Wall clock time and date at job start Tue Mar 31 2020 07:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99780 * 2 1 4 4 H 1.09000 * 109.47306 * 330.00148 * 3 2 1 5 5 C 1.53004 * 109.46792 * 90.00270 * 3 2 1 6 6 C 1.53000 * 109.47128 * 210.00189 * 3 2 1 7 7 N 1.46495 * 109.47297 * 65.00212 * 6 3 2 8 8 C 1.34776 * 120.00342 * 179.72309 * 7 6 3 9 9 O 1.21594 * 119.99482 * 0.27796 * 8 7 6 10 10 N 1.34775 * 120.00312 * 180.27864 * 8 7 6 11 11 C 1.40025 * 120.00034 * 175.49756 * 10 8 7 12 12 C 1.38908 * 119.99976 * 214.85013 * 11 10 8 13 13 C 1.38010 * 120.00064 * 179.81214 * 12 11 10 14 14 C 1.38909 * 119.99891 * 0.43768 * 13 12 11 15 15 O 1.35779 * 119.99506 * 179.77017 * 14 13 12 16 16 C 1.34815 * 116.99661 * 185.36613 * 15 14 13 17 17 H 1.08000 * 120.00264 * 354.96248 * 16 15 14 18 18 C 1.38632 * 120.00115 * 174.96438 * 16 15 14 19 19 N 1.31573 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99957 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47199 * 59.99904 * 20 18 16 22 22 H 1.48500 * 109.47278 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47407 * 299.99958 * 20 18 16 24 24 C 1.38901 * 119.99847 * 359.79177 * 14 13 12 25 25 C 1.37999 * 120.00452 * 359.97438 * 24 14 13 26 26 H 1.09000 * 109.47542 * 59.99826 * 1 2 3 27 27 H 1.09005 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47299 * 299.99547 * 1 2 3 29 29 H 1.08997 * 109.47235 * 299.99903 * 5 3 2 30 30 H 1.09000 * 109.47295 * 59.99871 * 5 3 2 31 31 H 1.09001 * 109.46792 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47154 * 305.00179 * 6 3 2 33 33 H 1.08997 * 109.46885 * 185.00265 * 6 3 2 34 34 H 0.97002 * 119.99997 * 359.97438 * 7 6 3 35 35 H 0.96997 * 120.00105 * 355.49082 * 10 8 7 36 36 H 1.08002 * 119.99959 * 359.97438 * 12 11 10 37 37 H 1.07996 * 120.00137 * 180.18945 * 13 12 11 38 38 H 0.96996 * 119.99808 * 179.97438 * 19 18 16 39 39 H 1.08005 * 119.99216 * 179.97438 * 24 14 13 40 40 H 1.08006 * 120.00057 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7713 1.4426 6 6 3.3588 1.2634 -0.7213 7 7 3.1476 0.9333 -2.1328 8 6 4.2007 0.8458 -2.9694 9 8 5.3266 1.0359 -2.5514 10 7 4.0059 0.5476 -4.2692 11 6 5.0881 0.5492 -5.1578 12 6 4.9072 0.9616 -6.4718 13 6 5.9747 0.9669 -7.3465 14 6 7.2280 0.5512 -6.9153 15 8 8.2772 0.5520 -7.7772 16 6 9.4380 0.0333 -7.3289 17 1 9.5262 -0.2837 -6.3002 18 6 10.5184 -0.0932 -8.1882 19 7 10.4109 0.2925 -9.4415 20 14 12.1269 -0.8113 -7.5667 21 1 11.8951 -2.1936 -7.0759 22 1 13.1170 -0.8390 -8.6732 23 1 12.6474 0.0271 -6.4571 24 6 7.4078 0.1343 -5.6026 25 6 6.3415 0.1335 -4.7266 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.2569 1.8014 1.9564 30 1 2.8829 1.0774 1.9564 31 1 2.6614 2.7669 1.4426 32 1 3.9931 0.5053 -0.2618 33 1 3.8426 2.2371 -0.6443 34 1 2.2495 0.7812 -2.4662 35 1 3.1160 0.3318 -4.5892 36 1 3.9318 1.2806 -6.8083 37 1 5.8348 1.2905 -8.3673 38 1 11.1669 0.2043 -10.0427 39 1 8.3822 -0.1893 -5.2676 40 1 6.4813 -0.1910 -3.7060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330118674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:27 Heat of formation + Delta-G solvation = -97.209182 kcal Electronic energy + Delta-G solvation = -22607.766159 eV Core-core repulsion = 19001.824408 eV Total energy + Delta-G solvation = -3605.941751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62554 -40.48858 -39.38730 -38.22582 -35.76802 -35.38184 -34.15056 -32.63198 -31.82245 -29.57905 -27.75055 -27.31994 -26.60919 -23.96296 -23.17598 -22.47818 -21.72530 -20.05109 -19.42617 -18.92880 -18.17673 -17.83972 -16.73733 -16.57545 -16.29853 -16.21359 -15.89707 -15.66288 -15.46248 -15.23279 -14.92160 -14.60934 -14.25203 -14.08071 -13.65978 -13.53863 -13.34268 -13.22092 -13.16193 -13.01303 -12.67959 -12.43418 -12.29951 -12.13929 -11.70702 -11.48074 -11.31318 -10.93273 -10.61966 -10.53705 -10.11974 -9.81046 -8.55880 -8.45222 -6.11843 0.55192 0.61564 1.35504 1.45330 1.51183 1.62312 2.10080 2.19446 2.78254 2.85039 3.16921 3.24465 3.54478 3.76953 4.04676 4.12150 4.15566 4.20548 4.50752 4.52165 4.57955 4.59907 4.67657 4.70232 4.78013 4.81464 4.94097 4.97543 5.08520 5.15823 5.26096 5.37124 5.42606 5.46202 5.64451 5.73068 6.00034 6.04786 6.21715 6.25940 6.99333 7.04900 7.54275 7.79177 8.77255 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.002569 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.956621 B =10895.957540 C =11465.627550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.406 6.406 3 C 0.081 3.919 4 H 0.089 0.911 5 C -0.171 4.171 6 C 0.139 3.861 7 N -0.722 5.722 8 C 0.696 3.304 9 O -0.622 6.622 10 N -0.662 5.662 11 C 0.081 3.919 12 C -0.077 4.077 13 C -0.179 4.179 14 C 0.105 3.895 15 O -0.227 6.227 16 C -0.414 4.414 17 H 0.096 0.904 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.016 2.984 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.228 4.228 25 C -0.077 4.077 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.413 0.587 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.130 0.870 38 H 0.273 0.727 39 H 0.115 0.885 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.274 1.540 18.454 29.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.023 3.977 4 H 0.107 0.893 5 C -0.229 4.229 6 C 0.015 3.985 7 N -0.378 5.378 8 C 0.396 3.604 9 O -0.503 6.503 10 N -0.311 5.311 11 C -0.014 4.014 12 C -0.098 4.098 13 C -0.198 4.198 14 C 0.054 3.946 15 O -0.134 6.134 16 C -0.490 4.490 17 H 0.113 0.887 18 C -0.218 4.218 19 N -0.556 5.556 20 Si 0.835 3.165 21 H -0.183 1.183 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.248 4.248 25 C -0.098 4.098 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.249 0.751 35 H 0.261 0.739 36 H 0.185 0.815 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.075 1.651 18.483 28.839 hybrid contribution 0.174 -0.315 -0.168 0.397 sum -21.901 1.336 18.315 28.581 Atomic orbital electron populations 1.22986 0.79474 1.03665 1.01147 1.87974 1.21397 1.27932 1.95257 1.22367 0.93233 0.85372 0.96712 0.89301 1.22197 1.03345 1.02339 0.95020 1.21427 0.97164 1.01260 0.78688 1.44785 1.08279 1.75612 1.09165 1.16150 0.84897 0.78017 0.81343 1.90924 1.23895 1.58663 1.76789 1.42061 1.10675 1.72307 1.06079 1.17157 0.87753 1.06161 0.90287 1.20741 0.99304 0.98676 0.91033 1.20316 0.89827 1.08409 1.01272 1.19933 0.89285 0.95511 0.89868 1.83934 1.18056 1.72456 1.38948 1.21720 0.87599 1.41882 0.97817 0.88660 1.26515 1.02854 0.97338 0.95120 1.70169 1.33283 1.46519 1.05643 0.84695 0.74808 0.78931 0.78082 1.18326 1.19251 1.18511 1.21086 1.00148 1.09832 0.93744 1.20937 0.92128 0.97775 0.98930 0.92525 0.89152 0.93047 0.90715 0.92354 0.90139 0.92715 0.90180 0.75088 0.73929 0.81459 0.85202 0.91800 0.86684 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.41 -5.68 10.29 -148.98 -1.53 -7.21 16 3 C 0.08 0.92 2.75 30.60 0.08 1.00 16 4 H 0.09 0.64 7.79 -2.39 -0.02 0.62 16 5 C -0.17 -1.61 9.53 71.98 0.69 -0.92 16 6 C 0.14 2.46 5.34 86.38 0.46 2.92 16 7 N -0.72 -13.45 5.51 -478.55 -2.64 -16.09 16 8 C 0.70 19.62 8.41 179.06 1.51 21.13 16 9 O -0.62 -24.03 13.78 -4.01 -0.06 -24.09 16 10 N -0.66 -16.66 5.35 -317.04 -1.69 -18.36 16 11 C 0.08 2.78 6.30 38.15 0.24 3.02 16 12 C -0.08 -2.51 9.96 22.38 0.22 -2.29 16 13 C -0.18 -7.46 9.99 22.38 0.22 -7.24 16 14 C 0.10 5.39 6.65 22.59 0.15 5.54 16 15 O -0.23 -13.98 9.76 -22.92 -0.22 -14.20 16 16 C -0.41 -24.99 9.48 67.91 0.64 -24.35 16 17 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 18 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 19 N -0.92 -57.10 13.67 21.61 0.30 -56.81 16 20 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 24 C -0.23 -11.03 9.16 22.37 0.20 -10.83 16 25 C -0.08 -3.25 8.69 22.38 0.19 -3.06 16 26 H 0.06 0.25 8.08 -2.39 -0.02 0.23 16 27 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.05 0.28 7.87 -2.39 -0.02 0.26 16 29 H 0.07 0.53 7.87 -2.39 -0.02 0.51 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.41 4.83 8.49 -92.71 -0.79 4.05 16 35 H 0.42 6.62 8.84 -92.71 -0.82 5.80 16 36 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.12 5.75 5.63 -2.91 -0.02 5.73 16 40 H 0.12 5.28 6.22 -2.91 -0.02 5.27 16 Total: -1.00 -81.37 342.91 1.96 -79.41 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.53 Total: 25.29 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 6.31 Total: -14.42 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -4.03 Total: -91.25 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.81 Total: -45.50 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -81.37 1.96 -79.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330118674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.801 kcal (2) G-P(sol) polarization free energy of solvation -81.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds