Wall clock time and date at job start Tue Mar 31 2020 07:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47245 * 2 1 4 4 O 1.42903 * 109.47425 * 180.02562 * 3 2 1 5 5 N 1.41603 * 113.99924 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99817 * 180.02562 * 5 4 3 7 7 O 1.21584 * 119.99654 * 359.97438 * 6 5 4 8 8 N 1.34769 * 119.99808 * 180.02562 * 6 5 4 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08994 * 109.47413 * 59.99964 * 1 2 3 26 26 H 1.08996 * 109.46545 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46922 * 299.99225 * 1 2 3 28 28 H 1.09006 * 109.46650 * 240.00503 * 2 1 3 29 29 H 1.08997 * 109.47759 * 120.00716 * 2 1 3 30 30 H 1.09001 * 109.47240 * 60.00341 * 3 2 1 31 31 H 1.09006 * 109.47416 * 300.00801 * 3 2 1 32 32 H 0.96996 * 120.00091 * 359.97438 * 5 4 3 33 33 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 35 35 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4425 -0.0006 5 7 4.0450 2.7361 -0.0001 6 6 5.3853 2.8770 -0.0011 7 8 6.1000 1.8934 -0.0020 8 7 5.9334 4.1082 -0.0001 9 6 7.3905 4.2614 -0.0006 10 6 7.7415 5.7269 0.0002 11 6 7.9027 6.3973 1.1990 12 6 8.2249 7.7402 1.2031 13 6 8.3864 8.4176 0.0014 14 8 8.7036 9.7376 0.0022 15 6 8.9604 10.3048 1.1981 16 1 8.8296 9.7342 2.1056 17 6 9.3924 11.6208 1.2628 18 7 9.5523 12.3158 0.1572 19 14 9.7489 12.4064 2.9196 20 1 11.1725 12.1821 3.2778 21 1 9.4815 13.8651 2.8435 22 1 8.8761 11.7965 3.9547 23 6 8.2176 7.7432 -1.2008 24 6 7.9011 6.3989 -1.1981 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.4748 3.5208 0.0003 33 1 5.3633 4.8930 0.0010 34 1 7.8051 3.7893 -0.8912 35 1 7.8060 3.7876 0.8887 36 1 7.7774 5.8699 2.1331 37 1 8.3511 8.2630 2.1396 38 1 9.8541 13.2364 0.2025 39 1 8.3382 8.2683 -2.1367 40 1 7.7741 5.8728 -2.1326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326792621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:39 Heat of formation + Delta-G solvation = -32.401017 kcal Electronic energy + Delta-G solvation = -21978.491774 eV Core-core repulsion = 18375.360316 eV Total energy + Delta-G solvation = -3603.131458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88827 -39.09610 -37.86161 -36.82319 -34.41548 -34.32524 -32.44572 -31.81662 -30.29361 -29.50827 -26.49378 -25.78654 -24.58412 -22.21320 -22.07059 -21.12922 -20.65250 -18.72486 -18.20557 -18.05767 -17.00844 -16.52282 -15.51509 -15.42097 -15.03362 -14.69650 -14.60112 -14.38035 -13.98614 -13.86756 -13.66418 -13.44625 -13.03490 -12.81904 -12.78949 -12.54050 -12.17240 -11.81768 -11.68044 -11.63726 -11.41469 -11.00472 -10.97879 -10.80454 -10.71208 -10.50236 -10.22483 -9.45013 -9.21178 -8.93256 -8.79630 -8.30293 -7.35568 -6.54985 -4.13783 1.42041 2.11402 2.17468 3.07066 3.08517 3.12952 3.21777 3.82768 3.88835 4.28181 4.42842 4.46557 4.53467 4.78954 4.96239 4.99400 5.05663 5.13719 5.19416 5.22158 5.43224 5.50516 5.60081 5.65369 5.73309 5.80645 5.88846 6.10512 6.33741 6.49599 6.55744 6.58583 6.77918 6.81890 6.95532 7.13451 7.25861 7.33402 7.69540 7.89705 7.92528 8.60978 8.90363 9.58304 10.62457 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029319 B = 0.002209 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.780046 B =12672.776524 C =13006.828482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.030 3.970 4 O -0.131 6.131 5 N -0.619 5.619 6 C 0.718 3.282 7 O -0.578 6.578 8 N -0.729 5.729 9 C 0.201 3.799 10 C -0.216 4.216 11 C -0.049 4.049 12 C -0.238 4.238 13 C 0.161 3.839 14 O -0.173 6.173 15 C -0.394 4.394 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.196 4.196 24 C -0.052 4.052 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.403 0.597 33 H 0.398 0.602 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.271 0.729 39 H 0.118 0.882 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.661 -15.987 0.514 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.048 4.048 4 O -0.134 6.134 5 N -0.324 5.324 6 C 0.418 3.582 7 O -0.454 6.454 8 N -0.388 5.388 9 C 0.079 3.921 10 C -0.217 4.217 11 C -0.068 4.068 12 C -0.257 4.257 13 C 0.106 3.894 14 O -0.075 6.075 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.215 4.215 24 C -0.071 4.071 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.242 0.758 33 H 0.232 0.768 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.136 0.864 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.769 -16.685 0.265 21.634 hybrid contribution -0.707 1.287 0.876 1.710 sum -14.476 -15.397 1.141 21.164 Atomic orbital electron populations 1.21694 0.94000 1.02628 1.02260 1.21407 0.96086 0.94061 1.04060 1.23102 0.80753 0.99532 1.01364 1.90564 1.19598 1.05719 1.97520 1.46224 1.04420 0.98379 1.83420 1.15476 0.79798 0.84597 0.78320 1.90934 1.59818 1.37459 1.57186 1.45382 1.08515 1.05121 1.79807 1.19888 0.77032 0.93148 1.02069 1.19198 1.14272 0.94542 0.93704 1.20663 0.95957 0.93641 0.96497 1.21165 1.10933 0.95141 0.98497 1.19452 0.91621 0.84971 0.93334 1.83976 1.73807 1.16575 1.33181 1.21362 1.46446 0.96104 0.83052 0.88883 1.25327 0.96184 0.95557 0.99415 1.70033 1.42145 1.09992 1.27119 0.85689 0.79153 0.78509 0.79962 1.19768 1.20197 1.19139 1.20218 1.10787 0.94244 0.96296 1.20554 0.96754 0.93170 0.96648 0.92313 0.91612 0.92311 0.90589 0.90590 0.92076 0.92080 0.75820 0.76793 0.91420 0.91460 0.87290 0.85408 0.91858 0.86359 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.74 6.30 -26.73 -0.17 -0.91 16 3 C 0.03 0.22 6.23 37.16 0.23 0.46 16 4 O -0.13 -1.60 11.11 -29.62 -0.33 -1.93 16 5 N -0.62 -7.04 6.39 27.63 0.18 -6.86 16 6 C 0.72 10.42 8.71 -86.92 -0.76 9.66 16 7 O -0.58 -11.07 16.75 -12.86 -0.22 -11.29 16 8 N -0.73 -9.07 5.55 -66.42 -0.37 -9.44 16 9 C 0.20 2.79 5.80 -5.19 -0.03 2.76 16 10 C -0.22 -3.35 5.25 -104.58 -0.55 -3.90 16 11 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 12 C -0.24 -4.82 9.17 -39.39 -0.36 -5.18 16 13 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 14 O -0.17 -4.73 9.76 0.05 0.00 -4.73 16 15 C -0.39 -10.58 9.49 30.89 0.29 -10.28 16 16 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -24.43 13.67 55.48 0.76 -23.67 16 19 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 C -0.20 -3.86 9.99 -39.39 -0.39 -4.25 16 24 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.40 3.02 8.56 -40.82 -0.35 2.67 16 33 H 0.40 4.09 8.48 -40.82 -0.35 3.75 16 34 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.13 2.61 5.64 -52.49 -0.30 2.32 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -33.41 350.00 -7.68 -41.09 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.47 Total: 6.75 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.49 Total: -10.01 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.57 Total: -39.97 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.54 Total: -17.95 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.41 -7.68 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326792621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.692 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds