Wall clock time and date at job start Tue Mar 31 2020 07:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46752 * 2 1 4 4 C 1.53005 * 109.46905 * 240.00358 * 2 1 3 5 5 O 1.42901 * 109.47076 * 304.99669 * 4 2 1 6 6 N 1.46497 * 109.47210 * 120.00231 * 2 1 3 7 7 C 1.46495 * 120.00056 * 59.99733 * 6 2 1 8 8 C 1.34776 * 119.99998 * 240.00235 * 6 2 1 9 9 O 1.21595 * 119.99623 * 359.97438 * 8 6 2 10 10 N 1.34771 * 119.99939 * 179.97438 * 8 6 2 11 11 C 1.40031 * 119.99754 * 175.51806 * 10 8 6 12 12 C 1.38912 * 120.00438 * 214.84541 * 11 10 8 13 13 C 1.38009 * 120.00217 * 179.78874 * 12 11 10 14 14 C 1.38903 * 119.99892 * 0.47347 * 13 12 11 15 15 O 1.35778 * 119.99645 * 179.76452 * 14 13 12 16 16 C 1.34816 * 116.99618 * 185.35713 * 15 14 13 17 17 H 1.07993 * 120.00237 * 354.95630 * 16 15 14 18 18 C 1.38630 * 119.99832 * 174.96503 * 16 15 14 19 19 N 1.31577 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47245 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47122 * 120.00083 * 20 18 16 23 23 H 1.48501 * 109.47129 * 239.99830 * 20 18 16 24 24 C 1.38901 * 120.00236 * 359.78472 * 14 13 12 25 25 C 1.38013 * 120.00225 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.47306 * 59.99972 * 1 2 3 27 27 H 1.09004 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47150 * 299.99726 * 1 2 3 29 29 H 1.08993 * 109.46864 * 65.00148 * 4 2 1 30 30 H 1.09003 * 109.46530 * 184.99975 * 4 2 1 31 31 H 0.96697 * 113.99583 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.46509 * 90.00358 * 7 6 2 33 33 H 1.08999 * 109.47696 * 210.00196 * 7 6 2 34 34 H 1.08997 * 109.47626 * 330.00586 * 7 6 2 35 35 H 0.97001 * 120.00577 * 355.52266 * 10 8 6 36 36 H 1.08006 * 119.99366 * 0.03480 * 12 11 10 37 37 H 1.08000 * 119.99919 * 180.23487 * 13 12 11 38 38 H 0.96995 * 120.00451 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.00250 * 179.97438 * 24 14 13 40 40 H 1.07995 * 120.00130 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3095 6 7 2.0184 -0.6906 1.1961 7 6 1.6644 -2.0932 1.4279 8 6 2.7932 -0.0357 2.0833 9 8 3.0872 1.1284 1.8907 10 7 3.2420 -0.6709 3.1839 11 6 4.1227 -0.0208 4.0573 12 6 5.1149 -0.7430 4.7081 13 6 5.9856 -0.1015 5.5654 14 6 5.8635 1.2646 5.7852 15 8 6.7171 1.8948 6.6324 16 6 6.4765 3.1966 6.8873 17 1 5.6856 3.7123 6.3630 18 6 7.2445 3.8733 7.8222 19 7 8.2079 3.2450 8.4611 20 14 6.9115 5.6773 8.1748 21 1 5.7841 6.1469 7.3302 22 1 6.5604 5.8449 9.6079 23 1 8.1260 6.4743 7.8663 24 6 4.8680 1.9859 5.1386 25 6 4.0004 1.3453 4.2774 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7516 -0.1582 -2.1369 30 1 3.1263 -0.7994 -1.2056 31 1 1.7506 -2.5463 -2.0778 32 1 2.4158 -2.7376 0.9715 33 1 1.6238 -2.2853 2.5001 34 1 0.6905 -2.3003 0.9846 35 1 2.9551 -1.5784 3.3712 36 1 5.2075 -1.8059 4.5400 37 1 6.7594 -0.6624 6.0685 38 1 8.7450 3.7184 9.1155 39 1 4.7728 3.0479 5.3098 40 1 3.2261 1.9060 3.7750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321850458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:32 Heat of formation + Delta-G solvation = -62.337764 kcal Electronic energy + Delta-G solvation = -23274.975616 eV Core-core repulsion = 19670.546003 eV Total energy + Delta-G solvation = -3604.429613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.55726 -38.90375 -37.83794 -36.48485 -35.27849 -34.03579 -32.19341 -31.42399 -30.12990 -27.76255 -27.12960 -26.35917 -25.20872 -22.70923 -21.97701 -20.73218 -19.41142 -18.73888 -17.89711 -17.53219 -16.99405 -16.56243 -15.83823 -15.64238 -14.72648 -14.47284 -14.38876 -14.12506 -13.80015 -13.54945 -13.49252 -13.20978 -13.00324 -12.80852 -12.57015 -12.44217 -12.35295 -11.72772 -11.61608 -11.50313 -11.36871 -11.20010 -10.99551 -10.68264 -10.38076 -10.36789 -9.83517 -9.62487 -9.12392 -8.76656 -8.60652 -8.13304 -6.85158 -6.39497 -3.96918 2.20499 2.30776 2.65564 3.15755 3.18697 3.24420 3.34550 3.95940 3.97983 4.02854 4.60978 4.65831 4.81404 4.98352 5.03396 5.14970 5.18822 5.26100 5.32070 5.41030 5.47418 5.72435 5.73029 5.75002 5.82280 6.00670 6.18422 6.25208 6.30771 6.51102 6.76914 6.80644 7.02976 7.17117 7.22272 7.24919 7.40482 7.50888 7.85816 8.03862 8.06801 8.71908 9.06724 9.77067 10.78793 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.002950 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.981332 B = 9490.824959 C =10061.352461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 H 0.114 0.886 4 C 0.066 3.934 5 O -0.568 6.568 6 N -0.626 5.626 7 C 0.091 3.909 8 C 0.700 3.300 9 O -0.578 6.578 10 N -0.674 5.674 11 C 0.053 3.947 12 C -0.096 4.096 13 C -0.178 4.178 14 C 0.145 3.855 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.219 4.219 25 C -0.064 4.064 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.376 0.624 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.269 0.731 39 H 0.130 0.870 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 -11.028 -16.883 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.132 0.868 4 C -0.012 4.012 5 O -0.374 6.374 6 N -0.364 5.364 7 C -0.053 4.053 8 C 0.402 3.598 9 O -0.455 6.455 10 N -0.322 5.322 11 C -0.040 4.040 12 C -0.116 4.116 13 C -0.197 4.197 14 C 0.091 3.909 15 O -0.083 6.083 16 C -0.465 4.465 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.239 4.239 25 C -0.084 4.084 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.223 0.777 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.910 -10.001 -16.191 23.573 hybrid contribution -0.025 0.171 -0.346 0.387 sum -13.935 -9.831 -16.537 23.755 Atomic orbital electron populations 1.22051 0.94577 1.02815 1.02127 1.21034 0.94575 0.97168 0.82162 0.86834 1.22597 0.97121 0.84023 0.97497 1.86491 1.72988 1.27407 1.50472 1.47013 1.53712 1.12499 1.23203 1.21623 1.02078 0.81494 1.00074 1.15931 0.79086 0.84926 0.79809 1.90907 1.62369 1.15099 1.77169 1.42456 1.48810 1.18020 1.22937 1.17076 0.95425 0.92635 0.98872 1.20321 0.94069 0.98529 0.98703 1.19963 1.03012 0.92165 1.04602 1.19398 0.89374 0.91716 0.90389 1.83974 1.44687 1.25115 1.54485 1.21381 1.18988 0.83078 1.23062 0.89000 1.25273 0.95598 1.00276 0.95424 1.70056 1.18741 1.36756 1.24468 0.85655 0.78626 0.80630 0.78592 1.19053 1.20194 1.20197 1.21114 0.99380 1.00971 1.02454 1.20889 0.98814 0.92969 0.95774 0.91684 0.91433 0.92322 0.92601 0.93190 0.77698 0.92705 0.92495 0.90183 0.76644 0.86872 0.86098 0.92160 0.85253 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.97 37.16 0.33 -1.01 16 2 C 0.15 1.58 3.17 -67.93 -0.22 1.37 16 3 H 0.11 1.37 6.90 -51.93 -0.36 1.01 16 4 C 0.07 0.52 6.79 37.16 0.25 0.77 16 5 O -0.57 -3.77 10.51 -35.23 -0.37 -4.14 16 6 N -0.63 -7.32 2.76 -179.67 -0.50 -7.82 16 7 C 0.09 0.78 8.53 59.84 0.51 1.29 16 8 C 0.70 11.04 8.12 -86.92 -0.71 10.34 16 9 O -0.58 -11.35 13.11 5.28 0.07 -11.28 16 10 N -0.67 -10.10 5.22 -14.18 -0.07 -10.18 16 11 C 0.05 0.99 6.30 -83.61 -0.53 0.46 16 12 C -0.10 -1.73 9.96 -39.42 -0.39 -2.13 16 13 C -0.18 -3.79 9.98 -39.42 -0.39 -4.18 16 14 C 0.14 3.61 6.65 -39.09 -0.26 3.35 16 15 O -0.18 -5.21 9.76 0.00 0.00 -5.21 16 16 C -0.39 -11.13 9.48 30.88 0.29 -10.84 16 17 H 0.09 2.47 5.20 -52.49 -0.27 2.19 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.75 13.67 55.48 0.76 -25.00 16 20 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 C -0.22 -5.11 9.16 -39.42 -0.36 -5.48 16 25 C -0.06 -1.36 8.69 -39.41 -0.34 -1.70 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.56 6.08 -51.93 -0.32 0.25 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 1.03 9.12 45.56 0.42 1.45 16 32 H 0.05 0.45 7.97 -51.93 -0.41 0.04 16 33 H 0.06 0.43 6.30 -51.93 -0.33 0.10 16 34 H 0.08 0.63 5.87 -51.93 -0.30 0.32 16 35 H 0.40 4.57 6.52 -40.82 -0.27 4.30 16 36 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 37 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.13 3.04 5.63 -52.49 -0.30 2.74 16 40 H 0.13 2.67 6.22 -52.49 -0.33 2.34 16 LS Contribution 330.00 15.07 4.97 4.97 Total: -1.00 -34.79 330.00 -6.20 -41.00 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.14 Total: 8.42 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.90 Total: -6.80 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.19 Total: -42.99 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.30 Total: -20.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.79 -6.20 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321850458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.342 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds