Wall clock time and date at job start Tue Mar 31 2020 07:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47407 * 2 1 4 4 C 1.53002 * 109.47210 * 119.99892 * 2 1 3 5 5 C 1.52995 * 109.47243 * 185.00293 * 4 2 1 6 6 O 1.42901 * 109.47064 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47275 * 240.00090 * 2 1 3 8 8 C 1.34774 * 120.00342 * 84.99905 * 7 2 1 9 9 O 1.21596 * 119.99724 * 0.02562 * 8 7 2 10 10 N 1.34779 * 120.00285 * 179.72518 * 8 7 2 11 11 C 1.40017 * 120.00165 * 175.77137 * 10 8 7 12 12 C 1.38912 * 120.00161 * 214.85644 * 11 10 8 13 13 C 1.38010 * 120.00036 * 179.76303 * 12 11 10 14 14 C 1.38905 * 119.99820 * 0.48348 * 13 12 11 15 15 O 1.35783 * 119.99765 * 179.74431 * 14 13 12 16 16 C 1.34814 * 117.00326 * 185.36503 * 15 14 13 17 17 H 1.08004 * 119.99584 * 354.96676 * 16 15 14 18 18 C 1.38627 * 120.00438 * 174.96435 * 16 15 14 19 19 N 1.31572 * 119.99830 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47037 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47147 * 119.99849 * 20 18 16 23 23 H 1.48492 * 109.47288 * 239.99966 * 20 18 16 24 24 C 1.38898 * 120.00229 * 359.77039 * 14 13 12 25 25 C 1.38001 * 120.00398 * 359.97438 * 24 14 13 26 26 H 1.08996 * 109.47307 * 300.00255 * 1 2 3 27 27 H 1.09004 * 109.47352 * 60.00027 * 1 2 3 28 28 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46966 * 305.00422 * 4 2 1 30 30 H 1.08997 * 109.46829 * 65.00127 * 4 2 1 31 31 H 1.09000 * 109.47244 * 299.99958 * 5 4 2 32 32 H 1.08998 * 109.47869 * 60.00133 * 5 4 2 33 33 H 0.96705 * 113.99923 * 179.97438 * 6 5 4 34 34 H 0.97003 * 119.99816 * 264.99705 * 7 2 1 35 35 H 0.97002 * 119.99241 * 355.76763 * 10 8 7 36 36 H 1.08002 * 119.99660 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.00147 * 180.22509 * 13 12 11 38 38 H 0.97004 * 120.00448 * 180.02562 * 19 18 16 39 39 H 1.08001 * 119.99908 * 179.97438 * 24 14 13 40 40 H 1.07997 * 120.00407 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3137 6 8 4.0411 -1.2873 2.4802 7 7 2.0183 -0.6906 -1.1961 8 6 2.1470 -0.0183 -2.3571 9 8 1.8583 1.1616 -2.4116 10 7 2.6016 -0.6523 -3.4562 11 6 2.6518 0.0215 -4.6826 12 6 2.4021 -0.6661 -5.8635 13 6 2.4467 -0.0009 -7.0720 14 6 2.7513 1.3538 -7.1081 15 8 2.8003 2.0071 -8.2975 16 6 3.2094 3.2914 -8.2740 17 1 3.4019 3.7796 -7.3300 18 6 3.3830 3.9855 -9.4614 19 7 3.1480 3.3909 -10.6113 20 14 3.9504 5.7649 -9.4288 21 1 4.1446 6.1968 -8.0213 22 1 5.2338 5.8887 -10.1655 23 1 2.9248 6.6235 -10.0736 24 6 3.0061 2.0402 -5.9278 25 6 2.9563 1.3763 -4.7190 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6053 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0727 0.4260 32 1 3.8532 0.4370 1.3574 33 1 5.0020 -1.2597 2.5856 34 1 2.2490 -1.6318 -1.1526 35 1 2.8940 -1.5753 -3.3975 36 1 2.1696 -1.7204 -5.8357 37 1 2.2490 -0.5347 -7.9898 38 1 3.2698 3.8764 -11.4423 39 1 3.2433 3.0935 -5.9560 40 1 3.1549 1.9099 -3.8012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323072336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:31 Heat of formation + Delta-G solvation = -81.802760 kcal Electronic energy + Delta-G solvation = -22790.736034 eV Core-core repulsion = 19185.462355 eV Total energy + Delta-G solvation = -3605.273678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42391 -38.87079 -37.79239 -36.71288 -35.64887 -33.96573 -32.23903 -31.60445 -30.15227 -29.26189 -27.64713 -25.25011 -23.75193 -22.54797 -21.90498 -20.94962 -20.49895 -18.61707 -17.95996 -17.72014 -17.14443 -16.60579 -15.89633 -15.36824 -14.95047 -14.70253 -14.55651 -14.44403 -13.91231 -13.60357 -13.53210 -13.43875 -12.84078 -12.82727 -12.57726 -12.30782 -12.09932 -11.72920 -11.57037 -11.48120 -11.41875 -11.19981 -11.01271 -10.70900 -10.39648 -10.37518 -9.94011 -9.65717 -9.21438 -9.14297 -8.66131 -8.16247 -6.88452 -6.41427 -3.98891 2.17914 2.28471 2.70393 3.14458 3.17319 3.22988 3.34373 3.71041 4.00486 4.23824 4.59953 4.60190 4.62057 4.81680 5.09317 5.13046 5.13185 5.22138 5.29662 5.44138 5.52600 5.60350 5.70499 5.75398 5.82536 6.03778 6.16936 6.22165 6.31937 6.43996 6.70775 6.77657 6.99842 7.14446 7.20214 7.23020 7.37650 7.48405 7.83037 8.03634 8.06989 8.69535 9.04729 9.74794 10.76777 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.002758 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.009500 B =10151.199931 C =10544.480708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.163 3.837 3 H 0.091 0.909 4 C -0.126 4.126 5 C 0.074 3.926 6 O -0.578 6.578 7 N -0.746 5.746 8 C 0.699 3.301 9 O -0.574 6.574 10 N -0.675 5.675 11 C 0.053 3.947 12 C -0.095 4.095 13 C -0.178 4.178 14 C 0.145 3.855 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.220 4.220 25 C -0.064 4.064 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.381 0.619 34 H 0.393 0.607 35 H 0.397 0.603 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.269 0.731 39 H 0.130 0.870 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 -10.227 21.273 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.058 3.942 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.004 4.004 6 O -0.383 6.383 7 N -0.403 5.403 8 C 0.400 3.600 9 O -0.451 6.451 10 N -0.322 5.322 11 C -0.040 4.040 12 C -0.116 4.116 13 C -0.198 4.198 14 C 0.091 3.909 15 O -0.082 6.082 16 C -0.465 4.465 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.240 4.240 25 C -0.084 4.084 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.228 0.772 34 H 0.227 0.773 35 H 0.231 0.769 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.147 0.853 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.691 -9.236 20.851 22.815 hybrid contribution 1.083 0.056 -0.030 1.085 sum 0.393 -9.180 20.820 22.758 Atomic orbital electron populations 1.22182 0.94899 1.02188 1.02937 1.20709 0.94177 0.97281 0.82016 0.89066 1.21829 0.94426 1.02158 0.98023 1.22196 0.94854 0.96007 0.87298 1.86442 1.27412 1.78754 1.45735 1.45271 1.72429 1.13471 1.09093 1.15978 0.78432 0.85361 0.80257 1.90936 1.56391 1.13934 1.83815 1.42304 1.67295 1.15726 1.06920 1.17036 1.11207 0.92824 0.82961 1.20325 1.01643 0.98713 0.90910 1.19970 1.10172 0.92256 0.97387 1.19406 0.93386 0.91556 0.86535 1.83973 1.73654 1.25830 1.24746 1.21380 1.45783 0.84778 0.94596 0.88996 1.25275 0.96945 1.00207 0.94149 1.70056 1.45414 1.37058 0.97418 0.85651 0.78436 0.80536 0.78854 1.19055 1.20192 1.20175 1.21110 1.10126 1.01141 0.91580 1.20876 0.96867 0.92931 0.97747 0.91624 0.91444 0.92510 0.89534 0.90647 0.93412 0.93379 0.77226 0.77313 0.76938 0.86849 0.86102 0.92138 0.85260 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.15 0.35 -1.09 16 2 C 0.16 1.45 2.57 -67.93 -0.17 1.27 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.13 -0.87 5.12 -26.73 -0.14 -1.01 16 5 C 0.07 0.53 6.93 37.16 0.26 0.79 16 6 O -0.58 -4.37 13.66 -35.23 -0.48 -4.86 16 7 N -0.75 -7.06 4.53 -58.68 -0.27 -7.33 16 8 C 0.70 9.88 8.37 -86.92 -0.73 9.16 16 9 O -0.57 -10.66 13.44 5.28 0.07 -10.59 16 10 N -0.68 -9.14 5.35 -14.18 -0.08 -9.21 16 11 C 0.05 0.94 6.30 -83.62 -0.53 0.41 16 12 C -0.10 -1.67 9.96 -39.42 -0.39 -2.06 16 13 C -0.18 -3.73 9.99 -39.42 -0.39 -4.12 16 14 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 15 O -0.18 -5.15 9.76 -0.01 0.00 -5.15 16 16 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16 17 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 20 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.22 -5.03 9.16 -39.42 -0.36 -5.39 16 25 C -0.06 -1.31 8.69 -39.42 -0.34 -1.65 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.33 7.75 -51.93 -0.40 -0.08 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.38 1.32 9.12 45.56 0.42 1.74 16 34 H 0.39 2.59 8.62 -40.82 -0.35 2.24 16 35 H 0.40 3.80 8.84 -40.82 -0.36 3.44 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.13 2.99 5.63 -52.49 -0.30 2.69 16 40 H 0.13 2.57 6.22 -52.49 -0.33 2.25 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -35.04 341.71 -6.88 -41.92 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -4.50 Total: 9.19 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.51 Total: -10.19 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.42 Total: -41.34 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.41 Total: -20.59 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.04 -6.88 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323072336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.885 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds