Wall clock time and date at job start Tue Mar 31 2020 07:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46900 * 2 1 4 4 O 1.42896 * 109.47071 * 119.99756 * 2 1 3 5 5 C 1.52998 * 109.47124 * 239.99793 * 2 1 3 6 6 N 1.46502 * 109.47125 * 179.97438 * 5 2 1 7 7 C 1.46495 * 120.00175 * 90.00268 * 6 5 2 8 8 C 1.34781 * 120.00250 * 270.00283 * 6 5 2 9 9 O 1.21596 * 119.99616 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00265 * 179.97438 * 8 6 5 11 11 C 1.40029 * 119.99646 * 174.69956 * 10 8 6 12 12 C 1.38907 * 120.00302 * 326.15316 * 11 10 8 13 13 C 1.38014 * 119.99895 * 179.81275 * 12 11 10 14 14 C 1.38901 * 119.99859 * 0.45312 * 13 12 11 15 15 O 1.35780 * 119.99894 * 179.76407 * 14 13 12 16 16 C 1.34810 * 117.00229 * 185.93849 * 15 14 13 17 17 H 1.07996 * 120.00006 * 5.40486 * 16 15 14 18 18 C 1.38628 * 120.00027 * 185.40827 * 16 15 14 19 19 N 1.31571 * 120.00286 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00144 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46767 * 90.00013 * 20 18 16 22 22 H 1.48494 * 109.47305 * 209.99909 * 20 18 16 23 23 H 1.48504 * 109.46827 * 330.00190 * 20 18 16 24 24 C 1.38906 * 120.00489 * 359.78258 * 14 13 12 25 25 C 1.38011 * 119.99965 * 0.02562 * 24 14 13 26 26 H 1.09006 * 109.46900 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47341 * 299.99962 * 1 2 3 28 28 H 1.08994 * 109.46837 * 60.00648 * 1 2 3 29 29 H 0.96700 * 113.99925 * 60.00274 * 4 2 1 30 30 H 1.09002 * 109.47396 * 60.00269 * 5 2 1 31 31 H 1.08992 * 109.47537 * 299.99765 * 5 2 1 32 32 H 1.09008 * 109.47189 * 270.00272 * 7 6 5 33 33 H 1.09002 * 109.47614 * 150.00342 * 7 6 5 34 34 H 1.08994 * 109.47185 * 29.99500 * 7 6 5 35 35 H 0.96999 * 119.99694 * 354.69210 * 10 8 6 36 36 H 1.08005 * 120.00057 * 0.02562 * 12 11 10 37 37 H 1.07992 * 119.99862 * 180.19203 * 13 12 11 38 38 H 0.97002 * 120.00401 * 179.97438 * 19 18 16 39 39 H 1.07996 * 119.99826 * 179.97438 * 24 14 13 40 40 H 1.07993 * 119.99791 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7208 -1.2495 7 6 4.2381 -1.8191 -0.6152 8 6 4.1785 0.2903 -1.8334 9 8 3.5701 1.2017 -2.3603 10 7 5.5262 0.2910 -1.8332 11 6 6.2258 1.2809 -2.5343 12 6 5.7077 1.7916 -3.7176 13 6 6.3954 2.7700 -4.4065 14 6 7.6102 3.2373 -3.9215 15 8 8.2891 4.1964 -4.6017 16 6 9.5164 4.5177 -4.1456 17 1 9.9528 3.9594 -3.3306 18 6 10.2181 5.5647 -4.7227 19 7 9.6867 6.2446 -5.7158 20 14 11.9184 6.0104 -4.0902 21 1 12.9429 5.2388 -4.8388 22 1 12.1536 7.4637 -4.2844 23 1 12.0104 5.6828 -2.6447 24 6 8.1308 2.7231 -2.7407 25 6 7.4412 1.7476 -2.0497 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.7210 -1.5951 1.2329 30 1 1.6767 -0.2075 -2.1392 31 1 1.6768 -1.7489 -1.2492 32 1 4.4199 -1.5776 0.4321 33 1 5.1905 -1.9629 -1.1254 34 1 3.6493 -2.7341 -0.6800 35 1 6.0115 -0.3941 -1.3474 36 1 4.7650 1.4255 -4.0968 37 1 5.9911 3.1693 -5.3248 38 1 10.1776 6.9775 -6.1194 39 1 9.0755 3.0862 -2.3639 40 1 7.8462 1.3475 -1.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261214022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:14 Heat of formation + Delta-G solvation = -94.881959 kcal Electronic energy + Delta-G solvation = -23120.683967 eV Core-core repulsion = 19514.843132 eV Total energy + Delta-G solvation = -3605.840835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.77323 -40.56273 -38.98105 -38.03364 -36.18756 -35.33027 -34.12775 -32.30233 -31.86654 -29.60563 -28.28771 -27.41991 -26.46020 -23.91521 -23.30459 -22.58083 -21.14441 -19.85124 -19.37490 -18.90184 -18.07094 -17.45808 -16.96110 -16.58536 -16.34394 -16.06723 -15.99703 -15.51015 -15.30079 -14.93319 -14.86084 -14.52246 -14.19913 -13.89886 -13.56452 -13.48211 -13.38544 -13.20667 -13.18116 -12.82697 -12.73459 -12.54273 -12.37549 -12.10961 -11.89617 -11.43710 -11.37490 -11.22632 -10.94812 -10.55981 -9.84250 -9.56915 -8.55188 -8.44190 -6.11365 0.52662 0.58598 1.37487 1.46564 1.55348 1.57647 2.07244 2.20277 2.85192 2.92201 3.18264 3.51548 3.52451 3.84325 4.00968 4.06134 4.13858 4.20292 4.31797 4.48649 4.50338 4.60836 4.66911 4.72281 4.81238 4.85992 4.95320 5.05092 5.14797 5.18575 5.22908 5.31384 5.40254 5.55632 5.60051 5.70225 5.90147 6.04065 6.19005 6.88235 6.92553 7.00137 7.49779 7.81440 8.79457 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035986 B = 0.002769 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.902369 B =10110.467414 C =10350.231285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.090 3.910 3 H 0.059 0.941 4 O -0.571 6.571 5 C 0.101 3.899 6 N -0.619 5.619 7 C 0.073 3.927 8 C 0.692 3.308 9 O -0.621 6.621 10 N -0.664 5.664 11 C 0.083 3.917 12 C -0.073 4.073 13 C -0.187 4.187 14 C 0.106 3.894 15 O -0.232 6.232 16 C -0.411 4.411 17 H 0.106 0.894 18 C -0.026 4.026 19 N -0.924 5.924 20 Si 1.021 2.979 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.250 1.250 24 C -0.217 4.217 25 C -0.084 4.084 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.389 0.611 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.419 0.581 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.272 0.728 39 H 0.133 0.867 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 -21.392 14.294 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.030 3.970 3 H 0.078 0.922 4 O -0.379 6.379 5 C -0.022 4.022 6 N -0.355 5.355 7 C -0.069 4.069 8 C 0.394 3.606 9 O -0.501 6.501 10 N -0.315 5.315 11 C -0.011 4.011 12 C -0.093 4.093 13 C -0.207 4.207 14 C 0.055 3.945 15 O -0.139 6.139 16 C -0.487 4.487 17 H 0.123 0.877 18 C -0.223 4.223 19 N -0.562 5.562 20 Si 0.840 3.160 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.173 1.173 24 C -0.237 4.237 25 C -0.104 4.104 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.238 0.762 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.258 0.742 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.150 0.850 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.022 -19.963 13.727 27.505 hybrid contribution 0.554 0.047 -0.147 0.575 sum -12.468 -19.917 13.580 27.140 Atomic orbital electron populations 1.22356 0.94015 1.04118 1.02822 1.22168 0.94222 0.95701 0.84911 0.92237 1.86615 1.77434 1.30252 1.43561 1.22266 0.77795 1.03389 0.98743 1.46959 1.06938 1.22647 1.58918 1.22051 0.97456 0.89287 0.98099 1.16171 0.81871 0.82846 0.79682 1.90916 1.68324 1.38197 1.52701 1.42307 1.04372 1.30709 1.54084 1.17165 0.94428 0.96323 0.93228 1.20699 0.98961 0.96307 0.93335 1.20232 0.95315 1.02302 1.02813 1.19834 0.92423 0.90044 0.92150 1.83967 1.29679 1.49466 1.50753 1.21857 0.90048 1.17019 1.19820 0.87675 1.26637 1.04704 0.94786 0.96176 1.70207 1.40331 1.21257 1.24421 0.84558 0.74344 0.77838 0.79281 1.18737 1.19914 1.17338 1.21111 1.03282 1.02319 0.96938 1.20777 0.94132 0.95875 0.99609 0.89499 0.92110 0.91600 0.76173 0.90818 0.86020 0.91523 0.90866 0.87776 0.74162 0.85445 0.86936 0.91913 0.84961 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.53 71.98 0.69 -1.28 16 2 C 0.09 1.47 3.86 30.59 0.12 1.59 16 3 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 4 O -0.57 -8.18 12.56 -148.98 -1.87 -10.06 16 5 C 0.10 1.52 5.14 86.38 0.44 1.96 16 6 N -0.62 -11.50 2.80 -864.91 -2.42 -13.92 16 7 C 0.07 0.68 9.66 127.77 1.23 1.91 16 8 C 0.69 19.99 8.01 179.05 1.43 21.43 16 9 O -0.62 -23.81 13.64 -4.02 -0.05 -23.86 16 10 N -0.66 -17.75 5.18 -317.03 -1.64 -19.39 16 11 C 0.08 2.93 6.27 38.15 0.24 3.17 16 12 C -0.07 -2.98 8.65 22.38 0.19 -2.79 16 13 C -0.19 -8.82 9.99 22.38 0.22 -8.60 16 14 C 0.11 5.49 6.65 22.59 0.15 5.64 16 15 O -0.23 -14.31 9.75 -22.87 -0.22 -14.53 16 16 C -0.41 -24.12 9.44 67.91 0.64 -23.48 16 17 H 0.11 5.55 5.29 -2.91 -0.02 5.53 16 18 C -0.03 -1.49 5.49 84.82 0.47 -1.03 16 19 N -0.92 -57.79 13.67 21.61 0.30 -57.49 16 20 Si 1.02 43.05 29.55 68.60 2.03 45.07 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 24 C -0.22 -9.48 9.13 22.38 0.20 -9.27 16 25 C -0.08 -2.91 9.96 22.38 0.22 -2.69 16 26 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.39 1.72 9.05 -74.06 -0.67 1.05 16 30 H 0.07 1.46 7.42 -2.39 -0.02 1.44 16 31 H 0.12 0.77 7.89 -2.39 -0.02 0.75 16 32 H 0.07 0.62 8.01 -2.38 -0.02 0.60 16 33 H 0.07 0.59 6.45 -2.39 -0.02 0.58 16 34 H 0.10 0.34 7.89 -2.39 -0.02 0.32 16 35 H 0.42 7.68 6.63 -92.71 -0.61 7.07 16 36 H 0.13 5.16 6.45 -2.91 -0.02 5.14 16 37 H 0.11 5.31 8.06 -2.91 -0.02 5.29 16 38 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.13 5.68 5.71 -2.91 -0.02 5.67 16 40 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -83.31 338.03 2.17 -81.14 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -0.20 Total: 26.45 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 6.26 Total: -13.42 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.76 Total: -90.80 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -2.15 Total: -48.45 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -83.31 2.17 -81.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261214022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.740 kcal (2) G-P(sol) polarization free energy of solvation -83.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds