Wall clock time and date at job start Tue Mar 31 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36017 * 116.99743 * 2 1 4 4 C 1.35845 * 120.31411 * 0.02562 * 3 2 1 5 5 N 1.35444 * 120.77825 * 180.02562 * 4 3 2 6 6 H 0.96996 * 119.29572 * 180.02562 * 5 4 3 7 7 C 1.36429 * 121.40551 * 0.02562 * 5 4 3 8 8 C 1.48078 * 119.71646 * 179.97438 * 7 5 4 9 9 O 1.21515 * 119.99768 * 179.97438 * 8 7 5 10 10 N 1.34779 * 119.99802 * 359.97438 * 8 7 5 11 11 C 1.46494 * 119.99594 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47054 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47506 * 300.00198 * 12 11 10 14 14 C 1.53008 * 109.46945 * 60.00304 * 12 11 10 15 15 C 1.50703 * 109.47496 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99566 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00430 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99723 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00061 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46960 * 59.99992 * 19 17 15 21 21 H 1.48501 * 109.46870 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47052 * 299.99827 * 19 17 15 23 23 C 1.36176 * 120.56202 * 359.95641 * 7 5 4 24 24 C 1.41575 * 120.31119 * 179.72508 * 3 2 1 25 25 O 1.22267 * 120.65381 * 359.97438 * 24 3 2 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99759 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99815 * 1 2 3 29 29 H 1.07998 * 119.61777 * 0.02562 * 4 3 2 30 30 H 0.96994 * 119.99798 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.47417 * 300.00301 * 11 10 8 32 32 H 1.09005 * 109.47054 * 60.00287 * 11 10 8 33 33 H 1.09003 * 109.46613 * 59.99817 * 13 12 11 34 34 H 1.09000 * 109.47122 * 179.97438 * 13 12 11 35 35 H 1.08997 * 109.46961 * 299.99845 * 13 12 11 36 36 H 1.09002 * 109.46835 * 59.99840 * 14 12 11 37 37 H 1.09000 * 109.47199 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.46777 * 299.99934 * 14 12 11 39 39 H 0.96999 * 120.00231 * 180.02562 * 18 17 15 40 40 H 1.08008 * 120.40294 * 179.97438 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3552 0.0005 5 7 1.9179 3.5670 0.0000 6 1 1.3731 4.3695 0.0008 7 6 3.2773 3.6829 -0.0016 8 6 3.8994 5.0266 -0.0027 9 8 5.1097 5.1358 -0.0036 10 7 3.1233 6.1286 -0.0026 11 6 3.7389 7.4579 -0.0043 12 6 2.6442 8.5268 -0.0045 13 6 1.7744 8.3659 -1.2529 14 6 1.7763 8.3682 1.2456 15 6 3.2773 9.8944 -0.0068 16 1 4.3530 9.9914 -0.0084 17 6 2.4835 11.0216 -0.0069 18 7 1.1736 10.9034 -0.0054 19 14 3.2683 12.7167 -0.0105 20 1 4.1094 12.8702 -1.2247 21 1 2.2058 13.7542 -0.0106 22 1 4.1136 12.8734 1.2003 23 6 4.0668 2.5734 -0.0018 24 6 3.4599 1.2938 0.0059 25 8 4.1430 0.2798 0.0115 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2344 2.2974 0.0014 30 1 2.1573 6.0413 -0.0015 31 1 4.3588 7.5724 0.8849 32 1 4.3568 7.5711 -0.8951 33 1 1.3165 7.3768 -1.2516 34 1 0.9943 9.1272 -1.2528 35 1 2.3927 8.4790 -2.1434 36 1 2.3959 8.4828 2.1350 37 1 0.9967 9.1300 1.2457 38 1 1.3183 7.3790 1.2468 39 1 0.6151 11.6965 -0.0058 40 1 5.1427 2.6681 -0.0035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263841901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:37 Heat of formation + Delta-G solvation = -71.725547 kcal Electronic energy + Delta-G solvation = -23510.011978 eV Core-core repulsion = 19905.175280 eV Total energy + Delta-G solvation = -3604.836698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52614 -39.70315 -38.20693 -37.69182 -36.67182 -33.70258 -31.70866 -31.35788 -30.56815 -27.91579 -26.18443 -25.94701 -25.38021 -23.91846 -23.24521 -20.85573 -19.96179 -19.01654 -18.23131 -17.70598 -16.36829 -16.29967 -16.11521 -15.49312 -15.37267 -15.25717 -14.78232 -14.61151 -14.34591 -14.21625 -13.52416 -13.35859 -13.10355 -12.92722 -12.89846 -12.42262 -11.81554 -11.68732 -11.59624 -11.37640 -10.99746 -10.86248 -10.59499 -10.40094 -10.21781 -9.85836 -9.67723 -9.58178 -9.49078 -8.99639 -8.82315 -8.51470 -7.84406 -6.17028 -4.27597 0.59318 1.00464 2.40284 2.85486 2.95750 3.08295 3.21495 3.26323 3.30576 3.61380 4.17032 4.28109 4.43520 4.55794 4.72868 4.82348 4.87794 5.10524 5.17076 5.34090 5.61109 5.91437 6.00831 6.07756 6.22779 6.37289 6.44967 6.49705 6.55553 6.65482 6.69029 6.79751 6.97328 7.13262 7.34546 7.49192 7.58108 7.81356 7.90407 7.93102 8.08677 8.22764 8.72532 9.39356 10.84537 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031781 B = 0.003179 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.825000 B = 8807.044030 C = 9491.493159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.289 6.289 3 C -0.036 4.036 4 C 0.030 3.970 5 N -0.563 5.563 6 H 0.421 0.579 7 C 0.130 3.870 8 C 0.546 3.454 9 O -0.511 6.511 10 N -0.707 5.707 11 C 0.129 3.871 12 C 0.056 3.944 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.510 4.510 16 H 0.059 0.941 17 C 0.068 3.932 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.217 4.217 24 C 0.401 3.599 25 O -0.501 6.501 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.170 0.830 30 H 0.393 0.607 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.002 0.998 34 H 0.088 0.912 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.088 0.912 38 H 0.002 0.998 39 H 0.262 0.738 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 -13.113 0.004 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.087 4.087 4 C -0.097 4.097 5 N -0.176 5.176 6 H 0.259 0.741 7 C 0.018 3.982 8 C 0.329 3.671 9 O -0.386 6.386 10 N -0.358 5.358 11 C 0.007 3.993 12 C 0.055 3.945 13 C -0.190 4.190 14 C -0.190 4.190 15 C -0.548 4.548 16 H 0.077 0.923 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.244 4.244 24 C 0.291 3.709 25 O -0.385 6.385 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.187 0.813 30 H 0.228 0.772 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.021 0.979 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.107 0.893 38 H 0.021 0.979 39 H 0.072 0.928 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.861 -13.645 0.006 14.851 hybrid contribution -0.876 1.497 0.001 1.734 sum -6.737 -12.148 0.007 13.891 Atomic orbital electron populations 1.23134 0.79205 1.04454 1.00985 1.86277 1.20294 1.24335 1.89142 1.20422 0.94826 0.84625 1.08852 1.21653 0.98802 0.84162 1.05067 1.40774 1.05282 1.08553 1.63018 0.74145 1.20621 0.82688 0.96258 0.98669 1.17950 0.87325 0.82964 0.78910 1.90839 1.12903 1.85726 1.49117 1.46334 1.09787 1.07218 1.72470 1.21935 0.97423 0.78523 1.01394 1.18383 0.90960 0.92251 0.92870 1.21861 1.01296 0.98071 0.97733 1.21863 1.01304 0.98077 0.97727 1.20909 0.93055 0.89411 1.51458 0.92289 1.24868 0.94835 0.99141 0.94524 1.69767 1.03147 1.29312 1.50200 0.86597 0.78917 0.83385 0.78797 1.20194 1.21277 1.20190 1.22456 1.02353 0.90308 1.09313 1.16801 0.86078 0.89823 0.78191 1.90848 1.65742 1.37566 1.44345 0.87955 0.92722 0.92711 0.81320 0.77175 0.91815 0.91820 0.97907 0.89348 0.95135 0.95141 0.89343 0.97897 0.92806 0.81347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.29 -3.48 10.33 -35.62 -0.37 -3.85 16 3 C -0.04 -0.44 6.71 -39.17 -0.26 -0.70 16 4 C 0.03 0.25 10.22 -16.82 -0.17 0.08 16 5 N -0.56 -4.95 5.26 -9.58 -0.05 -5.00 16 6 H 0.42 2.66 7.00 -40.82 -0.29 2.38 16 7 C 0.13 1.61 6.77 -82.53 -0.56 1.06 16 8 C 0.55 8.18 7.80 -12.22 -0.10 8.09 16 9 O -0.51 -9.51 16.27 5.35 0.09 -9.42 16 10 N -0.71 -10.30 4.95 -61.18 -0.30 -10.60 16 11 C 0.13 2.38 4.50 -4.05 -0.02 2.36 16 12 C 0.06 1.15 0.50 -155.65 -0.08 1.08 16 13 C -0.13 -2.62 8.08 37.16 0.30 -2.32 16 14 C -0.13 -2.62 8.08 37.16 0.30 -2.32 16 15 C -0.51 -12.34 8.01 -34.44 -0.28 -12.62 16 16 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 17 C 0.07 1.67 5.15 -17.82 -0.09 1.58 16 18 N -0.89 -22.01 9.35 55.43 0.52 -21.49 16 19 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 C -0.22 -3.07 9.53 -39.03 -0.37 -3.44 16 24 C 0.40 6.20 6.78 -37.02 -0.25 5.95 16 25 O -0.50 -9.63 17.71 -11.15 -0.20 -9.83 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 29 H 0.17 0.73 6.21 -52.49 -0.33 0.40 16 30 H 0.39 4.71 4.37 -40.82 -0.18 4.53 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.00 0.03 6.86 -51.93 -0.36 -0.32 16 34 H 0.09 1.99 6.07 -51.93 -0.32 1.68 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.99 6.07 -51.93 -0.32 1.68 16 38 H 0.00 0.03 6.86 -51.93 -0.36 -0.32 16 39 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 40 H 0.17 2.48 7.58 -52.48 -0.40 2.08 16 LS Contribution 329.78 15.07 4.97 4.97 Total: -1.00 -31.14 329.78 -5.93 -37.07 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.98 Total: 3.64 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.58 Total: -0.11 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.17 Total: -37.09 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.48 Total: -23.10 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.14 -5.93 -37.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263841901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.654 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds