Wall clock time and date at job start Tue Mar 31 2020 06:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47105 * 2 1 4 4 C 1.52998 * 109.47080 * 240.00542 * 2 1 3 5 5 O 1.42902 * 109.47230 * 59.99738 * 4 2 1 6 6 N 1.46499 * 109.47320 * 120.00130 * 2 1 3 7 7 C 1.34771 * 120.00089 * 300.00107 * 6 2 1 8 8 O 1.21589 * 119.99944 * 359.97438 * 7 6 2 9 9 N 1.34776 * 119.99799 * 180.02562 * 7 6 2 10 10 C 1.40030 * 119.99945 * 175.49576 * 9 7 6 11 11 C 1.38915 * 120.00051 * 215.12591 * 10 9 7 12 12 C 1.38007 * 120.00044 * 180.02562 * 11 10 9 13 13 C 1.38902 * 119.99859 * 0.02562 * 12 11 10 14 14 O 1.35783 * 119.99859 * 179.97438 * 13 12 11 15 15 C 1.34812 * 116.99955 * 5.34819 * 14 13 12 16 16 H 1.08007 * 120.00218 * 354.95840 * 15 14 13 17 17 C 1.38628 * 120.00199 * 174.96182 * 15 14 13 18 18 N 1.31576 * 119.99901 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00212 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46814 * 60.00255 * 19 17 15 21 21 H 1.48497 * 109.47213 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47066 * 300.00388 * 19 17 15 23 23 C 1.38903 * 120.00333 * 0.24029 * 13 12 11 24 24 C 1.38012 * 119.99956 * 359.48398 * 23 13 12 25 25 H 1.09001 * 109.46712 * 299.99863 * 1 2 3 26 26 H 1.08997 * 109.47156 * 59.99388 * 1 2 3 27 27 H 1.08993 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47568 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47166 * 300.00609 * 3 2 1 30 30 H 1.09002 * 109.46734 * 60.00253 * 3 2 1 31 31 H 1.09003 * 109.47384 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46959 * 300.00005 * 4 2 1 33 33 H 0.96703 * 113.99803 * 180.02562 * 5 4 2 34 34 H 0.97006 * 119.99795 * 120.00358 * 6 2 1 35 35 H 0.97000 * 120.00039 * 355.49040 * 9 7 6 36 36 H 1.08001 * 119.99912 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.99960 * 180.02562 * 12 11 10 38 38 H 0.97003 * 119.99956 * 179.97438 * 18 17 15 39 39 H 1.08006 * 119.99854 * 179.72641 * 23 13 12 40 40 H 1.08006 * 119.99889 * 180.23465 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.5636 -0.0474 -2.4160 6 7 2.0184 -0.6906 1.1961 7 6 1.6928 -0.2302 2.4202 8 8 0.9942 0.7586 2.5318 9 7 2.1426 -0.8653 3.5206 10 6 1.8838 -0.3345 4.7903 11 6 2.8285 -0.4595 5.8011 12 6 2.5733 0.0632 7.0526 13 6 1.3716 0.7138 7.3016 14 8 1.1203 1.2277 8.5331 15 6 2.1200 1.1708 9.4356 16 1 3.0393 0.6589 9.1918 17 6 1.9683 1.7695 10.6768 18 7 0.8487 2.3935 10.9737 19 14 3.3534 1.6901 11.9277 20 1 4.5666 2.3350 11.3643 21 1 2.9443 2.4021 13.1650 22 1 3.6505 0.2709 12.2478 23 6 0.4247 0.8340 6.2925 24 6 0.6822 0.3163 5.0393 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2496 32 1 1.6766 -1.7488 -1.2494 33 1 1.8487 -0.4511 -3.2472 34 1 2.5761 -1.4793 1.1071 35 1 2.6454 -1.6902 3.4330 36 1 3.7623 -0.9665 5.6078 37 1 3.3079 -0.0336 7.8383 38 1 0.7423 2.8121 11.8423 39 1 -0.5115 1.3361 6.4874 40 1 -0.0525 0.4131 4.2536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319025542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:06 Heat of formation + Delta-G solvation = -99.077955 kcal Electronic energy + Delta-G solvation = -23144.631575 eV Core-core repulsion = 19538.608788 eV Total energy + Delta-G solvation = -3606.022787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77676 -40.59574 -39.07935 -37.94864 -36.09999 -35.40705 -34.16428 -32.33059 -31.82902 -29.17877 -28.21466 -27.38720 -27.20518 -23.98755 -23.48604 -22.03029 -20.77237 -20.05148 -19.30031 -18.91805 -18.48669 -17.89213 -16.51974 -16.34697 -16.13591 -15.92484 -15.89527 -15.71272 -15.44506 -15.08268 -14.82798 -14.53280 -14.20570 -13.85236 -13.69933 -13.56352 -13.26854 -13.19047 -13.04435 -12.80852 -12.61238 -12.42436 -12.21354 -12.14116 -11.76886 -11.32156 -11.05686 -10.92910 -10.80686 -10.49060 -10.12119 -9.80554 -8.54799 -8.43015 -6.10625 0.55932 0.62420 1.37522 1.48145 1.54051 1.55282 2.14630 2.21178 2.86773 3.11361 3.19090 3.50158 3.55998 3.90914 4.04594 4.09174 4.10841 4.17815 4.51743 4.53557 4.62101 4.65793 4.73849 4.83139 4.84812 4.94767 4.96506 5.08436 5.23965 5.31487 5.36157 5.38202 5.49625 5.58560 5.64037 5.73369 6.03990 6.07412 6.23664 6.93952 7.00923 7.11554 7.61041 7.82839 8.80144 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.045143 B = 0.002676 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.097497 B =10459.693291 C =10688.074212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.188 3.812 3 C -0.155 4.155 4 C 0.087 3.913 5 O -0.582 6.582 6 N -0.719 5.719 7 C 0.701 3.299 8 O -0.607 6.607 9 N -0.663 5.663 10 C 0.084 3.916 11 C -0.080 4.080 12 C -0.220 4.220 13 C 0.105 3.895 14 O -0.233 6.233 15 C -0.412 4.412 16 H 0.107 0.893 17 C -0.027 4.027 18 N -0.924 5.924 19 Si 1.021 2.979 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.254 1.254 23 C -0.191 4.191 24 C -0.072 4.072 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.403 0.597 34 H 0.414 0.586 35 H 0.422 0.578 36 H 0.159 0.841 37 H 0.132 0.868 38 H 0.272 0.728 39 H 0.109 0.891 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -12.168 -24.893 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.102 3.898 3 C -0.213 4.213 4 C 0.008 3.992 5 O -0.390 6.390 6 N -0.377 5.377 7 C 0.401 3.599 8 O -0.486 6.486 9 N -0.313 5.313 10 C -0.010 4.010 11 C -0.101 4.101 12 C -0.240 4.240 13 C 0.055 3.945 14 O -0.140 6.140 15 C -0.488 4.488 16 H 0.124 0.876 17 C -0.224 4.224 18 N -0.562 5.562 19 Si 0.840 3.160 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.178 1.178 23 C -0.211 4.211 24 C -0.093 4.093 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.254 0.746 34 H 0.251 0.749 35 H 0.260 0.740 36 H 0.177 0.823 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.975 -10.695 -24.199 27.361 hybrid contribution 0.722 -0.617 0.480 1.064 sum 7.696 -11.311 -23.719 27.382 Atomic orbital electron populations 1.22098 0.94812 1.02068 1.02328 1.20024 0.94152 0.92245 0.83367 1.22102 1.00781 0.96209 1.02251 1.22104 0.98394 0.94800 0.83904 1.86408 1.77858 1.57900 1.16841 1.44832 1.56574 1.33623 1.02687 1.16039 0.80345 0.82485 0.80996 1.90887 1.42952 1.28928 1.85797 1.42111 1.59222 1.27969 1.01984 1.17108 0.94345 1.04495 0.85093 1.20807 0.98312 0.99907 0.91046 1.21110 0.98208 1.05538 0.99108 1.19864 0.94900 0.93766 0.85988 1.83960 1.40212 1.71816 1.18003 1.21836 0.96119 1.36860 0.94033 0.87606 1.26644 1.01062 0.95108 0.99551 1.70208 1.27483 1.35199 1.23359 0.84619 0.76044 0.79584 0.75781 1.18147 1.19982 1.17811 1.20261 1.00084 1.08245 0.92488 1.20859 0.96515 0.97388 0.94507 0.93359 0.91197 0.92130 0.92347 0.91164 0.93520 0.91156 0.91013 0.74580 0.74896 0.74019 0.82349 0.85011 0.91948 0.87315 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.26 71.98 0.59 -2.72 16 2 C 0.19 3.31 0.89 3.61 0.00 3.32 16 3 C -0.16 -3.44 8.26 71.98 0.59 -2.85 16 4 C 0.09 0.81 6.03 71.98 0.43 1.24 16 5 O -0.58 -6.24 12.31 -148.98 -1.83 -8.07 16 6 N -0.72 -11.78 5.11 -438.01 -2.24 -14.02 16 7 C 0.70 18.15 7.83 179.06 1.40 19.55 16 8 O -0.61 -21.54 9.99 -4.00 -0.04 -21.58 16 9 N -0.66 -15.59 5.35 -317.05 -1.69 -17.29 16 10 C 0.08 2.80 6.30 38.15 0.24 3.04 16 11 C -0.08 -2.65 9.96 22.38 0.22 -2.43 16 12 C -0.22 -9.38 9.16 22.37 0.20 -9.17 16 13 C 0.11 5.40 6.65 22.59 0.15 5.55 16 14 O -0.23 -14.34 9.76 -22.93 -0.22 -14.56 16 15 C -0.41 -24.10 9.48 67.91 0.64 -23.46 16 16 H 0.11 5.54 5.20 -2.91 -0.02 5.52 16 17 C -0.03 -1.53 5.49 84.82 0.47 -1.06 16 18 N -0.92 -57.78 13.67 21.61 0.30 -57.49 16 19 Si 1.02 42.90 29.55 68.60 2.03 44.92 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 23 C -0.19 -8.95 9.98 22.38 0.22 -8.73 16 24 C -0.07 -2.90 8.69 22.38 0.19 -2.70 16 25 H 0.05 1.38 6.16 -2.39 -0.01 1.37 16 26 H 0.07 1.46 7.68 -2.39 -0.02 1.44 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.51 7.68 -2.39 -0.02 1.49 16 30 H 0.05 1.39 6.16 -2.39 -0.01 1.38 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.40 0.38 9.12 -74.06 -0.68 -0.29 16 34 H 0.41 3.30 8.49 -92.70 -0.79 2.51 16 35 H 0.42 5.96 8.84 -92.71 -0.82 5.14 16 36 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.13 5.52 5.63 -2.91 -0.02 5.50 16 38 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 39 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 40 H 0.13 5.29 6.23 -2.91 -0.02 5.27 16 Total: -1.00 -82.10 332.21 0.49 -81.61 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -1.17 Total: 26.90 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 5.37 Total: -20.42 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -3.64 Total: -88.80 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -2.10 Total: -44.21 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -82.10 0.49 -81.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319025542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.472 kcal (2) G-P(sol) polarization free energy of solvation -82.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds