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds