Wall clock time and date at job start Tue Mar 31 2020 07:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46666 * 2 1 4 4 C 1.52997 * 109.47050 * 240.00272 * 2 1 3 5 5 C 1.50708 * 109.47127 * 175.00022 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 N 1.46499 * 109.47391 * 119.99461 * 2 1 3 11 11 C 1.34769 * 120.00448 * 275.00355 * 10 2 1 12 12 O 1.21346 * 119.99865 * 0.02562 * 11 10 2 13 13 C 1.49457 * 120.00298 * 179.97438 * 11 10 2 14 14 O 1.21345 * 119.99749 * 359.97438 * 13 11 10 15 15 N 1.34768 * 119.99884 * 179.97438 * 13 11 10 16 16 C 1.46505 * 119.99872 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.47079 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46876 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99861 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99968 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99908 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47195 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47051 * 119.99531 * 22 20 18 25 25 H 1.48502 * 109.46976 * 239.99482 * 22 20 18 26 26 H 1.09005 * 109.46666 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47404 * 299.99567 * 1 2 3 28 28 H 1.09003 * 109.47621 * 60.00459 * 1 2 3 29 29 H 1.08998 * 109.47369 * 54.99474 * 4 2 1 30 30 H 1.09005 * 109.46999 * 294.99290 * 4 2 1 31 31 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 32 32 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 33 33 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 34 34 H 0.97003 * 119.99551 * 95.00447 * 10 2 1 35 35 H 0.97003 * 120.00414 * 0.02562 * 15 13 11 36 36 H 1.08996 * 109.47461 * 300.00345 * 16 15 13 37 37 H 1.08999 * 109.46439 * 60.00416 * 16 15 13 38 38 H 1.08996 * 109.47321 * 300.00511 * 17 16 15 39 39 H 1.08999 * 109.47080 * 60.00889 * 17 16 15 40 40 H 0.96998 * 119.99619 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 6 4.4156 -1.4849 -0.7752 7 6 5.7105 -1.0013 -1.0723 8 6 5.5507 0.1351 -1.7740 9 8 4.2350 0.3644 -1.9165 10 7 2.0184 -0.6905 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8580 1.1591 2.4117 13 6 2.6448 -0.7228 3.5776 14 8 2.9326 -1.9003 3.5233 15 7 2.7740 -0.0502 4.7383 16 6 3.2613 -0.7410 5.9348 17 6 3.3142 0.2425 7.1056 18 6 3.8161 -0.4680 8.3362 19 1 4.0722 -1.5161 8.2879 20 6 3.9484 0.2200 9.5237 21 7 3.6370 1.4965 9.5824 22 14 4.5712 -0.6605 11.0489 23 1 4.8500 -2.0817 10.7208 24 1 5.8179 -0.0076 11.5229 25 1 3.5402 -0.5922 12.1155 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6053 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2056 31 1 4.1742 -2.3809 -0.2226 32 1 6.6481 -1.4592 -0.7936 33 1 6.3455 0.7574 -2.1578 34 1 2.2491 -1.6317 1.1526 35 1 2.5436 0.8910 4.7818 36 1 2.5879 -1.5623 6.1798 37 1 4.2602 -1.1342 5.7457 38 1 3.9878 1.0635 6.8603 39 1 2.3155 0.6361 7.2949 40 1 3.7304 1.9805 10.4177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321588886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:12 Heat of formation + Delta-G solvation = -72.086286 kcal Electronic energy + Delta-G solvation = -22878.278553 eV Core-core repulsion = 19273.426213 eV Total energy + Delta-G solvation = -3604.852341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.76543 -40.46269 -38.47654 -36.59831 -35.05372 -33.18239 -32.88960 -32.20964 -30.25176 -29.77849 -26.57183 -25.77065 -23.92193 -21.99974 -21.67009 -20.97395 -20.64333 -20.16479 -18.31322 -17.55296 -16.94946 -16.42651 -16.20110 -15.73816 -15.54977 -15.05585 -14.72418 -14.47687 -14.18993 -13.95699 -13.48821 -13.35272 -13.04471 -12.99985 -12.87767 -12.57175 -12.40694 -12.32078 -11.88504 -11.50354 -11.37106 -11.21945 -11.07575 -10.64984 -10.40332 -10.09188 -9.78728 -9.43459 -9.39047 -9.17540 -8.68720 -8.65746 -8.41896 -6.10243 -4.13821 1.51191 1.64069 2.43434 2.53816 2.76524 3.27903 3.35515 3.40096 3.45507 3.87895 4.27848 4.39473 4.42371 4.68470 4.77605 4.83918 4.92315 4.97534 5.13989 5.24396 5.26722 5.38300 5.63351 5.64008 5.73874 5.87908 5.94069 6.17345 6.19089 6.24357 6.30814 6.60544 6.70171 6.92029 7.06795 7.47459 7.58161 7.68541 7.87387 7.94916 8.21914 8.35325 8.92073 9.51129 11.01308 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022568 B = 0.002808 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.404399 B = 9968.463493 C =10569.211344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 H 0.096 0.904 4 C -0.046 4.046 5 C -0.018 4.018 6 C -0.200 4.200 7 C -0.211 4.211 8 C -0.043 4.043 9 O -0.176 6.176 10 N -0.699 5.699 11 C 0.511 3.489 12 O -0.520 6.520 13 C 0.497 3.503 14 O -0.534 6.534 15 N -0.686 5.686 16 C 0.119 3.881 17 C 0.011 3.989 18 C -0.522 4.522 19 H 0.061 0.939 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.202 0.798 34 H 0.411 0.589 35 H 0.410 0.590 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 -3.763 -25.147 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.114 0.886 4 C -0.084 4.084 5 C -0.068 4.068 6 C -0.219 4.219 7 C -0.230 4.230 8 C -0.111 4.111 9 O -0.072 6.072 10 N -0.354 5.354 11 C 0.292 3.708 12 O -0.395 6.395 13 C 0.277 3.723 14 O -0.412 6.412 15 N -0.337 5.337 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.218 0.782 34 H 0.247 0.753 35 H 0.246 0.754 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.736 -3.352 -25.143 25.512 hybrid contribution 0.663 -0.504 1.034 1.327 sum -2.073 -3.856 -24.109 24.503 Atomic orbital electron populations 1.22196 0.93979 1.02781 1.03327 1.21052 0.94515 0.97870 0.82740 0.88622 1.20472 0.85953 1.03121 0.98856 1.22241 0.94495 0.89638 1.00407 1.21633 0.92326 1.02539 1.05451 1.21877 0.99001 0.98125 1.04025 1.24020 0.82925 0.99846 1.04280 1.83997 1.18212 1.44016 1.61009 1.45800 1.66039 1.14817 1.08719 1.20437 0.78544 0.86995 0.84857 1.90751 1.48395 1.15421 1.84907 1.19983 0.80439 0.87180 0.84736 1.90719 1.50043 1.15348 1.85069 1.46231 1.63013 1.15060 1.09400 1.21928 0.98444 0.96892 0.83003 1.19361 0.98227 0.94256 0.90848 1.21054 1.44500 0.96648 0.93920 0.92113 1.25008 0.95295 0.94886 0.99127 1.69973 1.48153 1.08145 1.26795 0.86444 0.78487 0.79875 0.82674 1.19572 1.20920 1.20921 0.91903 0.91294 0.91091 0.88121 0.88012 0.83432 0.83421 0.78158 0.75297 0.75412 0.91874 0.91906 0.95672 0.95659 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 2 C 0.14 1.28 2.56 -67.93 -0.17 1.11 16 3 H 0.10 1.06 7.58 -51.93 -0.39 0.66 16 4 C -0.05 -0.32 5.29 -27.88 -0.15 -0.46 16 5 C -0.02 -0.17 6.33 -35.62 -0.23 -0.40 16 6 C -0.20 -2.05 10.69 -39.70 -0.42 -2.47 16 7 C -0.21 -2.11 10.91 -39.70 -0.43 -2.54 16 8 C -0.04 -0.40 12.09 29.42 0.36 -0.04 16 9 O -0.18 -1.88 10.65 5.70 0.06 -1.82 16 10 N -0.70 -7.89 4.68 -54.24 -0.25 -8.14 16 11 C 0.51 7.68 7.85 -11.59 -0.09 7.58 16 12 O -0.52 -8.81 16.14 5.50 0.09 -8.72 16 13 C 0.50 8.63 7.89 -11.59 -0.09 8.54 16 14 O -0.53 -10.07 16.48 5.50 0.09 -9.98 16 15 N -0.69 -12.66 5.55 -60.73 -0.34 -13.00 16 16 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 17 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 18 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 22 Si 0.90 21.30 29.54 -169.99 -5.02 16.27 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.41 4.18 8.07 -40.82 -0.33 3.85 16 35 H 0.41 7.26 7.94 -40.82 -0.32 6.93 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -32.93 353.11 -6.43 -39.37 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.66 Total: 6.29 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.45 Total: -0.15 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.15 Total: -46.58 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.24 Total: -20.52 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.93 -6.43 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321588886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.721 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds