Wall clock time and date at job start Tue Mar 31 2020 07:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47245 * 2 1 4 4 O 1.42903 * 109.47425 * 180.02562 * 3 2 1 5 5 N 1.41603 * 113.99924 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99817 * 180.02562 * 5 4 3 7 7 O 1.21584 * 119.99654 * 359.97438 * 6 5 4 8 8 N 1.34769 * 119.99808 * 180.02562 * 6 5 4 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08994 * 109.47413 * 59.99964 * 1 2 3 26 26 H 1.08996 * 109.46545 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46922 * 299.99225 * 1 2 3 28 28 H 1.09006 * 109.46650 * 240.00503 * 2 1 3 29 29 H 1.08997 * 109.47759 * 120.00716 * 2 1 3 30 30 H 1.09001 * 109.47240 * 60.00341 * 3 2 1 31 31 H 1.09006 * 109.47416 * 300.00801 * 3 2 1 32 32 H 0.96996 * 120.00091 * 359.97438 * 5 4 3 33 33 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 35 35 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4425 -0.0006 5 7 4.0450 2.7361 -0.0001 6 6 5.3853 2.8770 -0.0011 7 8 6.1000 1.8934 -0.0020 8 7 5.9334 4.1082 -0.0001 9 6 7.3905 4.2614 -0.0006 10 6 7.7415 5.7269 0.0002 11 6 7.9027 6.3973 1.1990 12 6 8.2249 7.7402 1.2031 13 6 8.3864 8.4176 0.0014 14 8 8.7036 9.7376 0.0022 15 6 8.9604 10.3048 1.1981 16 1 8.8296 9.7342 2.1056 17 6 9.3924 11.6208 1.2628 18 7 9.5523 12.3158 0.1572 19 14 9.7489 12.4064 2.9196 20 1 11.1725 12.1821 3.2778 21 1 9.4815 13.8651 2.8435 22 1 8.8761 11.7965 3.9547 23 6 8.2176 7.7432 -1.2008 24 6 7.9011 6.3989 -1.1981 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.4748 3.5208 0.0003 33 1 5.3633 4.8930 0.0010 34 1 7.8051 3.7893 -0.8912 35 1 7.8060 3.7876 0.8887 36 1 7.7774 5.8699 2.1331 37 1 8.3511 8.2630 2.1396 38 1 9.8541 13.2364 0.2025 39 1 8.3382 8.2683 -2.1367 40 1 7.7741 5.8728 -2.1326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326792621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:38 Heat of formation + Delta-G solvation = -55.016650 kcal Electronic energy + Delta-G solvation = -21979.472461 eV Core-core repulsion = 18375.360316 eV Total energy + Delta-G solvation = -3604.112146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09824 -40.62341 -38.82337 -38.31598 -35.65266 -35.01257 -34.27807 -32.85661 -31.80707 -30.84950 -27.66481 -26.98301 -25.98403 -23.62379 -22.86102 -22.25416 -21.97721 -19.89172 -19.67477 -19.17694 -18.72378 -17.23452 -16.61135 -16.59326 -16.38886 -16.10855 -16.02980 -15.57499 -15.40765 -15.12650 -14.85406 -14.59140 -14.36503 -14.18215 -13.66705 -13.58209 -13.32318 -13.03172 -13.00094 -12.54051 -12.41464 -12.33513 -12.23388 -12.11112 -12.09679 -11.59065 -11.47808 -11.18732 -10.80030 -10.31925 -9.80079 -9.73804 -9.00853 -8.47524 -6.15506 0.35899 0.60297 0.82901 1.36801 1.45426 1.53571 2.09502 2.17812 2.69340 2.97633 3.22137 3.50797 3.62181 3.88530 3.94073 3.96370 4.06129 4.20086 4.29878 4.49269 4.54688 4.55138 4.59365 4.73943 4.79747 4.83273 5.06329 5.11361 5.16102 5.16515 5.29113 5.33193 5.40738 5.52074 5.64217 5.71189 5.77585 5.98310 6.02660 6.18306 6.97276 6.97728 7.55660 7.76944 8.75224 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.029319 B = 0.002209 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.780046 B =12672.776524 C =13006.828482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.025 3.975 4 O -0.161 6.161 5 N -0.605 5.605 6 C 0.717 3.283 7 O -0.627 6.627 8 N -0.716 5.716 9 C 0.206 3.794 10 C -0.181 4.181 11 C -0.043 4.043 12 C -0.245 4.245 13 C 0.123 3.877 14 O -0.229 6.229 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.017 2.983 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.205 4.205 24 C -0.041 4.041 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.422 0.578 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.273 0.727 39 H 0.115 0.885 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.330 -18.148 1.488 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.051 4.051 4 O -0.165 6.165 5 N -0.311 5.311 6 C 0.418 3.582 7 O -0.507 6.507 8 N -0.376 5.376 9 C 0.083 3.917 10 C -0.182 4.182 11 C -0.061 4.061 12 C -0.264 4.264 13 C 0.072 3.928 14 O -0.135 6.135 15 C -0.489 4.489 16 H 0.122 0.878 17 C -0.220 4.220 18 N -0.556 5.556 19 Si 0.837 3.163 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.175 1.175 23 C -0.225 4.225 24 C -0.059 4.059 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.265 0.735 33 H 0.248 0.752 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.514 -18.872 1.239 24.462 hybrid contribution -0.361 1.548 0.469 1.657 sum -15.876 -17.324 1.707 23.560 Atomic orbital electron populations 1.21675 0.92303 1.03267 1.02870 1.21446 0.97395 0.93342 1.03392 1.23379 0.78479 1.00477 1.02800 1.90557 1.22247 1.06058 1.97663 1.45963 1.03863 0.99213 1.82032 1.15546 0.80451 0.84205 0.78019 1.90908 1.61278 1.39073 1.59440 1.45040 1.08066 1.05187 1.79321 1.19791 0.77939 0.91219 1.02764 1.19436 1.10631 0.95244 0.92937 1.20959 0.94528 0.92188 0.98448 1.21250 1.11226 0.96561 0.97358 1.20014 0.92994 0.84341 0.95424 1.83947 1.77018 1.18938 1.33628 1.21833 1.46646 0.96772 0.83636 0.87841 1.26576 0.95872 0.95929 1.03620 1.70176 1.45119 1.10513 1.29830 0.84597 0.79303 0.77397 0.75013 1.19003 1.19726 1.17505 1.20451 1.10970 0.95658 0.95371 1.20901 0.94784 0.91648 0.98576 0.91681 0.91021 0.91693 0.91298 0.91316 0.90589 0.90567 0.73540 0.75215 0.90804 0.91049 0.84174 0.86184 0.91832 0.86678 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.91 71.98 0.71 -0.23 16 2 C -0.12 -1.29 6.30 30.59 0.19 -1.10 16 3 C 0.03 0.32 6.23 71.98 0.45 0.77 16 4 O -0.16 -3.63 11.11 -21.44 -0.24 -3.87 16 5 N -0.61 -12.10 6.39 -184.75 -1.18 -13.29 16 6 C 0.72 18.88 8.71 179.06 1.56 20.44 16 7 O -0.63 -22.87 16.75 13.37 0.22 -22.65 16 8 N -0.72 -15.18 5.55 -482.31 -2.68 -17.86 16 9 C 0.21 4.89 5.80 85.63 0.50 5.39 16 10 C -0.18 -4.98 5.25 -19.84 -0.10 -5.09 16 11 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 12 C -0.24 -9.80 9.17 22.39 0.21 -9.60 16 13 C 0.12 5.75 6.65 22.58 0.15 5.90 16 14 O -0.23 -13.24 9.76 -22.72 -0.22 -13.46 16 15 C -0.41 -23.16 9.49 67.92 0.64 -22.52 16 16 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 17 C -0.02 -1.22 5.49 84.84 0.47 -0.76 16 18 N -0.92 -55.06 13.67 21.62 0.30 -54.76 16 19 Si 1.02 41.59 29.55 68.60 2.03 43.62 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 23 C -0.21 -8.01 9.99 22.39 0.22 -7.79 16 24 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 25 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.42 4.91 8.56 -92.71 -0.79 4.12 16 33 H 0.41 6.74 8.48 -92.71 -0.79 5.96 16 34 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 35 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 36 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 37 H 0.12 4.94 5.64 -2.91 -0.02 4.92 16 38 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -77.12 350.00 3.15 -73.97 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.51 Total: 24.96 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 5.43 Total: -16.67 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -3.56 Total: -85.91 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.24 Total: -39.98 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -77.12 3.15 -73.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326792621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.952 kcal (2) G-P(sol) polarization free energy of solvation -77.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds