Wall clock time and date at job start Tue Mar 31 2020 07:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99805 * 2 1 4 4 H 1.08997 * 109.47164 * 30.00037 * 3 2 1 5 5 C 1.53000 * 109.46943 * 269.99834 * 3 2 1 6 6 C 1.53000 * 109.47292 * 149.99876 * 3 2 1 7 7 N 1.46495 * 109.47297 * 299.99937 * 6 3 2 8 8 C 1.34776 * 120.00342 * 179.72309 * 7 6 3 9 9 O 1.21594 * 119.99482 * 0.27796 * 8 7 6 10 10 N 1.34775 * 120.00312 * 180.27864 * 8 7 6 11 11 C 1.40025 * 120.00034 * 175.49756 * 10 8 7 12 12 C 1.38908 * 119.99976 * 214.85013 * 11 10 8 13 13 C 1.38010 * 120.00064 * 179.81214 * 12 11 10 14 14 C 1.38909 * 119.99891 * 0.43768 * 13 12 11 15 15 O 1.35779 * 119.99506 * 179.77017 * 14 13 12 16 16 C 1.34815 * 116.99661 * 185.36613 * 15 14 13 17 17 H 1.08000 * 120.00264 * 354.96248 * 16 15 14 18 18 C 1.38632 * 120.00115 * 174.96438 * 16 15 14 19 19 N 1.31573 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99957 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47571 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.47281 * 119.99924 * 20 18 16 23 23 H 1.48494 * 109.47505 * 240.00083 * 20 18 16 24 24 C 1.38901 * 119.99847 * 359.79177 * 14 13 12 25 25 C 1.37999 * 120.00452 * 359.97438 * 24 14 13 26 26 H 1.09000 * 109.47122 * 300.00039 * 1 2 3 27 27 H 1.08994 * 109.47300 * 60.00147 * 1 2 3 28 28 H 1.09008 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46852 * 60.00438 * 5 3 2 30 30 H 1.09008 * 109.47150 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.47356 * 300.00085 * 5 3 2 32 32 H 1.08997 * 109.47154 * 179.97438 * 6 3 2 33 33 H 1.08997 * 109.46885 * 59.99990 * 6 3 2 34 34 H 0.97002 * 119.99997 * 359.97438 * 7 6 3 35 35 H 0.96997 * 120.00105 * 355.49082 * 10 8 7 36 36 H 1.08002 * 119.99959 * 359.97438 * 12 11 10 37 37 H 1.07996 * 120.00137 * 180.18945 * 13 12 11 38 38 H 0.96996 * 119.99808 * 179.97438 * 19 18 16 39 39 H 1.08005 * 119.99216 * 179.97438 * 24 14 13 40 40 H 1.08006 * 120.00057 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 3.3588 1.2634 0.7213 7 7 3.1602 0.8173 2.1025 8 6 4.2168 0.6983 2.9307 9 8 5.3342 0.9661 2.5330 10 7 4.0348 0.2826 4.1998 11 6 5.1405 0.0684 5.0318 12 6 5.1161 -0.9562 5.9694 13 6 6.2074 -1.1697 6.7867 14 6 7.3267 -0.3542 6.6780 15 8 8.3985 -0.5614 7.4854 16 6 9.4056 0.3313 7.4068 17 1 9.3737 1.1177 6.6672 18 6 10.4823 0.2401 8.2753 19 7 10.5210 -0.7176 9.1767 20 14 11.8780 1.4767 8.1659 21 1 11.5961 2.4464 7.0771 22 1 11.9984 2.2028 9.4557 23 1 13.1489 0.7646 7.8783 24 6 7.3492 0.6733 5.7437 25 6 6.2599 0.8838 4.9231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.2568 1.8014 -1.9563 30 1 2.6605 2.7674 -1.4426 31 1 2.8828 1.0775 -1.9563 32 1 3.8023 2.2590 0.7209 33 1 4.0241 0.5695 0.2074 34 1 2.2688 0.6041 2.4198 35 1 3.1378 0.1318 4.5368 36 1 4.2441 -1.5874 6.0570 37 1 6.1897 -1.9682 7.5136 38 1 11.2745 -0.7817 9.7842 39 1 8.2194 1.3076 5.6595 40 1 6.2773 1.6831 4.1969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327754760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:24 Heat of formation + Delta-G solvation = -97.261910 kcal Electronic energy + Delta-G solvation = -22620.812538 eV Core-core repulsion = 19014.868500 eV Total energy + Delta-G solvation = -3605.944038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62401 -40.48918 -39.38906 -38.22390 -35.75017 -35.38057 -34.15074 -32.63971 -31.82256 -29.57944 -27.74350 -27.32162 -26.61338 -23.96337 -23.17928 -22.45601 -21.72524 -20.05175 -19.42588 -18.93005 -18.18396 -17.84004 -16.75891 -16.57882 -16.24686 -16.20384 -15.94356 -15.60628 -15.46467 -15.22677 -14.94439 -14.63711 -14.30911 -13.99573 -13.67104 -13.54058 -13.36879 -13.20933 -13.15548 -13.01004 -12.70673 -12.41786 -12.29369 -12.10459 -11.70798 -11.47290 -11.31199 -10.93983 -10.61481 -10.54410 -10.11139 -9.81041 -8.55813 -8.45549 -6.12029 0.55092 0.61782 1.35703 1.42940 1.53766 1.61424 2.11184 2.19116 2.78210 2.84943 3.17048 3.24898 3.54261 3.77557 4.04611 4.11957 4.15627 4.21317 4.50791 4.52600 4.57456 4.60339 4.68218 4.70044 4.78316 4.81639 4.94534 4.97507 5.08875 5.15915 5.26360 5.37108 5.42780 5.46398 5.64422 5.73029 6.00406 6.05013 6.21754 6.26036 6.99285 7.05263 7.54502 7.79339 8.77464 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034309 B = 0.002580 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.909899 B =10851.244559 C =11542.691582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.081 3.919 4 H 0.089 0.911 5 C -0.171 4.171 6 C 0.139 3.861 7 N -0.721 5.721 8 C 0.696 3.304 9 O -0.623 6.623 10 N -0.662 5.662 11 C 0.081 3.919 12 C -0.079 4.079 13 C -0.179 4.179 14 C 0.105 3.895 15 O -0.228 6.228 16 C -0.412 4.412 17 H 0.097 0.903 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.017 2.983 21 H -0.256 1.256 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.228 4.228 25 C -0.076 4.076 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.413 0.587 35 H 0.422 0.578 36 H 0.167 0.833 37 H 0.129 0.871 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.687 5.246 -17.544 29.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.325 6.325 3 C 0.023 3.977 4 H 0.107 0.893 5 C -0.229 4.229 6 C 0.015 3.985 7 N -0.378 5.378 8 C 0.396 3.604 9 O -0.503 6.503 10 N -0.311 5.311 11 C -0.014 4.014 12 C -0.099 4.099 13 C -0.198 4.198 14 C 0.054 3.946 15 O -0.135 6.135 16 C -0.488 4.488 17 H 0.114 0.886 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.836 3.164 21 H -0.180 1.180 22 H -0.190 1.190 23 H -0.193 1.193 24 C -0.248 4.248 25 C -0.097 4.097 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.249 0.751 35 H 0.261 0.739 36 H 0.184 0.816 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.462 5.080 -17.655 29.019 hybrid contribution 0.095 0.375 0.371 0.536 sum -22.367 5.455 -17.284 28.789 Atomic orbital electron populations 1.22989 0.79464 1.03681 1.01137 1.87971 1.21395 1.27911 1.95242 1.22375 0.93223 0.85399 0.96695 0.89295 1.22200 1.03326 1.02350 0.95041 1.21441 0.97179 1.00336 0.79591 1.44759 1.08789 1.72394 1.11823 1.16148 0.84775 0.78464 0.81015 1.90922 1.24687 1.57855 1.76813 1.42059 1.08791 1.70597 1.09685 1.17161 0.89533 0.98109 0.96550 1.20741 0.98490 0.95624 0.95030 1.20310 0.92142 1.02701 1.04694 1.19928 0.88692 0.94936 0.91039 1.83936 1.24735 1.48796 1.56005 1.21802 0.98026 1.09661 1.19335 0.88605 1.26528 1.00963 1.00055 0.94379 1.70184 1.32360 1.33313 1.19836 0.84555 0.75958 0.76749 0.79102 1.17979 1.19035 1.19253 1.21089 1.00856 1.02343 1.00485 1.20942 0.92809 0.98705 0.97224 0.92521 0.93083 0.89114 0.90733 0.90091 0.92422 0.90051 0.92859 0.75080 0.73942 0.81603 0.85264 0.91817 0.86653 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.41 -5.63 10.09 -148.98 -1.50 -7.13 16 3 C 0.08 0.91 2.81 30.59 0.09 1.00 16 4 H 0.09 0.63 7.79 -2.39 -0.02 0.61 16 5 C -0.17 -1.61 9.53 71.98 0.69 -0.92 16 6 C 0.14 2.45 5.37 86.38 0.46 2.91 16 7 N -0.72 -13.53 5.45 -478.55 -2.61 -16.14 16 8 C 0.70 19.66 8.41 179.06 1.51 21.17 16 9 O -0.62 -24.01 13.78 -4.01 -0.06 -24.06 16 10 N -0.66 -16.74 5.35 -317.04 -1.69 -18.43 16 11 C 0.08 2.79 6.30 38.15 0.24 3.03 16 12 C -0.08 -2.58 9.96 22.38 0.22 -2.36 16 13 C -0.18 -7.53 9.99 22.38 0.22 -7.30 16 14 C 0.10 5.40 6.65 22.59 0.15 5.55 16 15 O -0.23 -14.04 9.76 -22.92 -0.22 -14.26 16 16 C -0.41 -24.86 9.48 67.91 0.64 -24.21 16 17 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 18 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 19 N -0.92 -57.18 13.67 21.61 0.30 -56.89 16 20 Si 1.02 44.44 29.55 68.60 2.03 46.46 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 24 C -0.23 -10.99 9.16 22.37 0.20 -10.79 16 25 C -0.08 -3.20 8.69 22.38 0.19 -3.00 16 26 H 0.06 0.25 8.08 -2.39 -0.02 0.23 16 27 H 0.05 0.28 7.87 -2.39 -0.02 0.26 16 28 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 0.53 7.87 -2.39 -0.02 0.51 16 30 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.41 4.98 8.37 -92.71 -0.78 4.20 16 35 H 0.42 6.67 8.84 -92.71 -0.82 5.85 16 36 H 0.17 3.78 8.06 -2.91 -0.02 3.75 16 37 H 0.13 5.16 8.06 -2.91 -0.02 5.14 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.12 5.75 5.63 -2.91 -0.02 5.73 16 40 H 0.13 5.28 6.22 -2.91 -0.02 5.27 16 Total: -1.00 -81.37 342.61 2.04 -79.33 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.51 Total: 25.46 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 6.31 Total: -14.34 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -4.01 Total: -91.46 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.78 Total: -45.46 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -81.37 2.04 -79.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327754760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.927 kcal (2) G-P(sol) polarization free energy of solvation -81.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds