Wall clock time and date at job start Tue Mar 31 2020 07:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47246 * 2 1 4 4 O 1.42903 * 109.47473 * 239.99600 * 2 1 3 5 5 C 1.53000 * 109.47424 * 119.99515 * 2 1 3 6 6 N 1.46495 * 109.47556 * 185.00401 * 5 2 1 7 7 C 1.46505 * 120.00042 * 89.99999 * 6 5 2 8 8 C 1.34775 * 120.00116 * 269.99948 * 6 5 2 9 9 O 1.21595 * 120.00062 * 0.02562 * 8 6 5 10 10 N 1.34774 * 120.00019 * 179.97438 * 8 6 5 11 11 C 1.40028 * 119.99956 * 174.76281 * 10 8 6 12 12 C 1.38915 * 119.99884 * 326.15071 * 11 10 8 13 13 C 1.38014 * 119.99657 * 179.81222 * 12 11 10 14 14 C 1.38904 * 120.00048 * 0.43999 * 13 12 11 15 15 O 1.35790 * 119.99571 * 179.76879 * 14 13 12 16 16 C 1.34809 * 116.99473 * 185.94436 * 15 14 13 17 17 H 1.08006 * 120.00288 * 5.39556 * 16 15 14 18 18 C 1.38634 * 119.99793 * 185.40427 * 16 15 14 19 19 N 1.31576 * 119.99770 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99882 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47212 * 59.99738 * 20 18 16 22 22 H 1.48501 * 109.46746 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47103 * 299.99386 * 20 18 16 24 24 C 1.38901 * 120.00406 * 359.78917 * 14 13 12 25 25 C 1.38015 * 119.99944 * 0.02562 * 24 14 13 26 26 H 1.08992 * 109.47653 * 300.00470 * 1 2 3 27 27 H 1.08999 * 109.47056 * 60.00519 * 1 2 3 28 28 H 1.09004 * 109.47246 * 179.97438 * 1 2 3 29 29 H 0.96695 * 113.99967 * 299.99717 * 4 2 1 30 30 H 1.09007 * 109.47091 * 305.00462 * 5 2 1 31 31 H 1.08997 * 109.47190 * 64.99861 * 5 2 1 32 32 H 1.08999 * 109.47070 * 90.00467 * 7 6 5 33 33 H 1.09003 * 109.46768 * 210.00148 * 7 6 5 34 34 H 1.09000 * 109.47247 * 329.99940 * 7 6 5 35 35 H 0.96995 * 120.00502 * 354.75905 * 10 8 6 36 36 H 1.07998 * 120.00436 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.99977 * 180.18767 * 13 12 11 38 38 H 0.97004 * 119.99577 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.00274 * 179.97438 * 24 14 13 40 40 H 1.07998 * 120.00106 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 7 3.5000 -0.6177 1.3111 7 6 4.1257 0.5102 2.0058 8 6 4.2676 -1.5601 0.7288 9 8 3.7483 -2.4961 0.1518 10 7 5.6108 -1.4647 0.7852 11 6 6.4080 -2.4977 0.2771 12 6 5.9781 -3.8155 0.3676 13 6 6.7622 -4.8332 -0.1366 14 6 7.9853 -4.5406 -0.7264 15 8 8.7587 -5.5425 -1.2182 16 6 9.9851 -5.2056 -1.6652 17 1 10.3458 -4.1949 -1.5427 18 6 10.7833 -6.1564 -2.2823 19 7 10.3440 -7.3877 -2.4312 20 14 12.4824 -5.6894 -2.9023 21 1 13.3094 -5.2094 -1.7661 22 1 13.1284 -6.8767 -3.5174 23 1 12.3603 -4.6110 -3.9160 24 6 8.4174 -3.2234 -0.8126 25 6 7.6316 -2.2052 -0.3118 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7211 -1.5953 -1.2328 30 1 1.6053 -0.2616 2.1370 31 1 1.7517 -1.7714 1.2058 32 1 4.2822 0.2505 3.0527 33 1 5.0850 0.7366 1.5403 34 1 3.4756 1.3827 1.9410 35 1 6.0253 -0.6805 1.1777 36 1 5.0288 -4.0434 0.8295 37 1 6.4266 -5.8576 -0.0690 38 1 10.9027 -8.0530 -2.8627 39 1 9.3685 -2.9959 -1.2708 40 1 7.9677 -1.1810 -0.3785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330728741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:17 Heat of formation + Delta-G solvation = -93.171567 kcal Electronic energy + Delta-G solvation = -23269.107816 eV Core-core repulsion = 19663.341149 eV Total energy + Delta-G solvation = -3605.766667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.71273 -40.53484 -38.89546 -37.92040 -36.25102 -35.26787 -34.11129 -32.20345 -31.84799 -29.56868 -28.32666 -27.40071 -26.43936 -23.89861 -23.26062 -22.48205 -21.07069 -19.84125 -19.38663 -18.87974 -18.04328 -17.41418 -16.96258 -16.50788 -16.35131 -16.09317 -15.78387 -15.48179 -15.27069 -14.91913 -14.80415 -14.50663 -14.26142 -13.92022 -13.54546 -13.51644 -13.30679 -13.20562 -13.03118 -12.89731 -12.68185 -12.53699 -12.38318 -12.13364 -11.87597 -11.37312 -11.27887 -11.15106 -10.91043 -10.52221 -9.82110 -9.54607 -8.52252 -8.43227 -6.10316 0.54591 0.61839 1.37647 1.48357 1.54313 1.61955 2.16901 2.21096 2.86858 2.94710 3.19757 3.54063 3.55183 3.88379 4.05784 4.14535 4.16503 4.17691 4.32924 4.45392 4.51974 4.60605 4.64952 4.77630 4.79750 4.87379 4.89536 5.06356 5.14065 5.20333 5.28161 5.33389 5.41527 5.58093 5.61688 5.72248 5.94089 6.05008 6.22033 6.79883 6.94709 7.01023 7.58162 7.82724 8.80243 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034507 B = 0.002881 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.240689 B = 9715.233645 C = 9950.635216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 H 0.100 0.900 4 O -0.582 6.582 5 C 0.100 3.900 6 N -0.624 5.624 7 C 0.069 3.931 8 C 0.698 3.302 9 O -0.610 6.610 10 N -0.668 5.668 11 C 0.087 3.913 12 C -0.072 4.072 13 C -0.186 4.186 14 C 0.105 3.895 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.105 0.895 18 C -0.026 4.026 19 N -0.924 5.924 20 Si 1.020 2.980 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.217 4.217 25 C -0.086 4.086 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.380 0.620 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.417 0.583 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.272 0.728 39 H 0.132 0.868 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.898 21.218 10.873 28.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 H 0.118 0.882 4 O -0.389 6.389 5 C -0.024 4.024 6 N -0.361 5.361 7 C -0.073 4.073 8 C 0.400 3.600 9 O -0.489 6.489 10 N -0.318 5.318 11 C -0.008 4.008 12 C -0.092 4.092 13 C -0.206 4.206 14 C 0.054 3.946 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.123 0.877 18 C -0.223 4.223 19 N -0.562 5.562 20 Si 0.839 3.161 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.237 4.237 25 C -0.106 4.106 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.139 0.861 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.256 0.744 36 H 0.147 0.853 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.150 0.850 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.029 20.754 10.314 27.622 hybrid contribution 0.587 -0.604 -0.208 0.868 sum -14.442 20.150 10.106 26.771 Atomic orbital electron populations 1.22378 0.94303 1.03056 1.03670 1.22502 0.94144 0.96636 0.84591 0.88246 1.86540 1.78121 1.29665 1.44596 1.22281 0.77946 1.02259 0.99874 1.46984 1.06441 1.25299 1.57337 1.22051 0.99342 0.88651 0.97237 1.16048 0.81456 0.83011 0.79466 1.90870 1.73107 1.35882 1.49075 1.42332 1.03976 1.21935 1.63602 1.17149 0.92941 0.87163 1.03513 1.20688 0.98662 0.90891 0.98978 1.20237 0.94422 0.99813 1.06145 1.19838 0.91666 0.88981 0.94101 1.83968 1.26733 1.32569 1.70640 1.21817 0.89098 0.98996 1.38902 0.87740 1.26632 1.04617 0.94545 0.96497 1.70207 1.39625 1.03706 1.42689 0.84628 0.74285 0.78171 0.78996 1.17918 1.19912 1.18095 1.21103 1.02967 0.91650 1.07960 1.20771 0.93468 0.99551 0.96841 0.89191 0.92137 0.92188 0.77194 0.86105 0.91217 0.90938 0.90933 0.88262 0.74371 0.85344 0.86970 0.91926 0.85049 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.53 71.98 0.69 -1.16 16 2 C 0.08 1.25 3.83 30.59 0.12 1.37 16 3 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 4 O -0.58 -14.55 12.20 -141.55 -1.73 -16.27 16 5 C 0.10 1.46 5.11 86.38 0.44 1.90 16 6 N -0.62 -11.37 2.86 -864.90 -2.47 -13.84 16 7 C 0.07 0.62 10.25 127.77 1.31 1.93 16 8 C 0.70 19.68 7.64 179.06 1.37 21.04 16 9 O -0.61 -22.25 12.61 3.41 0.04 -22.21 16 10 N -0.67 -17.72 5.22 -317.04 -1.66 -19.37 16 11 C 0.09 3.06 6.27 38.15 0.24 3.30 16 12 C -0.07 -2.92 8.65 22.38 0.19 -2.73 16 13 C -0.19 -8.78 9.99 22.38 0.22 -8.56 16 14 C 0.10 5.43 6.65 22.59 0.15 5.58 16 15 O -0.23 -14.36 9.76 -22.96 -0.22 -14.59 16 16 C -0.41 -24.24 9.44 67.91 0.64 -23.60 16 17 H 0.11 5.53 5.29 -2.91 -0.02 5.51 16 18 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 19 N -0.92 -57.90 13.67 21.61 0.30 -57.60 16 20 Si 1.02 43.14 29.55 68.60 2.03 45.17 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 24 C -0.22 -9.53 9.13 22.38 0.20 -9.32 16 25 C -0.09 -3.00 9.96 22.38 0.22 -2.78 16 26 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.38 9.11 8.74 -74.06 -0.65 8.46 16 30 H 0.12 0.85 8.07 -2.38 -0.02 0.83 16 31 H 0.07 1.33 7.42 -2.39 -0.02 1.31 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.58 6.29 -2.39 -0.02 0.57 16 34 H 0.10 0.41 8.07 -2.39 -0.02 0.39 16 35 H 0.42 7.61 6.51 -92.71 -0.60 7.01 16 36 H 0.13 5.13 6.45 -2.91 -0.02 5.11 16 37 H 0.11 5.28 8.06 -2.91 -0.02 5.26 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.13 5.67 5.71 -2.91 -0.02 5.65 16 40 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -81.84 336.82 2.38 -79.46 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -0.17 Total: 33.31 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 6.26 Total: -14.06 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -3.83 Total: -90.81 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -1.91 Total: -53.07 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -81.84 2.38 -79.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330728741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.711 kcal (2) G-P(sol) polarization free energy of solvation -81.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds