Wall clock time and date at job start Tue Mar 31 2020 07:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46752 * 2 1 4 4 C 1.53005 * 109.46905 * 240.00358 * 2 1 3 5 5 O 1.42901 * 109.47076 * 304.99669 * 4 2 1 6 6 N 1.46497 * 109.47210 * 120.00231 * 2 1 3 7 7 C 1.46495 * 120.00056 * 59.99733 * 6 2 1 8 8 C 1.34776 * 119.99998 * 240.00235 * 6 2 1 9 9 O 1.21595 * 119.99623 * 359.97438 * 8 6 2 10 10 N 1.34771 * 119.99939 * 179.97438 * 8 6 2 11 11 C 1.40031 * 119.99754 * 175.51806 * 10 8 6 12 12 C 1.38912 * 120.00438 * 214.84541 * 11 10 8 13 13 C 1.38009 * 120.00217 * 179.78874 * 12 11 10 14 14 C 1.38903 * 119.99892 * 0.47347 * 13 12 11 15 15 O 1.35778 * 119.99645 * 179.76452 * 14 13 12 16 16 C 1.34816 * 116.99618 * 185.35713 * 15 14 13 17 17 H 1.07993 * 120.00237 * 354.95630 * 16 15 14 18 18 C 1.38630 * 119.99832 * 174.96503 * 16 15 14 19 19 N 1.31577 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47245 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47122 * 120.00083 * 20 18 16 23 23 H 1.48501 * 109.47129 * 239.99830 * 20 18 16 24 24 C 1.38901 * 120.00236 * 359.78472 * 14 13 12 25 25 C 1.38013 * 120.00225 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.47306 * 59.99972 * 1 2 3 27 27 H 1.09004 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47150 * 299.99726 * 1 2 3 29 29 H 1.08993 * 109.46864 * 65.00148 * 4 2 1 30 30 H 1.09003 * 109.46530 * 184.99975 * 4 2 1 31 31 H 0.96697 * 113.99583 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.46509 * 90.00358 * 7 6 2 33 33 H 1.08999 * 109.47696 * 210.00196 * 7 6 2 34 34 H 1.08997 * 109.47626 * 330.00586 * 7 6 2 35 35 H 0.97001 * 120.00577 * 355.52266 * 10 8 6 36 36 H 1.08006 * 119.99366 * 0.03480 * 12 11 10 37 37 H 1.08000 * 119.99919 * 180.23487 * 13 12 11 38 38 H 0.96995 * 120.00451 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.00250 * 179.97438 * 24 14 13 40 40 H 1.07995 * 120.00130 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3095 6 7 2.0184 -0.6906 1.1961 7 6 1.6644 -2.0932 1.4279 8 6 2.7932 -0.0357 2.0833 9 8 3.0872 1.1284 1.8907 10 7 3.2420 -0.6709 3.1839 11 6 4.1227 -0.0208 4.0573 12 6 5.1149 -0.7430 4.7081 13 6 5.9856 -0.1015 5.5654 14 6 5.8635 1.2646 5.7852 15 8 6.7171 1.8948 6.6324 16 6 6.4765 3.1966 6.8873 17 1 5.6856 3.7123 6.3630 18 6 7.2445 3.8733 7.8222 19 7 8.2079 3.2450 8.4611 20 14 6.9115 5.6773 8.1748 21 1 5.7841 6.1469 7.3302 22 1 6.5604 5.8449 9.6079 23 1 8.1260 6.4743 7.8663 24 6 4.8680 1.9859 5.1386 25 6 4.0004 1.3453 4.2774 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7516 -0.1582 -2.1369 30 1 3.1263 -0.7994 -1.2056 31 1 1.7506 -2.5463 -2.0778 32 1 2.4158 -2.7376 0.9715 33 1 1.6238 -2.2853 2.5001 34 1 0.6905 -2.3003 0.9846 35 1 2.9551 -1.5784 3.3712 36 1 5.2075 -1.8059 4.5400 37 1 6.7594 -0.6624 6.0685 38 1 8.7450 3.7184 9.1155 39 1 4.7728 3.0479 5.3098 40 1 3.2261 1.9060 3.7750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321850458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:31 Heat of formation + Delta-G solvation = -88.527469 kcal Electronic energy + Delta-G solvation = -23276.111287 eV Core-core repulsion = 19670.546003 eV Total energy + Delta-G solvation = -3605.565284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.81420 -40.57638 -38.92266 -37.92013 -36.21358 -35.45688 -34.17571 -32.37347 -31.84170 -29.34040 -27.93268 -27.30092 -27.00812 -24.14387 -23.55563 -22.09133 -20.57633 -20.01650 -19.53109 -18.82327 -18.08851 -18.04638 -16.92399 -16.72826 -16.27959 -16.12694 -15.56024 -15.43599 -15.24820 -15.09992 -14.66380 -14.65119 -14.28400 -13.89560 -13.68192 -13.57143 -13.37977 -13.23710 -13.09823 -12.92900 -12.72616 -12.42720 -12.30802 -12.11000 -11.92426 -11.43905 -11.27038 -10.95392 -10.83189 -10.53833 -9.82544 -9.67802 -8.56735 -8.46297 -6.12886 0.53453 0.60030 1.35253 1.42321 1.53256 1.55204 2.05831 2.18502 2.83637 2.90773 3.16545 3.43032 3.52836 3.87272 4.10170 4.12259 4.13910 4.29268 4.38715 4.49376 4.56026 4.60127 4.65790 4.72975 4.75739 4.82568 5.00908 5.06578 5.09047 5.14496 5.30619 5.36471 5.40047 5.60448 5.62922 5.71583 5.96008 6.03587 6.19764 6.88971 6.93174 6.98576 7.49277 7.78311 8.76759 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.002950 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.981332 B = 9490.824959 C =10061.352461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.143 3.857 3 H 0.089 0.911 4 C 0.077 3.923 5 O -0.574 6.574 6 N -0.616 5.616 7 C 0.086 3.914 8 C 0.694 3.306 9 O -0.622 6.622 10 N -0.663 5.663 11 C 0.080 3.920 12 C -0.079 4.079 13 C -0.177 4.177 14 C 0.106 3.894 15 O -0.228 6.228 16 C -0.413 4.413 17 H 0.096 0.904 18 C -0.021 4.021 19 N -0.919 5.919 20 Si 1.016 2.984 21 H -0.256 1.256 22 H -0.265 1.265 23 H -0.267 1.267 24 C -0.227 4.227 25 C -0.076 4.076 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.396 0.604 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.419 0.581 36 H 0.166 0.834 37 H 0.130 0.870 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.238 -13.020 -18.859 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.002 4.002 5 O -0.382 6.382 6 N -0.353 5.353 7 C -0.056 4.056 8 C 0.396 3.604 9 O -0.503 6.503 10 N -0.314 5.314 11 C -0.015 4.015 12 C -0.099 4.099 13 C -0.197 4.197 14 C 0.055 3.945 15 O -0.134 6.134 16 C -0.489 4.489 17 H 0.114 0.886 18 C -0.218 4.218 19 N -0.557 5.557 20 Si 0.836 3.164 21 H -0.180 1.180 22 H -0.190 1.190 23 H -0.192 1.192 24 C -0.247 4.247 25 C -0.096 4.096 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.246 0.754 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.259 0.741 36 H 0.183 0.817 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.010 -12.096 -18.244 27.120 hybrid contribution 0.386 0.504 -0.021 0.635 sum -15.624 -11.592 -18.265 26.685 Atomic orbital electron populations 1.21974 0.93048 1.03293 1.02276 1.21224 0.95728 0.96387 0.82689 0.89335 1.22365 0.96218 0.84815 0.96757 1.86428 1.72917 1.26904 1.51939 1.47112 1.52038 1.13612 1.22492 1.21853 1.03022 0.79401 1.01303 1.16157 0.79407 0.84528 0.80320 1.90890 1.64024 1.17246 1.78133 1.42276 1.48098 1.18753 1.22231 1.17196 0.94977 0.91820 0.97484 1.20728 0.91967 1.00773 0.96423 1.20301 1.03733 0.90884 1.04789 1.19907 0.90174 0.93310 0.91061 1.83935 1.47021 1.25503 1.56967 1.21802 1.19605 0.83669 1.23810 0.88626 1.26518 0.95082 1.05403 0.94805 1.70182 1.20466 1.39113 1.25946 0.84563 0.78946 0.74063 0.78844 1.17990 1.19031 1.19208 1.21086 0.99894 1.00562 1.03183 1.20928 0.98589 0.94465 0.95662 0.90050 0.90630 0.93740 0.90579 0.94395 0.75447 0.91636 0.91124 0.88970 0.74090 0.81690 0.85174 0.91788 0.86650 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.97 71.98 0.65 -1.54 16 2 C 0.14 2.67 3.17 44.99 0.14 2.81 16 3 H 0.09 2.12 6.90 -2.39 -0.02 2.10 16 4 C 0.08 1.00 6.79 71.98 0.49 1.48 16 5 O -0.57 -5.48 10.51 -148.98 -1.57 -7.04 16 6 N -0.62 -12.91 2.76 -840.61 -2.32 -15.23 16 7 C 0.09 1.14 8.53 127.77 1.09 2.23 16 8 C 0.69 20.63 8.12 179.06 1.45 22.08 16 9 O -0.62 -24.29 13.11 -4.02 -0.05 -24.34 16 10 N -0.66 -17.88 5.22 -317.04 -1.65 -19.53 16 11 C 0.08 2.81 6.30 38.15 0.24 3.05 16 12 C -0.08 -2.62 9.96 22.38 0.22 -2.39 16 13 C -0.18 -7.48 9.98 22.37 0.22 -7.25 16 14 C 0.11 5.47 6.65 22.59 0.15 5.62 16 15 O -0.23 -14.00 9.76 -22.90 -0.22 -14.22 16 16 C -0.41 -24.90 9.48 67.91 0.64 -24.25 16 17 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 18 C -0.02 -1.20 5.49 84.82 0.47 -0.73 16 19 N -0.92 -57.14 13.67 21.61 0.30 -56.85 16 20 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 C -0.23 -11.02 9.16 22.38 0.20 -10.81 16 25 C -0.08 -3.22 8.69 22.38 0.19 -3.03 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.00 6.08 -2.38 -0.01 0.99 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.40 0.65 9.12 -74.06 -0.68 -0.03 16 32 H 0.07 0.79 7.97 -2.38 -0.02 0.77 16 33 H 0.07 0.75 6.30 -2.39 -0.02 0.74 16 34 H 0.09 1.07 5.87 -2.39 -0.01 1.06 16 35 H 0.42 7.77 6.52 -92.71 -0.60 7.17 16 36 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 37 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.12 5.77 5.63 -2.91 -0.02 5.76 16 40 H 0.12 5.31 6.22 -2.91 -0.02 5.29 16 Total: -1.00 -80.75 330.00 2.49 -78.26 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.18 Total: 25.25 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 6.17 Total: -12.72 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -3.68 Total: -91.61 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.84 Total: -45.61 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -80.75 2.49 -78.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321850458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.272 kcal (2) G-P(sol) polarization free energy of solvation -80.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds