Wall clock time and date at job start Tue Mar 31 2020 06:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36017 * 116.99743 * 2 1 4 4 C 1.35845 * 120.31411 * 0.02562 * 3 2 1 5 5 N 1.35444 * 120.77825 * 180.02562 * 4 3 2 6 6 H 0.96996 * 119.29572 * 180.02562 * 5 4 3 7 7 C 1.36429 * 121.40551 * 0.02562 * 5 4 3 8 8 C 1.48078 * 119.71646 * 179.97438 * 7 5 4 9 9 O 1.21515 * 119.99768 * 179.97438 * 8 7 5 10 10 N 1.34779 * 119.99802 * 359.97438 * 8 7 5 11 11 C 1.46494 * 119.99594 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47054 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47506 * 300.00198 * 12 11 10 14 14 C 1.53008 * 109.46945 * 60.00304 * 12 11 10 15 15 C 1.50703 * 109.47496 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99566 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00430 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99723 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00061 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46960 * 59.99992 * 19 17 15 21 21 H 1.48501 * 109.46870 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47052 * 299.99827 * 19 17 15 23 23 C 1.36176 * 120.56202 * 359.95641 * 7 5 4 24 24 C 1.41575 * 120.31119 * 179.72508 * 3 2 1 25 25 O 1.22267 * 120.65381 * 359.97438 * 24 3 2 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99759 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99815 * 1 2 3 29 29 H 1.07998 * 119.61777 * 0.02562 * 4 3 2 30 30 H 0.96994 * 119.99798 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.47417 * 300.00301 * 11 10 8 32 32 H 1.09005 * 109.47054 * 60.00287 * 11 10 8 33 33 H 1.09003 * 109.46613 * 59.99817 * 13 12 11 34 34 H 1.09000 * 109.47122 * 179.97438 * 13 12 11 35 35 H 1.08997 * 109.46961 * 299.99845 * 13 12 11 36 36 H 1.09002 * 109.46835 * 59.99840 * 14 12 11 37 37 H 1.09000 * 109.47199 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.46777 * 299.99934 * 14 12 11 39 39 H 0.96999 * 120.00231 * 180.02562 * 18 17 15 40 40 H 1.08008 * 120.40294 * 179.97438 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3552 0.0005 5 7 1.9179 3.5670 0.0000 6 1 1.3731 4.3695 0.0008 7 6 3.2773 3.6829 -0.0016 8 6 3.8994 5.0266 -0.0027 9 8 5.1097 5.1358 -0.0036 10 7 3.1233 6.1286 -0.0026 11 6 3.7389 7.4579 -0.0043 12 6 2.6442 8.5268 -0.0045 13 6 1.7744 8.3659 -1.2529 14 6 1.7763 8.3682 1.2456 15 6 3.2773 9.8944 -0.0068 16 1 4.3530 9.9914 -0.0084 17 6 2.4835 11.0216 -0.0069 18 7 1.1736 10.9034 -0.0054 19 14 3.2683 12.7167 -0.0105 20 1 4.1094 12.8702 -1.2247 21 1 2.2058 13.7542 -0.0106 22 1 4.1136 12.8734 1.2003 23 6 4.0668 2.5734 -0.0018 24 6 3.4599 1.2938 0.0059 25 8 4.1430 0.2798 0.0115 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2344 2.2974 0.0014 30 1 2.1573 6.0413 -0.0015 31 1 4.3588 7.5724 0.8849 32 1 4.3568 7.5711 -0.8951 33 1 1.3165 7.3768 -1.2516 34 1 0.9943 9.1272 -1.2528 35 1 2.3927 8.4790 -2.1434 36 1 2.3959 8.4828 2.1350 37 1 0.9967 9.1300 1.2457 38 1 1.3183 7.3790 1.2468 39 1 0.6151 11.6965 -0.0058 40 1 5.1427 2.6681 -0.0035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263841901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:36 Heat of formation + Delta-G solvation = -93.231663 kcal Electronic energy + Delta-G solvation = -23510.944553 eV Core-core repulsion = 19905.175280 eV Total energy + Delta-G solvation = -3605.769273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.53716 -40.88017 -39.11060 -38.79083 -38.21523 -35.23658 -32.97938 -32.71993 -31.66498 -28.49847 -27.59826 -27.53871 -27.07750 -25.13906 -24.15366 -22.09313 -21.03395 -20.47948 -19.31216 -18.67192 -17.81047 -17.33787 -17.17217 -16.83180 -16.70920 -16.50667 -16.10251 -15.59341 -15.35245 -15.23227 -14.81404 -14.68941 -14.65718 -14.15960 -14.02250 -13.81864 -13.20289 -13.09225 -12.68740 -12.63578 -12.38045 -12.26439 -12.23304 -12.13946 -11.62294 -11.48236 -11.20008 -10.74724 -10.69052 -10.57348 -10.38973 -10.13686 -8.78887 -8.02503 -6.16877 -0.52114 0.12850 1.44763 1.46823 1.48311 1.52700 1.65175 1.80146 2.31743 2.47193 2.55824 3.22464 3.36705 3.54116 3.65253 3.82418 4.34735 4.36845 4.44168 4.49302 4.50266 4.60688 4.71339 4.83899 4.94635 5.02140 5.05293 5.06128 5.18470 5.21119 5.40099 5.52333 5.69698 5.69744 5.75401 6.19594 6.20743 6.26277 6.33990 6.44773 6.84307 6.89653 6.91385 7.51139 8.95759 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031781 B = 0.003179 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.825000 B = 8807.044030 C = 9491.493159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.323 6.323 3 C -0.060 4.060 4 C 0.075 3.925 5 N -0.535 5.535 6 H 0.440 0.560 7 C 0.148 3.852 8 C 0.553 3.447 9 O -0.549 6.549 10 N -0.693 5.693 11 C 0.143 3.857 12 C 0.051 3.949 13 C -0.125 4.125 14 C -0.125 4.125 15 C -0.530 4.530 16 H 0.045 0.955 17 C 0.033 3.967 18 N -0.896 5.896 19 Si 0.938 3.062 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.279 1.279 23 C -0.231 4.231 24 C 0.380 3.620 25 O -0.568 6.568 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.227 0.773 30 H 0.409 0.591 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.260 0.740 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 -13.199 0.002 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.236 6.236 3 C -0.110 4.110 4 C -0.054 4.054 5 N -0.148 5.148 6 H 0.282 0.718 7 C 0.033 3.967 8 C 0.337 3.663 9 O -0.426 6.426 10 N -0.345 5.345 11 C 0.021 3.979 12 C 0.051 3.949 13 C -0.182 4.182 14 C -0.182 4.182 15 C -0.569 4.569 16 H 0.063 0.937 17 C -0.167 4.167 18 N -0.534 5.534 19 Si 0.766 3.234 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.205 1.205 23 C -0.259 4.259 24 C 0.276 3.724 25 O -0.458 6.458 26 H 0.130 0.870 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.243 0.757 30 H 0.248 0.752 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.995 -13.685 0.004 16.377 hybrid contribution -0.025 1.586 0.001 1.586 sum -9.020 -12.100 0.005 15.092 Atomic orbital electron populations 1.23523 0.76231 1.06090 1.03076 1.86238 1.23398 1.24439 1.89496 1.20126 0.93575 0.86313 1.10992 1.22305 1.00691 0.82152 1.00274 1.40892 1.03980 1.09983 1.59963 0.71824 1.20007 0.84077 0.93934 0.98649 1.18118 0.86778 0.83600 0.77789 1.90838 1.14865 1.86328 1.50558 1.46000 1.10501 1.05752 1.72224 1.21497 0.96545 0.79704 1.00203 1.18375 0.91569 0.91166 0.93818 1.21716 1.00217 0.99655 0.96648 1.21718 1.00225 0.99660 0.96641 1.21256 0.92680 0.91662 1.51288 0.93674 1.25346 0.95333 1.01271 0.94790 1.69863 1.03457 1.29520 1.50567 0.85927 0.78185 0.81001 0.78333 1.20468 1.21052 1.20456 1.22274 1.02033 0.90848 1.10702 1.17238 0.87993 0.89275 0.77875 1.90805 1.67231 1.39053 1.48701 0.87001 0.90434 0.90419 0.75665 0.75238 0.93162 0.93167 0.93691 0.91882 0.96227 0.96233 0.91878 0.93680 0.93050 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -7.21 10.33 -78.61 -0.81 -8.02 16 3 C -0.06 -1.34 6.71 22.54 0.15 -1.19 16 4 C 0.07 0.85 10.22 83.58 0.85 1.71 16 5 N -0.54 -6.74 5.26 -184.21 -0.97 -7.71 16 6 H 0.44 2.61 7.00 -92.71 -0.65 1.96 16 7 C 0.15 3.32 6.77 40.56 0.27 3.59 16 8 C 0.55 15.52 7.80 86.85 0.68 16.20 16 9 O -0.55 -20.32 16.27 -3.76 -0.06 -20.39 16 10 N -0.69 -18.03 4.95 -465.76 -2.31 -20.34 16 11 C 0.14 5.09 4.50 86.38 0.39 5.48 16 12 C 0.05 2.03 0.50 -52.92 -0.03 2.01 16 13 C -0.12 -4.64 8.08 71.98 0.58 -4.06 16 14 C -0.12 -4.64 8.08 71.98 0.58 -4.06 16 15 C -0.53 -25.55 8.01 25.60 0.21 -25.35 16 16 H 0.04 2.24 7.74 -2.91 -0.02 2.21 16 17 C 0.03 1.60 5.15 84.65 0.44 2.04 16 18 N -0.90 -43.92 9.35 21.45 0.20 -43.72 16 19 Si 0.94 40.14 29.54 68.60 2.03 42.16 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 C -0.23 -6.60 9.53 22.62 0.22 -6.38 16 24 C 0.38 12.01 6.78 23.93 0.16 12.17 16 25 O -0.57 -23.38 17.71 8.94 0.16 -23.22 16 26 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.31 7.66 -2.38 -0.02 0.29 16 28 H 0.08 0.31 7.66 -2.39 -0.02 0.29 16 29 H 0.23 0.14 6.21 -2.91 -0.02 0.12 16 30 H 0.41 7.73 4.37 -92.71 -0.41 7.32 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 33 H 0.04 1.25 6.86 -2.39 -0.02 1.23 16 34 H 0.06 2.72 6.07 -2.39 -0.01 2.70 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 2.72 6.07 -2.39 -0.01 2.71 16 38 H 0.04 1.25 6.86 -2.39 -0.02 1.23 16 39 H 0.26 12.45 8.31 -92.71 -0.77 11.68 16 40 H 0.15 4.75 7.58 -2.91 -0.02 4.73 16 Total: -1.00 -73.18 329.78 3.89 -69.30 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.04 Total: 8.62 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.61 Total: 3.31 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -3.07 Total: -71.76 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.71 Total: -51.63 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.16 kcal Total: -73.18 3.89 -69.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263841901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.936 kcal (2) G-P(sol) polarization free energy of solvation -73.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds