Wall clock time and date at job start Tue Mar 31 2020 07:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99780 * 2 1 4 4 H 1.09000 * 109.47306 * 330.00148 * 3 2 1 5 5 C 1.53004 * 109.46792 * 90.00270 * 3 2 1 6 6 C 1.53000 * 109.47128 * 210.00189 * 3 2 1 7 7 N 1.46495 * 109.47297 * 65.00212 * 6 3 2 8 8 C 1.34776 * 120.00342 * 179.72309 * 7 6 3 9 9 O 1.21594 * 119.99482 * 0.27796 * 8 7 6 10 10 N 1.34775 * 120.00312 * 180.27864 * 8 7 6 11 11 C 1.40025 * 120.00034 * 175.49756 * 10 8 7 12 12 C 1.38908 * 119.99976 * 214.85013 * 11 10 8 13 13 C 1.38010 * 120.00064 * 179.81214 * 12 11 10 14 14 C 1.38909 * 119.99891 * 0.43768 * 13 12 11 15 15 O 1.35779 * 119.99506 * 179.77017 * 14 13 12 16 16 C 1.34815 * 116.99661 * 185.36613 * 15 14 13 17 17 H 1.08000 * 120.00264 * 354.96248 * 16 15 14 18 18 C 1.38632 * 120.00115 * 174.96438 * 16 15 14 19 19 N 1.31573 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99957 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47199 * 59.99904 * 20 18 16 22 22 H 1.48500 * 109.47278 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47407 * 299.99958 * 20 18 16 24 24 C 1.38901 * 119.99847 * 359.79177 * 14 13 12 25 25 C 1.37999 * 120.00452 * 359.97438 * 24 14 13 26 26 H 1.09000 * 109.47542 * 59.99826 * 1 2 3 27 27 H 1.09005 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47299 * 299.99547 * 1 2 3 29 29 H 1.08997 * 109.47235 * 299.99903 * 5 3 2 30 30 H 1.09000 * 109.47295 * 59.99871 * 5 3 2 31 31 H 1.09001 * 109.46792 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47154 * 305.00179 * 6 3 2 33 33 H 1.08997 * 109.46885 * 185.00265 * 6 3 2 34 34 H 0.97002 * 119.99997 * 359.97438 * 7 6 3 35 35 H 0.96997 * 120.00105 * 355.49082 * 10 8 7 36 36 H 1.08002 * 119.99959 * 359.97438 * 12 11 10 37 37 H 1.07996 * 120.00137 * 180.18945 * 13 12 11 38 38 H 0.96996 * 119.99808 * 179.97438 * 19 18 16 39 39 H 1.08005 * 119.99216 * 179.97438 * 24 14 13 40 40 H 1.08006 * 120.00057 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7713 1.4426 6 6 3.3588 1.2634 -0.7213 7 7 3.1476 0.9333 -2.1328 8 6 4.2007 0.8458 -2.9694 9 8 5.3266 1.0359 -2.5514 10 7 4.0059 0.5476 -4.2692 11 6 5.0881 0.5492 -5.1578 12 6 4.9072 0.9616 -6.4718 13 6 5.9747 0.9669 -7.3465 14 6 7.2280 0.5512 -6.9153 15 8 8.2772 0.5520 -7.7772 16 6 9.4380 0.0333 -7.3289 17 1 9.5262 -0.2837 -6.3002 18 6 10.5184 -0.0932 -8.1882 19 7 10.4109 0.2925 -9.4415 20 14 12.1269 -0.8113 -7.5667 21 1 11.8951 -2.1936 -7.0759 22 1 13.1170 -0.8390 -8.6732 23 1 12.6474 0.0271 -6.4571 24 6 7.4078 0.1343 -5.6026 25 6 6.3415 0.1335 -4.7266 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.2569 1.8014 1.9564 30 1 2.8829 1.0774 1.9564 31 1 2.6614 2.7669 1.4426 32 1 3.9931 0.5053 -0.2618 33 1 3.8426 2.2371 -0.6443 34 1 2.2495 0.7812 -2.4662 35 1 3.1160 0.3318 -4.5892 36 1 3.9318 1.2806 -6.8083 37 1 5.8348 1.2905 -8.3673 38 1 11.1669 0.2043 -10.0427 39 1 8.3822 -0.1893 -5.2676 40 1 6.4813 -0.1910 -3.7060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330118674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:28 Heat of formation + Delta-G solvation = -70.683387 kcal Electronic energy + Delta-G solvation = -22606.615914 eV Core-core repulsion = 19001.824408 eV Total energy + Delta-G solvation = -3604.791506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30573 -38.99400 -38.48716 -36.59462 -34.75709 -33.88909 -32.20780 -31.84037 -30.11927 -28.09079 -27.19095 -26.01192 -25.09376 -22.37681 -21.88994 -21.50884 -20.36726 -18.46671 -17.86118 -17.41019 -17.26089 -16.53615 -15.74088 -15.59035 -15.27326 -14.76955 -14.46535 -14.36304 -13.91294 -13.55654 -13.52497 -13.36690 -13.03998 -12.87270 -12.77778 -12.59545 -12.40494 -11.84451 -11.67823 -11.51037 -11.44330 -11.16628 -10.95445 -10.70818 -10.40553 -10.16173 -9.88965 -9.62373 -9.13233 -9.11515 -8.62150 -8.12633 -6.84724 -6.38432 -3.95922 2.21447 2.32196 2.75737 3.19080 3.19173 3.22531 3.26801 3.41281 4.03275 4.26486 4.36068 4.59203 4.65091 4.71733 4.87347 4.93472 5.15860 5.19437 5.25442 5.31626 5.32860 5.40896 5.60308 5.72857 5.74767 5.82639 6.20056 6.25662 6.33331 6.43748 6.72629 6.74432 6.81201 7.03384 7.17740 7.26742 7.41157 7.51703 7.86635 8.06689 8.11497 8.74235 9.07524 9.77704 10.79641 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.002569 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.956621 B =10895.957540 C =11465.627550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.381 6.381 3 C 0.073 3.927 4 H 0.067 0.933 5 C -0.172 4.172 6 C 0.143 3.857 7 N -0.745 5.745 8 C 0.699 3.301 9 O -0.576 6.576 10 N -0.675 5.675 11 C 0.053 3.947 12 C -0.096 4.096 13 C -0.178 4.178 14 C 0.145 3.855 15 O -0.178 6.178 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.270 1.270 24 C -0.219 4.219 25 C -0.064 4.064 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.394 0.606 35 H 0.397 0.603 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.270 0.730 39 H 0.130 0.870 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.263 1.328 16.868 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.015 3.985 4 H 0.085 0.915 5 C -0.230 4.230 6 C 0.018 3.982 7 N -0.401 5.401 8 C 0.400 3.600 9 O -0.453 6.453 10 N -0.322 5.322 11 C -0.039 4.039 12 C -0.116 4.116 13 C -0.198 4.198 14 C 0.091 3.909 15 O -0.082 6.082 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.239 4.239 25 C -0.084 4.084 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.228 0.772 35 H 0.231 0.769 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.147 0.853 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.926 1.445 16.848 25.380 hybrid contribution -0.380 -0.288 0.107 0.489 sum -19.306 1.156 16.954 25.719 Atomic orbital electron populations 1.22813 0.81057 1.02929 0.99926 1.88007 1.19607 1.27292 1.95075 1.22418 0.94601 0.85171 0.96295 0.91487 1.22200 1.02809 1.02226 0.95805 1.21304 0.95405 1.02065 0.79419 1.44956 1.08488 1.77381 1.09320 1.15938 0.84717 0.78321 0.81027 1.90936 1.21626 1.56743 1.75968 1.42275 1.10595 1.72608 1.06745 1.17044 0.87701 1.09724 0.89479 1.20318 0.98128 1.00923 0.92249 1.19963 0.90355 1.09426 1.00066 1.19406 0.88606 0.93426 0.89478 1.83972 1.17024 1.69932 1.37255 1.21284 0.86847 1.41264 0.97209 0.89102 1.25268 0.99113 0.97146 0.95018 1.70038 1.31821 1.44078 1.04078 0.85790 0.79951 0.79447 0.78310 1.19517 1.20348 1.19495 1.21110 0.99832 1.09341 0.93638 1.20893 0.91266 0.96831 0.99436 0.93987 0.89516 0.94053 0.92000 0.91188 0.91031 0.90634 0.90111 0.77244 0.76918 0.86852 0.86110 0.92066 0.85252 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.16 10.29 -35.23 -0.36 -3.52 16 3 C 0.07 0.51 2.75 -26.73 -0.07 0.44 16 4 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 5 C -0.17 -1.00 9.53 37.16 0.35 -0.65 16 6 C 0.14 1.39 5.34 -4.04 -0.02 1.37 16 7 N -0.75 -8.02 5.51 -65.23 -0.36 -8.38 16 8 C 0.70 10.70 8.41 -86.92 -0.73 9.97 16 9 O -0.58 -11.36 13.78 5.28 0.07 -11.29 16 10 N -0.67 -9.72 5.35 -14.18 -0.08 -9.80 16 11 C 0.05 0.99 6.30 -83.62 -0.53 0.46 16 12 C -0.10 -1.71 9.96 -39.42 -0.39 -2.11 16 13 C -0.18 -3.79 9.99 -39.42 -0.39 -4.19 16 14 C 0.14 3.60 6.65 -39.09 -0.26 3.34 16 15 O -0.18 -5.19 9.76 0.00 0.00 -5.19 16 16 C -0.39 -11.17 9.48 30.88 0.29 -10.88 16 17 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 20 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.22 -5.12 9.16 -39.42 -0.36 -5.48 16 25 C -0.06 -1.35 8.69 -39.42 -0.34 -1.70 16 26 H 0.04 0.17 8.08 -51.93 -0.42 -0.25 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 29 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.39 3.12 8.49 -40.82 -0.35 2.77 16 35 H 0.40 4.12 8.84 -40.82 -0.36 3.76 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.13 3.03 5.63 -52.48 -0.30 2.74 16 40 H 0.13 2.69 6.22 -52.48 -0.33 2.36 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -34.98 342.91 -6.62 -41.59 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.34 Total: 7.52 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.46 Total: -7.19 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.32 Total: -43.17 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.29 Total: -19.99 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.98 -6.62 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330118674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.089 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds