Wall clock time and date at job start Tue Mar 31 2020 07:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46900 * 2 1 4 4 O 1.42896 * 109.47071 * 119.99756 * 2 1 3 5 5 C 1.52998 * 109.47124 * 239.99793 * 2 1 3 6 6 N 1.46502 * 109.47125 * 179.97438 * 5 2 1 7 7 C 1.46495 * 120.00175 * 90.00268 * 6 5 2 8 8 C 1.34781 * 120.00250 * 270.00283 * 6 5 2 9 9 O 1.21596 * 119.99616 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00265 * 179.97438 * 8 6 5 11 11 C 1.40029 * 119.99646 * 174.69956 * 10 8 6 12 12 C 1.38907 * 120.00302 * 326.15316 * 11 10 8 13 13 C 1.38014 * 119.99895 * 179.81275 * 12 11 10 14 14 C 1.38901 * 119.99859 * 0.45312 * 13 12 11 15 15 O 1.35780 * 119.99894 * 179.76407 * 14 13 12 16 16 C 1.34810 * 117.00229 * 185.93849 * 15 14 13 17 17 H 1.07996 * 120.00006 * 5.40486 * 16 15 14 18 18 C 1.38628 * 120.00027 * 185.40827 * 16 15 14 19 19 N 1.31571 * 120.00286 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00144 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46767 * 90.00013 * 20 18 16 22 22 H 1.48494 * 109.47305 * 209.99909 * 20 18 16 23 23 H 1.48504 * 109.46827 * 330.00190 * 20 18 16 24 24 C 1.38906 * 120.00489 * 359.78258 * 14 13 12 25 25 C 1.38011 * 119.99965 * 0.02562 * 24 14 13 26 26 H 1.09006 * 109.46900 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47341 * 299.99962 * 1 2 3 28 28 H 1.08994 * 109.46837 * 60.00648 * 1 2 3 29 29 H 0.96700 * 113.99925 * 60.00274 * 4 2 1 30 30 H 1.09002 * 109.47396 * 60.00269 * 5 2 1 31 31 H 1.08992 * 109.47537 * 299.99765 * 5 2 1 32 32 H 1.09008 * 109.47189 * 270.00272 * 7 6 5 33 33 H 1.09002 * 109.47614 * 150.00342 * 7 6 5 34 34 H 1.08994 * 109.47185 * 29.99500 * 7 6 5 35 35 H 0.96999 * 119.99694 * 354.69210 * 10 8 6 36 36 H 1.08005 * 120.00057 * 0.02562 * 12 11 10 37 37 H 1.07992 * 119.99862 * 180.19203 * 13 12 11 38 38 H 0.97002 * 120.00401 * 179.97438 * 19 18 16 39 39 H 1.07996 * 119.99826 * 179.97438 * 24 14 13 40 40 H 1.07993 * 119.99791 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7208 -1.2495 7 6 4.2381 -1.8191 -0.6152 8 6 4.1785 0.2903 -1.8334 9 8 3.5701 1.2017 -2.3603 10 7 5.5262 0.2910 -1.8332 11 6 6.2258 1.2809 -2.5343 12 6 5.7077 1.7916 -3.7176 13 6 6.3954 2.7700 -4.4065 14 6 7.6102 3.2373 -3.9215 15 8 8.2891 4.1964 -4.6017 16 6 9.5164 4.5177 -4.1456 17 1 9.9528 3.9594 -3.3306 18 6 10.2181 5.5647 -4.7227 19 7 9.6867 6.2446 -5.7158 20 14 11.9184 6.0104 -4.0902 21 1 12.9429 5.2388 -4.8388 22 1 12.1536 7.4637 -4.2844 23 1 12.0104 5.6828 -2.6447 24 6 8.1308 2.7231 -2.7407 25 6 7.4412 1.7476 -2.0497 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.7210 -1.5951 1.2329 30 1 1.6767 -0.2075 -2.1392 31 1 1.6768 -1.7489 -1.2492 32 1 4.4199 -1.5776 0.4321 33 1 5.1905 -1.9629 -1.1254 34 1 3.6493 -2.7341 -0.6800 35 1 6.0115 -0.3941 -1.3474 36 1 4.7650 1.4255 -4.0968 37 1 5.9911 3.1693 -5.3248 38 1 10.1776 6.9775 -6.1194 39 1 9.0755 3.0862 -2.3639 40 1 7.8462 1.3475 -1.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261214022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:15 Heat of formation + Delta-G solvation = -67.953633 kcal Electronic energy + Delta-G solvation = -23119.516267 eV Core-core repulsion = 19514.843132 eV Total energy + Delta-G solvation = -3604.673135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54263 -38.90537 -37.96348 -36.51819 -35.16632 -33.90521 -32.16144 -31.58620 -30.16496 -28.14232 -27.56189 -25.84303 -25.09025 -22.38148 -22.15851 -21.27766 -19.83086 -18.41062 -17.85918 -17.27625 -16.85864 -16.41182 -15.87446 -15.74145 -14.97845 -14.53155 -14.48538 -14.16487 -13.89580 -13.57655 -13.45217 -13.17557 -12.91451 -12.78330 -12.71610 -12.45285 -12.27977 -11.89421 -11.77269 -11.53347 -11.47760 -11.22532 -11.04448 -10.67525 -10.62957 -10.42772 -9.91560 -9.62903 -9.20947 -8.75343 -8.61870 -8.15143 -6.84949 -6.40348 -3.98298 2.20927 2.27284 2.60649 3.14305 3.16066 3.21019 3.33767 3.93540 4.00620 4.09800 4.53087 4.63049 4.68974 4.81086 4.86779 5.06686 5.14780 5.17929 5.36826 5.38232 5.45640 5.46234 5.60205 5.74536 5.79610 5.83920 6.14529 6.21926 6.29693 6.38963 6.69924 6.87129 6.95465 7.14808 7.25844 7.28155 7.34659 7.47197 7.84769 7.99892 8.04351 8.68506 9.05146 9.76653 10.77884 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035986 B = 0.002769 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.902369 B =10110.467414 C =10350.231285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 H 0.104 0.896 4 O -0.558 6.558 5 C 0.104 3.896 6 N -0.629 5.629 7 C 0.081 3.919 8 C 0.701 3.299 9 O -0.575 6.575 10 N -0.674 5.674 11 C 0.056 3.944 12 C -0.068 4.068 13 C -0.176 4.176 14 C 0.145 3.855 15 O -0.178 6.178 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.217 4.217 25 C -0.093 4.093 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.367 0.633 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.397 0.603 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.269 0.731 39 H 0.131 0.869 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.715 -17.924 11.333 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.023 3.977 3 H 0.122 0.878 4 O -0.362 6.362 5 C -0.020 4.020 6 N -0.366 5.366 7 C -0.062 4.062 8 C 0.403 3.597 9 O -0.452 6.452 10 N -0.322 5.322 11 C -0.036 4.036 12 C -0.088 4.088 13 C -0.196 4.196 14 C 0.091 3.909 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.237 4.237 25 C -0.114 4.114 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.214 0.786 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.149 0.851 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.886 -16.364 10.693 23.413 hybrid contribution 0.826 -0.720 0.609 1.254 sum -12.060 -17.084 11.302 23.771 Atomic orbital electron populations 1.22428 0.95890 1.02405 1.03298 1.22444 0.92906 0.97782 0.84604 0.87808 1.86659 1.77112 1.28460 1.44008 1.22062 0.79006 1.01099 0.99795 1.46836 1.06059 1.23356 1.60369 1.21739 0.96789 0.89511 0.98206 1.15880 0.81933 0.82299 0.79569 1.90936 1.67489 1.36071 1.50693 1.42475 1.04260 1.31073 1.54400 1.17051 0.94854 0.97277 0.94467 1.20613 0.98996 0.96619 0.92549 1.20117 0.95427 1.01537 1.02545 1.19404 0.91445 0.89526 0.90509 1.84004 1.28638 1.47049 1.48483 1.21293 0.89633 1.16427 1.19313 0.89156 1.25278 0.99939 0.95234 0.96139 1.70047 1.37870 1.19875 1.22052 0.85724 0.80518 0.78140 0.79094 1.19932 1.20308 1.19238 1.20962 1.03072 1.01875 0.97808 1.20439 0.94761 0.97420 0.98762 0.92350 0.91560 0.91149 0.78641 0.88747 0.90468 0.92049 0.91669 0.91164 0.76685 0.85775 0.86167 0.92068 0.85123 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.53 37.16 0.35 -0.86 16 2 C 0.08 0.75 3.86 -26.73 -0.10 0.64 16 3 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 4 O -0.56 -4.84 12.56 -35.23 -0.44 -5.28 16 5 C 0.10 0.92 5.14 -4.04 -0.02 0.90 16 6 N -0.63 -6.78 2.80 -187.35 -0.52 -7.31 16 7 C 0.08 0.57 9.66 59.84 0.58 1.15 16 8 C 0.70 10.77 8.01 -86.92 -0.70 10.07 16 9 O -0.58 -11.06 13.64 5.28 0.07 -10.99 16 10 N -0.67 -9.97 5.18 -14.18 -0.07 -10.05 16 11 C 0.06 1.05 6.27 -83.61 -0.52 0.52 16 12 C -0.07 -1.38 8.65 -39.42 -0.34 -1.72 16 13 C -0.18 -3.99 9.99 -39.42 -0.39 -4.38 16 14 C 0.14 3.60 6.65 -39.09 -0.26 3.34 16 15 O -0.18 -5.18 9.75 0.01 0.00 -5.18 16 16 C -0.39 -11.01 9.44 30.88 0.29 -10.72 16 17 H 0.09 2.34 5.29 -52.49 -0.28 2.06 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 20 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.22 -4.78 9.13 -39.42 -0.36 -5.14 16 25 C -0.09 -1.74 9.96 -39.41 -0.39 -2.13 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.37 1.62 9.05 45.56 0.41 2.03 16 30 H 0.09 0.99 7.42 -51.93 -0.39 0.60 16 31 H 0.08 0.44 7.89 -51.93 -0.41 0.03 16 32 H 0.06 0.43 8.01 -51.92 -0.42 0.01 16 33 H 0.06 0.42 6.45 -51.93 -0.33 0.09 16 34 H 0.07 0.32 7.89 -51.93 -0.41 -0.09 16 35 H 0.40 4.49 6.63 -40.82 -0.27 4.22 16 36 H 0.12 2.48 6.45 -52.48 -0.34 2.15 16 37 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.13 2.84 5.71 -52.49 -0.30 2.54 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -35.22 338.03 -6.50 -41.72 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.40 Total: 8.60 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.96 Total: -7.36 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.16 Total: -42.27 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.37 Total: -21.45 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.22 -6.50 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261214022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.232 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds