Wall clock time and date at job start Tue Mar 31 2020 07:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47246 * 2 1 4 4 O 1.42903 * 109.47473 * 239.99600 * 2 1 3 5 5 C 1.53000 * 109.47424 * 119.99515 * 2 1 3 6 6 N 1.46495 * 109.47556 * 185.00401 * 5 2 1 7 7 C 1.46505 * 120.00042 * 89.99999 * 6 5 2 8 8 C 1.34775 * 120.00116 * 269.99948 * 6 5 2 9 9 O 1.21595 * 120.00062 * 0.02562 * 8 6 5 10 10 N 1.34774 * 120.00019 * 179.97438 * 8 6 5 11 11 C 1.40028 * 119.99956 * 174.76281 * 10 8 6 12 12 C 1.38915 * 119.99884 * 326.15071 * 11 10 8 13 13 C 1.38014 * 119.99657 * 179.81222 * 12 11 10 14 14 C 1.38904 * 120.00048 * 0.43999 * 13 12 11 15 15 O 1.35790 * 119.99571 * 179.76879 * 14 13 12 16 16 C 1.34809 * 116.99473 * 185.94436 * 15 14 13 17 17 H 1.08006 * 120.00288 * 5.39556 * 16 15 14 18 18 C 1.38634 * 119.99793 * 185.40427 * 16 15 14 19 19 N 1.31576 * 119.99770 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99882 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47212 * 59.99738 * 20 18 16 22 22 H 1.48501 * 109.46746 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47103 * 299.99386 * 20 18 16 24 24 C 1.38901 * 120.00406 * 359.78917 * 14 13 12 25 25 C 1.38015 * 119.99944 * 0.02562 * 24 14 13 26 26 H 1.08992 * 109.47653 * 300.00470 * 1 2 3 27 27 H 1.08999 * 109.47056 * 60.00519 * 1 2 3 28 28 H 1.09004 * 109.47246 * 179.97438 * 1 2 3 29 29 H 0.96695 * 113.99967 * 299.99717 * 4 2 1 30 30 H 1.09007 * 109.47091 * 305.00462 * 5 2 1 31 31 H 1.08997 * 109.47190 * 64.99861 * 5 2 1 32 32 H 1.08999 * 109.47070 * 90.00467 * 7 6 5 33 33 H 1.09003 * 109.46768 * 210.00148 * 7 6 5 34 34 H 1.09000 * 109.47247 * 329.99940 * 7 6 5 35 35 H 0.96995 * 120.00502 * 354.75905 * 10 8 6 36 36 H 1.07998 * 120.00436 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.99977 * 180.18767 * 13 12 11 38 38 H 0.97004 * 119.99577 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.00274 * 179.97438 * 24 14 13 40 40 H 1.07998 * 120.00106 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 7 3.5000 -0.6177 1.3111 7 6 4.1257 0.5102 2.0058 8 6 4.2676 -1.5601 0.7288 9 8 3.7483 -2.4961 0.1518 10 7 5.6108 -1.4647 0.7852 11 6 6.4080 -2.4977 0.2771 12 6 5.9781 -3.8155 0.3676 13 6 6.7622 -4.8332 -0.1366 14 6 7.9853 -4.5406 -0.7264 15 8 8.7587 -5.5425 -1.2182 16 6 9.9851 -5.2056 -1.6652 17 1 10.3458 -4.1949 -1.5427 18 6 10.7833 -6.1564 -2.2823 19 7 10.3440 -7.3877 -2.4312 20 14 12.4824 -5.6894 -2.9023 21 1 13.3094 -5.2094 -1.7661 22 1 13.1284 -6.8767 -3.5174 23 1 12.3603 -4.6110 -3.9160 24 6 8.4174 -3.2234 -0.8126 25 6 7.6316 -2.2052 -0.3118 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7211 -1.5953 -1.2328 30 1 1.6053 -0.2616 2.1370 31 1 1.7517 -1.7714 1.2058 32 1 4.2822 0.2505 3.0527 33 1 5.0850 0.7366 1.5403 34 1 3.4756 1.3827 1.9410 35 1 6.0253 -0.6805 1.1777 36 1 5.0288 -4.0434 0.8295 37 1 6.4266 -5.8576 -0.0690 38 1 10.9027 -8.0530 -2.8627 39 1 9.3685 -2.9959 -1.2708 40 1 7.9677 -1.1810 -0.3785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330728741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:17 Heat of formation + Delta-G solvation = -67.022529 kcal Electronic energy + Delta-G solvation = -23267.973909 eV Core-core repulsion = 19663.341149 eV Total energy + Delta-G solvation = -3604.632760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.49864 -38.86919 -37.76441 -36.43184 -35.23335 -33.82755 -32.13415 -31.42444 -30.14605 -28.13211 -27.59962 -25.83758 -25.08160 -22.32783 -22.07407 -21.21940 -19.78815 -18.43507 -17.84159 -17.25727 -16.78890 -16.22332 -15.92679 -15.67797 -14.76535 -14.52286 -14.47318 -14.06194 -13.93011 -13.60539 -13.44900 -13.23003 -12.95695 -12.73613 -12.55634 -12.43002 -12.30671 -11.86760 -11.74334 -11.51061 -11.45552 -11.18230 -11.00177 -10.64502 -10.42234 -10.41854 -9.86093 -9.59117 -9.19097 -8.73238 -8.60316 -8.13085 -6.82488 -6.38872 -3.96801 2.23398 2.30058 2.62781 3.16293 3.17026 3.20476 3.40422 3.94119 4.01843 4.29023 4.53293 4.65262 4.73665 4.81911 4.88241 5.01909 5.14199 5.16382 5.33098 5.38641 5.40014 5.42663 5.61582 5.69964 5.82312 5.86912 6.14735 6.23205 6.32154 6.40035 6.72388 6.89123 6.97551 7.16886 7.28151 7.29922 7.48997 7.65344 7.87113 8.03940 8.06095 8.74694 9.06548 9.78295 10.79340 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034507 B = 0.002881 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.240689 B = 9715.233645 C = 9950.635216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 H 0.093 0.907 4 O -0.553 6.553 5 C 0.102 3.898 6 N -0.632 5.632 7 C 0.080 3.920 8 C 0.708 3.292 9 O -0.570 6.570 10 N -0.676 5.676 11 C 0.060 3.940 12 C -0.067 4.067 13 C -0.176 4.176 14 C 0.144 3.856 15 O -0.178 6.178 16 C -0.390 4.390 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.217 4.217 25 C -0.094 4.094 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.381 0.619 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.396 0.604 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.270 0.730 39 H 0.131 0.869 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.473 17.080 9.447 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.024 3.976 3 H 0.110 0.890 4 O -0.359 6.359 5 C -0.022 4.022 6 N -0.370 5.370 7 C -0.064 4.064 8 C 0.410 3.590 9 O -0.446 6.446 10 N -0.324 5.324 11 C -0.033 4.033 12 C -0.088 4.088 13 C -0.196 4.196 14 C 0.091 3.909 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.237 4.237 25 C -0.115 4.115 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.229 0.771 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.232 0.768 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.148 0.852 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.545 16.501 8.817 23.698 hybrid contribution 0.789 0.427 0.044 0.898 sum -13.756 16.928 8.862 23.544 Atomic orbital electron populations 1.22459 0.96193 1.02826 1.02710 1.22308 0.92605 0.96884 0.85847 0.88952 1.86582 1.77310 1.29479 1.42502 1.22095 0.78993 1.02861 0.98250 1.46874 1.05914 1.25554 1.58679 1.21713 0.98620 0.89247 0.96826 1.15760 0.81381 0.82519 0.79366 1.90884 1.72447 1.33940 1.47326 1.42479 1.04022 1.22226 1.63715 1.17037 0.93070 0.86873 1.06347 1.20598 0.98843 0.90324 0.99007 1.20116 0.94480 0.99240 1.05769 1.19402 0.90881 0.88085 0.92571 1.84006 1.25680 1.30418 1.68101 1.21245 0.88672 0.98045 1.38732 0.89231 1.25273 0.99876 0.94856 0.96571 1.70042 1.37388 1.02104 1.40362 0.85799 0.80405 0.78162 0.79147 1.19565 1.20337 1.19553 1.20953 1.02525 0.92106 1.08108 1.20432 0.94243 0.98255 0.98566 0.91684 0.91613 0.92011 0.77110 0.90013 0.89329 0.92572 0.91529 0.90998 0.76848 0.85795 0.86206 0.92036 0.85172 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.53 37.15 0.35 -0.84 16 2 C 0.08 0.75 3.83 -26.73 -0.10 0.65 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 4 O -0.55 -7.12 12.20 -43.00 -0.52 -7.64 16 5 C 0.10 0.90 5.11 -4.04 -0.02 0.88 16 6 N -0.63 -6.80 2.86 -187.35 -0.54 -7.33 16 7 C 0.08 0.54 10.25 59.85 0.61 1.16 16 8 C 0.71 10.76 7.64 -86.92 -0.66 10.10 16 9 O -0.57 -10.58 12.61 -2.49 -0.03 -10.61 16 10 N -0.68 -10.02 5.22 -14.18 -0.07 -10.10 16 11 C 0.06 1.11 6.27 -83.61 -0.52 0.59 16 12 C -0.07 -1.38 8.65 -39.41 -0.34 -1.72 16 13 C -0.18 -3.98 9.99 -39.42 -0.39 -4.38 16 14 C 0.14 3.59 6.65 -39.09 -0.26 3.34 16 15 O -0.18 -5.20 9.76 -0.01 0.00 -5.20 16 16 C -0.39 -11.05 9.44 30.88 0.29 -10.76 16 17 H 0.09 2.32 5.29 -52.48 -0.28 2.05 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 20 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 C -0.22 -4.79 9.13 -39.42 -0.36 -5.15 16 25 C -0.09 -1.77 9.96 -39.41 -0.39 -2.16 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.38 4.48 8.74 45.56 0.40 4.88 16 30 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.09 0.91 7.42 -51.93 -0.39 0.52 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.43 6.29 -51.93 -0.33 0.10 16 34 H 0.07 0.34 8.07 -51.93 -0.42 -0.07 16 35 H 0.40 4.48 6.51 -40.82 -0.27 4.22 16 36 H 0.12 2.46 6.45 -52.49 -0.34 2.13 16 37 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.13 2.83 5.71 -52.49 -0.30 2.54 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -35.01 336.82 -6.68 -41.69 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.43 Total: 10.73 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.90 Total: -7.34 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.15 Total: -42.42 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.56 Total: -23.46 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.01 -6.68 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330728741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.335 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds