Wall clock time and date at job start Tue Mar 31 2020 06:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47105 * 2 1 4 4 C 1.52998 * 109.47080 * 240.00542 * 2 1 3 5 5 O 1.42902 * 109.47230 * 59.99738 * 4 2 1 6 6 N 1.46499 * 109.47320 * 120.00130 * 2 1 3 7 7 C 1.34771 * 120.00089 * 300.00107 * 6 2 1 8 8 O 1.21589 * 119.99944 * 359.97438 * 7 6 2 9 9 N 1.34776 * 119.99799 * 180.02562 * 7 6 2 10 10 C 1.40030 * 119.99945 * 175.49576 * 9 7 6 11 11 C 1.38915 * 120.00051 * 215.12591 * 10 9 7 12 12 C 1.38007 * 120.00044 * 180.02562 * 11 10 9 13 13 C 1.38902 * 119.99859 * 0.02562 * 12 11 10 14 14 O 1.35783 * 119.99859 * 179.97438 * 13 12 11 15 15 C 1.34812 * 116.99955 * 5.34819 * 14 13 12 16 16 H 1.08007 * 120.00218 * 354.95840 * 15 14 13 17 17 C 1.38628 * 120.00199 * 174.96182 * 15 14 13 18 18 N 1.31576 * 119.99901 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00212 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46814 * 60.00255 * 19 17 15 21 21 H 1.48497 * 109.47213 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47066 * 300.00388 * 19 17 15 23 23 C 1.38903 * 120.00333 * 0.24029 * 13 12 11 24 24 C 1.38012 * 119.99956 * 359.48398 * 23 13 12 25 25 H 1.09001 * 109.46712 * 299.99863 * 1 2 3 26 26 H 1.08997 * 109.47156 * 59.99388 * 1 2 3 27 27 H 1.08993 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47568 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47166 * 300.00609 * 3 2 1 30 30 H 1.09002 * 109.46734 * 60.00253 * 3 2 1 31 31 H 1.09003 * 109.47384 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46959 * 300.00005 * 4 2 1 33 33 H 0.96703 * 113.99803 * 180.02562 * 5 4 2 34 34 H 0.97006 * 119.99795 * 120.00358 * 6 2 1 35 35 H 0.97000 * 120.00039 * 355.49040 * 9 7 6 36 36 H 1.08001 * 119.99912 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.99960 * 180.02562 * 12 11 10 38 38 H 0.97003 * 119.99956 * 179.97438 * 18 17 15 39 39 H 1.08006 * 119.99854 * 179.72641 * 23 13 12 40 40 H 1.08006 * 119.99889 * 180.23465 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.5636 -0.0474 -2.4160 6 7 2.0184 -0.6906 1.1961 7 6 1.6928 -0.2302 2.4202 8 8 0.9942 0.7586 2.5318 9 7 2.1426 -0.8653 3.5206 10 6 1.8838 -0.3345 4.7903 11 6 2.8285 -0.4595 5.8011 12 6 2.5733 0.0632 7.0526 13 6 1.3716 0.7138 7.3016 14 8 1.1203 1.2277 8.5331 15 6 2.1200 1.1708 9.4356 16 1 3.0393 0.6589 9.1918 17 6 1.9683 1.7695 10.6768 18 7 0.8487 2.3935 10.9737 19 14 3.3534 1.6901 11.9277 20 1 4.5666 2.3350 11.3643 21 1 2.9443 2.4021 13.1650 22 1 3.6505 0.2709 12.2478 23 6 0.4247 0.8340 6.2925 24 6 0.6822 0.3163 5.0393 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2496 32 1 1.6766 -1.7488 -1.2494 33 1 1.8487 -0.4511 -3.2472 34 1 2.5761 -1.4793 1.1071 35 1 2.6454 -1.6902 3.4330 36 1 3.7623 -0.9665 5.6078 37 1 3.3079 -0.0336 7.8383 38 1 0.7423 2.8121 11.8423 39 1 -0.5115 1.3361 6.4874 40 1 -0.0525 0.4131 4.2536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319025542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:07 Heat of formation + Delta-G solvation = -70.898083 kcal Electronic energy + Delta-G solvation = -23143.409604 eV Core-core repulsion = 19538.608788 eV Total energy + Delta-G solvation = -3604.800816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59269 -38.98145 -38.00583 -36.58356 -35.19037 -34.00212 -32.20784 -31.25581 -30.15763 -27.59999 -27.28569 -26.67146 -25.28762 -22.46556 -22.00238 -20.60178 -19.81561 -18.58083 -17.95810 -17.74785 -17.20764 -16.38102 -15.49180 -15.12230 -14.97349 -14.82551 -14.52550 -14.24673 -13.91387 -13.51937 -13.50723 -13.04537 -12.98399 -12.77835 -12.47250 -12.13530 -11.94616 -11.72563 -11.52317 -11.49545 -11.27372 -10.99943 -10.96535 -10.68798 -10.47452 -10.44084 -9.70776 -9.55433 -9.18655 -9.17511 -8.65540 -8.14861 -6.86868 -6.40476 -3.98720 2.20489 2.28362 2.59121 3.14832 3.15859 3.19254 3.35849 3.91530 4.00146 4.22190 4.57794 4.61893 4.67045 4.82441 5.11515 5.13508 5.31851 5.38678 5.58731 5.65997 5.78439 5.80846 5.84363 5.87938 6.17591 6.21264 6.25925 6.34660 6.42117 6.50847 6.73286 6.89231 6.97253 7.14687 7.17900 7.27593 7.31156 7.47841 7.85479 8.03783 8.09078 8.72512 9.04777 9.76108 10.77563 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.045143 B = 0.002676 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.097497 B =10459.693291 C =10688.074212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.194 3.806 3 C -0.160 4.160 4 C 0.078 3.922 5 O -0.561 6.561 6 N -0.743 5.743 7 C 0.705 3.295 8 O -0.567 6.567 9 N -0.676 5.676 10 C 0.054 3.946 11 C -0.093 4.093 12 C -0.220 4.220 13 C 0.146 3.854 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.178 4.178 24 C -0.066 4.066 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.382 0.618 34 H 0.391 0.609 35 H 0.396 0.604 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 -9.487 -22.249 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 C -0.218 4.218 4 C -0.001 4.001 5 O -0.366 6.366 6 N -0.401 5.401 7 C 0.406 3.594 8 O -0.443 6.443 9 N -0.323 5.323 10 C -0.039 4.039 11 C -0.113 4.113 12 C -0.240 4.240 13 C 0.092 3.908 14 O -0.081 6.081 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.198 4.198 24 C -0.087 4.087 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.229 0.771 34 H 0.224 0.776 35 H 0.230 0.770 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.832 -7.920 -21.433 23.169 hybrid contribution 1.732 -1.363 0.094 2.206 sum 5.564 -9.283 -21.339 23.927 Atomic orbital electron populations 1.22177 0.93594 1.01933 1.04014 1.19922 0.94983 0.92556 0.81800 1.22181 1.00363 0.95192 1.04019 1.22211 0.97399 0.94712 0.85736 1.86462 1.77380 1.57033 1.15697 1.45113 1.57301 1.33392 1.04257 1.15835 0.80780 0.82876 0.79924 1.90874 1.41316 1.27046 1.85110 1.42330 1.59117 1.27106 1.03746 1.17031 0.95880 1.07542 0.83422 1.20449 0.96772 1.01149 0.92948 1.20944 0.99505 1.06086 0.97447 1.19417 0.92826 0.92069 0.86504 1.83993 1.38852 1.69088 1.16195 1.21253 0.95521 1.36466 0.93540 0.89185 1.25277 0.98067 0.95808 0.97415 1.70041 1.24557 1.32766 1.22457 0.85792 0.79767 0.78748 0.79167 1.19554 1.20322 1.19559 1.20161 1.00445 1.07614 0.91620 1.20773 0.95192 0.96995 0.95695 0.89910 0.91287 0.93247 0.93250 0.91308 0.89853 0.93161 0.93169 0.77084 0.77554 0.76983 0.87321 0.85190 0.92012 0.86195 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.26 37.16 0.31 -1.50 16 2 C 0.19 1.96 0.89 -131.82 -0.12 1.84 16 3 C -0.16 -1.87 8.26 37.16 0.31 -1.57 16 4 C 0.08 0.53 6.03 37.16 0.22 0.76 16 5 O -0.56 -3.97 12.31 -35.23 -0.43 -4.40 16 6 N -0.74 -7.41 5.11 -52.42 -0.27 -7.68 16 7 C 0.70 10.01 7.83 -86.92 -0.68 9.33 16 8 O -0.57 -10.21 9.99 5.29 0.05 -10.15 16 9 N -0.68 -9.21 5.35 -14.18 -0.08 -9.29 16 10 C 0.05 0.97 6.30 -83.61 -0.53 0.44 16 11 C -0.09 -1.67 9.96 -39.42 -0.39 -2.07 16 12 C -0.22 -4.76 9.16 -39.42 -0.36 -5.12 16 13 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 14 O -0.18 -5.14 9.76 0.00 0.00 -5.14 16 15 C -0.39 -11.01 9.48 30.88 0.29 -10.71 16 16 H 0.09 2.32 5.20 -52.48 -0.27 2.04 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.60 13.67 55.48 0.76 -24.85 16 19 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 C -0.18 -4.00 9.98 -39.42 -0.39 -4.39 16 24 C -0.07 -1.33 8.69 -39.42 -0.34 -1.67 16 25 H 0.08 1.18 6.16 -51.93 -0.32 0.86 16 26 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 30 H 0.08 1.24 6.16 -51.93 -0.32 0.92 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.38 0.89 9.12 45.56 0.42 1.31 16 34 H 0.39 2.56 8.49 -40.82 -0.35 2.22 16 35 H 0.40 3.87 8.84 -40.82 -0.36 3.50 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.13 2.78 5.63 -52.49 -0.30 2.48 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.12 2.62 8.06 -52.48 -0.42 2.19 16 40 H 0.13 2.58 6.23 -52.48 -0.33 2.25 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -34.56 332.21 -6.32 -40.88 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.30 Total: 10.39 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.04 Total: -10.36 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.41 Total: -41.81 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.38 Total: -19.70 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.56 -6.32 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319025542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.019 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds