Wall clock time and date at job start Tue Mar 31 2020 07:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47407 * 2 1 4 4 C 1.53002 * 109.47210 * 119.99892 * 2 1 3 5 5 C 1.52995 * 109.47243 * 185.00293 * 4 2 1 6 6 O 1.42901 * 109.47064 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47275 * 240.00090 * 2 1 3 8 8 C 1.34774 * 120.00342 * 84.99905 * 7 2 1 9 9 O 1.21596 * 119.99724 * 0.02562 * 8 7 2 10 10 N 1.34779 * 120.00285 * 179.72518 * 8 7 2 11 11 C 1.40017 * 120.00165 * 175.77137 * 10 8 7 12 12 C 1.38912 * 120.00161 * 214.85644 * 11 10 8 13 13 C 1.38010 * 120.00036 * 179.76303 * 12 11 10 14 14 C 1.38905 * 119.99820 * 0.48348 * 13 12 11 15 15 O 1.35783 * 119.99765 * 179.74431 * 14 13 12 16 16 C 1.34814 * 117.00326 * 185.36503 * 15 14 13 17 17 H 1.08004 * 119.99584 * 354.96676 * 16 15 14 18 18 C 1.38627 * 120.00438 * 174.96435 * 16 15 14 19 19 N 1.31572 * 119.99830 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47037 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47147 * 119.99849 * 20 18 16 23 23 H 1.48492 * 109.47288 * 239.99966 * 20 18 16 24 24 C 1.38898 * 120.00229 * 359.77039 * 14 13 12 25 25 C 1.38001 * 120.00398 * 359.97438 * 24 14 13 26 26 H 1.08996 * 109.47307 * 300.00255 * 1 2 3 27 27 H 1.09004 * 109.47352 * 60.00027 * 1 2 3 28 28 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46966 * 305.00422 * 4 2 1 30 30 H 1.08997 * 109.46829 * 65.00127 * 4 2 1 31 31 H 1.09000 * 109.47244 * 299.99958 * 5 4 2 32 32 H 1.08998 * 109.47869 * 60.00133 * 5 4 2 33 33 H 0.96705 * 113.99923 * 179.97438 * 6 5 4 34 34 H 0.97003 * 119.99816 * 264.99705 * 7 2 1 35 35 H 0.97002 * 119.99241 * 355.76763 * 10 8 7 36 36 H 1.08002 * 119.99660 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.00147 * 180.22509 * 13 12 11 38 38 H 0.97004 * 120.00448 * 180.02562 * 19 18 16 39 39 H 1.08001 * 119.99908 * 179.97438 * 24 14 13 40 40 H 1.07997 * 120.00407 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3137 6 8 4.0411 -1.2873 2.4802 7 7 2.0183 -0.6906 -1.1961 8 6 2.1470 -0.0183 -2.3571 9 8 1.8583 1.1616 -2.4116 10 7 2.6016 -0.6523 -3.4562 11 6 2.6518 0.0215 -4.6826 12 6 2.4021 -0.6661 -5.8635 13 6 2.4467 -0.0009 -7.0720 14 6 2.7513 1.3538 -7.1081 15 8 2.8003 2.0071 -8.2975 16 6 3.2094 3.2914 -8.2740 17 1 3.4019 3.7796 -7.3300 18 6 3.3830 3.9855 -9.4614 19 7 3.1480 3.3909 -10.6113 20 14 3.9504 5.7649 -9.4288 21 1 4.1446 6.1968 -8.0213 22 1 5.2338 5.8887 -10.1655 23 1 2.9248 6.6235 -10.0736 24 6 3.0061 2.0402 -5.9278 25 6 2.9563 1.3763 -4.7190 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6053 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0727 0.4260 32 1 3.8532 0.4370 1.3574 33 1 5.0020 -1.2597 2.5856 34 1 2.2490 -1.6318 -1.1526 35 1 2.8940 -1.5753 -3.3975 36 1 2.1696 -1.7204 -5.8357 37 1 2.2490 -0.5347 -7.9898 38 1 3.2698 3.8764 -11.4423 39 1 3.2433 3.0935 -5.9560 40 1 3.1549 1.9099 -3.8012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323072336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:31 Heat of formation + Delta-G solvation = -109.785416 kcal Electronic energy + Delta-G solvation = -22791.949453 eV Core-core repulsion = 19185.462355 eV Total energy + Delta-G solvation = -3606.487098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66275 -40.51261 -38.78466 -37.96677 -36.60688 -35.39156 -34.18460 -32.59949 -31.81841 -29.96053 -29.18628 -27.24452 -24.56910 -23.93798 -23.32130 -21.98487 -21.68151 -20.09296 -19.47806 -18.92044 -18.36355 -17.90519 -16.88282 -16.60375 -16.25037 -16.02217 -15.71909 -15.54101 -15.40842 -15.22703 -15.09632 -14.63214 -14.22791 -14.06824 -13.70071 -13.53019 -13.19949 -13.14580 -12.87015 -12.83447 -12.71293 -12.41708 -12.10998 -12.04072 -11.91287 -11.44366 -11.27789 -10.93732 -10.89203 -10.52976 -10.11464 -9.81106 -8.55849 -8.46073 -6.12590 0.54971 0.61843 1.35284 1.42459 1.53255 1.63327 2.12932 2.18594 2.84669 3.16799 3.18269 3.26624 3.54175 3.97322 4.02897 4.11691 4.15421 4.23416 4.45684 4.49893 4.50729 4.59204 4.68445 4.74734 4.81328 4.89760 5.00890 5.08517 5.14482 5.16996 5.31131 5.37595 5.45069 5.55113 5.65321 5.73104 6.02182 6.05410 6.22337 6.85457 6.98850 7.08020 7.57654 7.79022 8.76960 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.002758 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.009500 B =10151.199931 C =10544.480708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.164 3.836 3 H 0.070 0.930 4 C -0.116 4.116 5 C 0.073 3.927 6 O -0.593 6.593 7 N -0.722 5.722 8 C 0.697 3.303 9 O -0.620 6.620 10 N -0.662 5.662 11 C 0.082 3.918 12 C -0.079 4.079 13 C -0.179 4.179 14 C 0.104 3.896 15 O -0.229 6.229 16 C -0.412 4.412 17 H 0.096 0.904 18 C -0.021 4.021 19 N -0.919 5.919 20 Si 1.016 2.984 21 H -0.256 1.256 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.228 4.228 25 C -0.076 4.076 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.397 0.603 34 H 0.413 0.587 35 H 0.422 0.578 36 H 0.167 0.833 37 H 0.128 0.872 38 H 0.273 0.727 39 H 0.115 0.885 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.405 -12.283 24.099 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.059 3.941 3 H 0.088 0.912 4 C -0.154 4.154 5 C -0.005 4.005 6 O -0.401 6.401 7 N -0.379 5.379 8 C 0.397 3.603 9 O -0.500 6.500 10 N -0.312 5.312 11 C -0.012 4.012 12 C -0.099 4.099 13 C -0.199 4.199 14 C 0.054 3.946 15 O -0.135 6.135 16 C -0.488 4.488 17 H 0.114 0.886 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.836 3.164 21 H -0.180 1.180 22 H -0.191 1.191 23 H -0.193 1.193 24 C -0.248 4.248 25 C -0.096 4.096 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.247 0.753 34 H 0.250 0.750 35 H 0.261 0.739 36 H 0.184 0.816 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.554 -11.396 23.777 26.372 hybrid contribution 1.000 0.426 -0.552 1.219 sum 0.445 -10.970 23.225 25.689 Atomic orbital electron populations 1.22143 0.94596 1.02946 1.02148 1.20752 0.94350 0.96546 0.82408 0.91218 1.21725 0.94335 1.02560 0.96783 1.22187 0.94983 0.95775 0.87509 1.86395 1.29201 1.78718 1.45786 1.45077 1.70905 1.14237 1.07672 1.16156 0.78076 0.84862 0.81159 1.90928 1.58174 1.16255 1.84603 1.42091 1.67181 1.16651 1.05293 1.17138 1.07195 0.91924 0.84962 1.20743 0.99263 1.00890 0.88997 1.20311 1.09240 0.90997 0.99357 1.19931 0.95525 0.93151 0.86016 1.83934 1.76434 1.26281 1.26882 1.21797 1.46356 0.85401 0.95262 0.88620 1.26517 0.96810 1.05146 0.93401 1.70183 1.47932 1.39357 0.98252 0.84561 0.78262 0.74197 0.79393 1.17962 1.19055 1.19256 1.21087 1.10689 1.00752 0.92294 1.20937 0.97658 0.94470 0.96572 0.90094 0.94608 0.90915 0.88965 0.89337 0.92904 0.93972 0.75312 0.75013 0.73946 0.81597 0.85359 0.91814 0.86764 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.48 71.98 0.68 -1.79 16 2 C 0.16 2.54 2.57 44.99 0.12 2.65 16 3 H 0.07 1.43 7.58 -2.38 -0.02 1.41 16 4 C -0.12 -1.25 5.12 30.59 0.16 -1.09 16 5 C 0.07 0.85 6.93 71.98 0.50 1.35 16 6 O -0.59 -7.36 13.66 -148.98 -2.04 -9.40 16 7 N -0.72 -11.39 4.53 -457.81 -2.08 -13.47 16 8 C 0.70 17.95 8.37 179.05 1.50 19.45 16 9 O -0.62 -22.46 13.44 -4.02 -0.05 -22.51 16 10 N -0.66 -15.48 5.35 -317.04 -1.69 -17.17 16 11 C 0.08 2.73 6.30 38.16 0.24 2.97 16 12 C -0.08 -2.50 9.96 22.38 0.22 -2.28 16 13 C -0.18 -7.42 9.99 22.38 0.22 -7.19 16 14 C 0.10 5.31 6.65 22.59 0.15 5.46 16 15 O -0.23 -13.97 9.76 -22.94 -0.22 -14.19 16 16 C -0.41 -24.69 9.48 67.91 0.64 -24.04 16 17 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 18 C -0.02 -1.23 5.49 84.82 0.47 -0.77 16 19 N -0.92 -56.93 13.67 21.61 0.30 -56.64 16 20 Si 1.02 44.14 29.55 68.60 2.03 46.17 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 C -0.23 -10.84 9.16 22.37 0.20 -10.63 16 25 C -0.08 -3.09 8.69 22.38 0.19 -2.90 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.55 7.75 -2.39 -0.02 0.53 16 32 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.40 1.78 9.12 -74.05 -0.68 1.11 16 34 H 0.41 3.58 8.62 -92.71 -0.80 2.79 16 35 H 0.42 5.88 8.84 -92.71 -0.82 5.07 16 36 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.11 5.63 5.63 -2.91 -0.02 5.61 16 40 H 0.13 5.14 6.22 -2.91 -0.02 5.12 16 Total: -1.00 -81.71 341.71 0.35 -81.37 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -1.19 Total: 24.65 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 5.30 Total: -18.81 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -3.47 Total: -87.28 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -2.31 Total: -46.10 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -81.71 0.35 -81.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323072336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.418 kcal (2) G-P(sol) polarization free energy of solvation -81.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds