Wall clock time and date at job start Tue Mar 31 2020 07:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46666 * 2 1 4 4 C 1.52997 * 109.47050 * 240.00272 * 2 1 3 5 5 C 1.50708 * 109.47127 * 175.00022 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 N 1.46499 * 109.47391 * 119.99461 * 2 1 3 11 11 C 1.34769 * 120.00448 * 275.00355 * 10 2 1 12 12 O 1.21346 * 119.99865 * 0.02562 * 11 10 2 13 13 C 1.49457 * 120.00298 * 179.97438 * 11 10 2 14 14 O 1.21345 * 119.99749 * 359.97438 * 13 11 10 15 15 N 1.34768 * 119.99884 * 179.97438 * 13 11 10 16 16 C 1.46505 * 119.99872 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.47079 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46876 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99861 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99968 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99908 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47195 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47051 * 119.99531 * 22 20 18 25 25 H 1.48502 * 109.46976 * 239.99482 * 22 20 18 26 26 H 1.09005 * 109.46666 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47404 * 299.99567 * 1 2 3 28 28 H 1.09003 * 109.47621 * 60.00459 * 1 2 3 29 29 H 1.08998 * 109.47369 * 54.99474 * 4 2 1 30 30 H 1.09005 * 109.46999 * 294.99290 * 4 2 1 31 31 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 32 32 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 33 33 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 34 34 H 0.97003 * 119.99551 * 95.00447 * 10 2 1 35 35 H 0.97003 * 120.00414 * 0.02562 * 15 13 11 36 36 H 1.08996 * 109.47461 * 300.00345 * 16 15 13 37 37 H 1.08999 * 109.46439 * 60.00416 * 16 15 13 38 38 H 1.08996 * 109.47321 * 300.00511 * 17 16 15 39 39 H 1.08999 * 109.47080 * 60.00889 * 17 16 15 40 40 H 0.96998 * 119.99619 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 6 4.4156 -1.4849 -0.7752 7 6 5.7105 -1.0013 -1.0723 8 6 5.5507 0.1351 -1.7740 9 8 4.2350 0.3644 -1.9165 10 7 2.0184 -0.6905 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8580 1.1591 2.4117 13 6 2.6448 -0.7228 3.5776 14 8 2.9326 -1.9003 3.5233 15 7 2.7740 -0.0502 4.7383 16 6 3.2613 -0.7410 5.9348 17 6 3.3142 0.2425 7.1056 18 6 3.8161 -0.4680 8.3362 19 1 4.0722 -1.5161 8.2879 20 6 3.9484 0.2200 9.5237 21 7 3.6370 1.4965 9.5824 22 14 4.5712 -0.6605 11.0489 23 1 4.8500 -2.0817 10.7208 24 1 5.8179 -0.0076 11.5229 25 1 3.5402 -0.5922 12.1155 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6053 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2056 31 1 4.1742 -2.3809 -0.2226 32 1 6.6481 -1.4592 -0.7936 33 1 6.3455 0.7574 -2.1578 34 1 2.2491 -1.6317 1.1526 35 1 2.5436 0.8910 4.7818 36 1 2.5879 -1.5623 6.1798 37 1 4.2602 -1.1342 5.7457 38 1 3.9878 1.0635 6.8603 39 1 2.3155 0.6361 7.2949 40 1 3.7304 1.9805 10.4177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321588886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:11 Heat of formation + Delta-G solvation = -95.383354 kcal Electronic energy + Delta-G solvation = -22879.288790 eV Core-core repulsion = 19273.426213 eV Total energy + Delta-G solvation = -3605.862577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.48357 -41.73286 -39.79072 -37.58856 -36.70792 -34.86901 -33.91946 -33.12057 -31.70251 -30.93585 -27.50509 -27.17521 -25.46802 -23.04784 -22.73336 -22.35854 -21.46729 -21.31082 -19.60436 -18.59799 -18.27234 -17.94006 -17.19754 -16.95697 -16.70813 -16.52063 -16.14554 -15.85842 -15.46843 -15.00757 -14.58889 -14.57471 -14.31686 -13.96960 -13.75031 -13.64277 -13.29176 -13.26017 -13.10787 -12.96761 -12.74426 -12.52633 -12.51168 -12.30542 -12.07704 -11.69485 -11.42483 -10.84391 -10.69153 -10.63028 -10.38602 -10.20663 -9.36724 -8.24297 -6.35619 0.32651 0.79948 1.31833 1.42136 1.43418 1.56400 1.70812 2.10552 2.14091 2.39450 2.68092 3.10715 3.42434 3.65234 3.76883 4.09734 4.15139 4.26116 4.31489 4.37611 4.43759 4.53928 4.70153 4.79394 4.79766 4.93439 4.96227 5.01934 5.07108 5.23970 5.27592 5.33067 5.41473 5.53475 5.60522 5.74752 5.92990 6.11960 6.20522 6.35688 6.71052 6.79303 6.93007 7.34094 8.88033 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022568 B = 0.002808 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.404399 B = 9968.463493 C =10569.211344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.141 3.859 3 H 0.075 0.925 4 C -0.039 4.039 5 C -0.027 4.027 6 C -0.220 4.220 7 C -0.235 4.235 8 C -0.047 4.047 9 O -0.190 6.190 10 N -0.680 5.680 11 C 0.515 3.485 12 O -0.543 6.543 13 C 0.499 3.501 14 O -0.547 6.547 15 N -0.690 5.690 16 C 0.138 3.862 17 C 0.019 3.981 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.278 1.278 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.231 0.769 34 H 0.418 0.582 35 H 0.413 0.587 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 -4.902 -26.334 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.093 0.907 4 C -0.076 4.076 5 C -0.077 4.077 6 C -0.239 4.239 7 C -0.254 4.254 8 C -0.114 4.114 9 O -0.087 6.087 10 N -0.334 5.334 11 C 0.295 3.705 12 O -0.420 6.420 13 C 0.279 3.721 14 O -0.426 6.426 15 N -0.341 5.341 16 C 0.016 3.984 17 C -0.019 4.019 18 C -0.582 4.582 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.203 1.203 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.247 0.753 34 H 0.256 0.744 35 H 0.250 0.750 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.980 -4.520 -26.380 26.930 hybrid contribution 0.749 -0.152 1.313 1.519 sum -2.231 -4.672 -25.067 25.596 Atomic orbital electron populations 1.22163 0.92381 1.03866 1.03324 1.21239 0.95642 0.96886 0.82445 0.90695 1.20590 0.84127 1.04594 0.98289 1.22749 0.95754 0.89188 0.99993 1.21890 0.92806 1.03191 1.06048 1.22189 0.99546 0.98882 1.04798 1.24656 0.83099 0.99959 1.03657 1.84001 1.18893 1.44500 1.61328 1.45838 1.64270 1.15066 1.08207 1.19950 0.78907 0.86597 0.85018 1.90750 1.49927 1.16193 1.85170 1.20388 0.79628 0.86991 0.85055 1.90705 1.50496 1.15992 1.85398 1.46079 1.63507 1.15224 1.09272 1.21474 0.98445 0.95723 0.82800 1.19177 0.96472 0.94326 0.91921 1.21480 1.44565 0.97109 0.95090 0.91679 1.25933 0.95377 0.95611 1.02524 1.70088 1.49178 1.09699 1.27847 0.85342 0.77934 0.78983 0.78446 1.18555 1.20382 1.20336 0.90255 0.93798 0.88613 0.85646 0.85526 0.82845 0.82530 0.75263 0.74425 0.75035 0.91922 0.92149 0.97539 0.97401 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 71.98 0.68 -1.37 16 2 C 0.14 2.29 2.56 44.99 0.12 2.40 16 3 H 0.07 1.59 7.58 -2.38 -0.02 1.57 16 4 C -0.04 -0.42 5.29 29.85 0.16 -0.26 16 5 C -0.03 -0.49 6.33 24.83 0.16 -0.33 16 6 C -0.22 -4.28 10.69 22.19 0.24 -4.04 16 7 C -0.24 -4.52 10.91 22.19 0.24 -4.28 16 8 C -0.05 -0.81 12.09 66.97 0.81 0.00 16 9 O -0.19 -3.83 10.65 -2.51 -0.03 -3.86 16 10 N -0.68 -14.48 4.68 -443.88 -2.08 -16.56 16 11 C 0.52 15.28 7.85 87.27 0.69 15.96 16 12 O -0.54 -18.46 16.14 -3.24 -0.05 -18.52 16 13 C 0.50 17.20 7.89 87.27 0.69 17.89 16 14 O -0.55 -20.28 16.48 -3.23 -0.05 -20.33 16 15 N -0.69 -25.73 5.55 -464.41 -2.58 -28.31 16 16 C 0.14 5.88 5.61 86.38 0.48 6.36 16 17 C 0.02 0.95 5.09 29.85 0.15 1.10 16 18 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 19 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 20 C 0.00 0.24 5.46 84.65 0.46 0.70 16 21 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 22 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 26 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.23 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.42 7.79 8.07 -92.71 -0.75 7.04 16 35 H 0.41 14.98 7.94 -92.71 -0.74 14.25 16 36 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -71.03 353.11 2.21 -68.82 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.42 Total: 23.92 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.11 Total: 4.14 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.37 Total: -99.71 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.13 Total: -42.71 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.03 2.21 -68.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321588886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.568 kcal (2) G-P(sol) polarization free energy of solvation -71.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds