Wall clock time and date at job start Tue Mar 31 2020 07:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99805 * 2 1 4 4 H 1.08997 * 109.47164 * 30.00037 * 3 2 1 5 5 C 1.53000 * 109.46943 * 269.99834 * 3 2 1 6 6 C 1.53000 * 109.47292 * 149.99876 * 3 2 1 7 7 N 1.46495 * 109.47297 * 299.99937 * 6 3 2 8 8 C 1.34776 * 120.00342 * 179.72309 * 7 6 3 9 9 O 1.21594 * 119.99482 * 0.27796 * 8 7 6 10 10 N 1.34775 * 120.00312 * 180.27864 * 8 7 6 11 11 C 1.40025 * 120.00034 * 175.49756 * 10 8 7 12 12 C 1.38908 * 119.99976 * 214.85013 * 11 10 8 13 13 C 1.38010 * 120.00064 * 179.81214 * 12 11 10 14 14 C 1.38909 * 119.99891 * 0.43768 * 13 12 11 15 15 O 1.35779 * 119.99506 * 179.77017 * 14 13 12 16 16 C 1.34815 * 116.99661 * 185.36613 * 15 14 13 17 17 H 1.08000 * 120.00264 * 354.96248 * 16 15 14 18 18 C 1.38632 * 120.00115 * 174.96438 * 16 15 14 19 19 N 1.31573 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99957 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47571 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.47281 * 119.99924 * 20 18 16 23 23 H 1.48494 * 109.47505 * 240.00083 * 20 18 16 24 24 C 1.38901 * 119.99847 * 359.79177 * 14 13 12 25 25 C 1.37999 * 120.00452 * 359.97438 * 24 14 13 26 26 H 1.09000 * 109.47122 * 300.00039 * 1 2 3 27 27 H 1.08994 * 109.47300 * 60.00147 * 1 2 3 28 28 H 1.09008 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46852 * 60.00438 * 5 3 2 30 30 H 1.09008 * 109.47150 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.47356 * 300.00085 * 5 3 2 32 32 H 1.08997 * 109.47154 * 179.97438 * 6 3 2 33 33 H 1.08997 * 109.46885 * 59.99990 * 6 3 2 34 34 H 0.97002 * 119.99997 * 359.97438 * 7 6 3 35 35 H 0.96997 * 120.00105 * 355.49082 * 10 8 7 36 36 H 1.08002 * 119.99959 * 359.97438 * 12 11 10 37 37 H 1.07996 * 120.00137 * 180.18945 * 13 12 11 38 38 H 0.96996 * 119.99808 * 179.97438 * 19 18 16 39 39 H 1.08005 * 119.99216 * 179.97438 * 24 14 13 40 40 H 1.08006 * 120.00057 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 3.3588 1.2634 0.7213 7 7 3.1602 0.8173 2.1025 8 6 4.2168 0.6983 2.9307 9 8 5.3342 0.9661 2.5330 10 7 4.0348 0.2826 4.1998 11 6 5.1405 0.0684 5.0318 12 6 5.1161 -0.9562 5.9694 13 6 6.2074 -1.1697 6.7867 14 6 7.3267 -0.3542 6.6780 15 8 8.3985 -0.5614 7.4854 16 6 9.4056 0.3313 7.4068 17 1 9.3737 1.1177 6.6672 18 6 10.4823 0.2401 8.2753 19 7 10.5210 -0.7176 9.1767 20 14 11.8780 1.4767 8.1659 21 1 11.5961 2.4464 7.0771 22 1 11.9984 2.2028 9.4557 23 1 13.1489 0.7646 7.8783 24 6 7.3492 0.6733 5.7437 25 6 6.2599 0.8838 4.9231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.2568 1.8014 -1.9563 30 1 2.6605 2.7674 -1.4426 31 1 2.8828 1.0775 -1.9563 32 1 3.8023 2.2590 0.7209 33 1 4.0241 0.5695 0.2074 34 1 2.2688 0.6041 2.4198 35 1 3.1378 0.1318 4.5368 36 1 4.2441 -1.5874 6.0570 37 1 6.1897 -1.9682 7.5136 38 1 11.2745 -0.7817 9.7842 39 1 8.2194 1.3076 5.6595 40 1 6.2773 1.6831 4.1969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327754760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:25 Heat of formation + Delta-G solvation = -70.746237 kcal Electronic energy + Delta-G solvation = -22619.662732 eV Core-core repulsion = 19014.868500 eV Total energy + Delta-G solvation = -3604.794232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30297 -38.99650 -38.48477 -36.59005 -34.74086 -33.88630 -32.20979 -31.84618 -30.11707 -28.08902 -27.18445 -26.01649 -25.09678 -22.37762 -21.87972 -21.49822 -20.36452 -18.46095 -17.85874 -17.41066 -17.27437 -16.53631 -15.73109 -15.58298 -15.30528 -14.74299 -14.43789 -14.28787 -14.04959 -13.54541 -13.49183 -13.37815 -13.02969 -12.84200 -12.79297 -12.59642 -12.41670 -11.84436 -11.67821 -11.50030 -11.44392 -11.17306 -10.99121 -10.68008 -10.37380 -10.15921 -9.88897 -9.62032 -9.12774 -9.10908 -8.62662 -8.12389 -6.84417 -6.38721 -3.96044 2.21990 2.32639 2.74859 3.16589 3.19286 3.24999 3.27354 3.41730 4.02938 4.27000 4.36584 4.58624 4.65655 4.71994 4.87430 4.93389 5.15842 5.19304 5.25362 5.31894 5.33127 5.40704 5.60214 5.72949 5.75330 5.82771 6.20468 6.25843 6.33750 6.43978 6.72740 6.74976 6.81544 7.03664 7.18198 7.27351 7.41369 7.51783 7.86853 8.06739 8.12097 8.74717 9.07502 9.77954 10.79560 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034309 B = 0.002580 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.909899 B =10851.244559 C =11542.691582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.073 3.927 4 H 0.067 0.933 5 C -0.173 4.173 6 C 0.143 3.857 7 N -0.744 5.744 8 C 0.699 3.301 9 O -0.576 6.576 10 N -0.675 5.675 11 C 0.054 3.946 12 C -0.096 4.096 13 C -0.178 4.178 14 C 0.145 3.855 15 O -0.179 6.179 16 C -0.388 4.388 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.219 4.219 25 C -0.065 4.065 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.395 0.605 35 H 0.397 0.603 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.268 0.732 39 H 0.130 0.870 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.675 4.505 -16.057 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C 0.015 3.985 4 H 0.085 0.915 5 C -0.231 4.231 6 C 0.018 3.982 7 N -0.401 5.401 8 C 0.400 3.600 9 O -0.453 6.453 10 N -0.322 5.322 11 C -0.039 4.039 12 C -0.116 4.116 13 C -0.198 4.198 14 C 0.091 3.909 15 O -0.083 6.083 16 C -0.465 4.465 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.239 4.239 25 C -0.085 4.085 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.078 0.922 39 H 0.148 0.852 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.314 4.340 -16.121 25.529 hybrid contribution -0.470 0.636 0.141 0.804 sum -19.784 4.976 -15.980 25.914 Atomic orbital electron populations 1.22818 0.81051 1.02944 0.99931 1.88006 1.19603 1.27271 1.95060 1.22422 0.94586 0.85189 0.96286 0.91499 1.22203 1.02813 1.02218 0.95821 1.21307 0.95483 1.00992 0.80394 1.44924 1.09075 1.74012 1.12044 1.15939 0.84565 0.78845 0.80654 1.90935 1.22443 1.55974 1.75955 1.42272 1.08699 1.71007 1.10247 1.17047 0.89541 0.99856 0.97450 1.20326 0.98163 0.96027 0.97094 1.19968 0.92361 1.03282 1.04160 1.19406 0.88115 0.93044 0.90345 1.83974 1.23233 1.47400 1.53648 1.21380 0.97278 1.09164 1.18664 0.89001 1.25274 0.98355 0.97902 0.95081 1.70057 1.30893 1.30791 1.18256 0.85651 0.79892 0.79412 0.78519 1.19067 1.20214 1.20195 1.21111 1.00313 1.02537 0.99965 1.20883 0.92301 0.97827 0.97457 0.93981 0.94051 0.89497 0.92007 0.91042 0.91180 0.90173 0.90692 0.77174 0.76922 0.86824 0.86099 0.92172 0.85249 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.16 10.09 -35.23 -0.36 -3.51 16 3 C 0.07 0.51 2.81 -26.73 -0.08 0.44 16 4 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 5 C -0.17 -1.00 9.53 37.16 0.35 -0.65 16 6 C 0.14 1.39 5.37 -4.04 -0.02 1.37 16 7 N -0.74 -8.05 5.45 -65.23 -0.36 -8.41 16 8 C 0.70 10.73 8.41 -86.92 -0.73 10.00 16 9 O -0.58 -11.38 13.78 5.28 0.07 -11.30 16 10 N -0.67 -9.75 5.35 -14.18 -0.08 -9.82 16 11 C 0.05 1.00 6.30 -83.62 -0.53 0.47 16 12 C -0.10 -1.72 9.96 -39.42 -0.39 -2.12 16 13 C -0.18 -3.80 9.99 -39.42 -0.39 -4.19 16 14 C 0.14 3.61 6.65 -39.09 -0.26 3.35 16 15 O -0.18 -5.21 9.76 0.00 0.00 -5.21 16 16 C -0.39 -11.14 9.48 30.88 0.29 -10.84 16 17 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 20 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.22 -5.12 9.16 -39.42 -0.36 -5.48 16 25 C -0.06 -1.36 8.69 -39.42 -0.34 -1.70 16 26 H 0.04 0.17 8.08 -51.93 -0.42 -0.25 16 27 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 28 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 30 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.39 3.18 8.37 -40.82 -0.34 2.84 16 35 H 0.40 4.13 8.84 -40.82 -0.36 3.77 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.13 3.04 5.63 -52.48 -0.30 2.74 16 40 H 0.13 2.66 6.22 -52.48 -0.33 2.33 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -35.06 342.61 -6.61 -41.67 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.33 Total: 7.52 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.46 Total: -7.15 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.33 Total: -43.23 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.28 Total: -20.03 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.06 -6.61 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327754760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.076 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds