Wall clock time and date at job start Tue Mar 31 2020 07:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47162 * 2 1 4 4 C 1.50697 * 109.47008 * 239.99709 * 2 1 3 5 5 H 1.08006 * 119.99977 * 240.00144 * 4 2 1 6 6 C 1.37871 * 120.00270 * 60.00237 * 4 2 1 7 7 N 1.31516 * 119.99783 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00329 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47389 * 90.00111 * 8 6 4 10 10 H 1.48505 * 109.47183 * 209.99882 * 8 6 4 11 11 H 1.48500 * 109.46886 * 329.99942 * 8 6 4 12 12 N 1.46499 * 109.46859 * 119.99930 * 2 1 3 13 13 C 1.46499 * 120.00112 * 59.99730 * 12 2 1 14 14 C 1.34782 * 120.00181 * 239.99818 * 12 2 1 15 15 O 1.21617 * 119.99608 * 2.50289 * 14 12 2 16 16 C 1.47415 * 119.99942 * 182.50123 * 14 12 2 17 17 N 1.36063 * 126.45539 * 355.18423 * 16 14 12 18 18 C 1.29927 * 108.47841 * 180.28449 * 17 16 14 19 19 O 1.34041 * 109.24712 * 359.76176 * 18 17 16 20 20 C 1.34261 * 108.22632 * 359.97438 * 19 18 17 21 21 C 1.50696 * 126.52474 * 179.97438 * 20 19 18 22 22 H 1.09004 * 110.41898 * 162.71770 * 21 20 19 23 23 C 1.54484 * 110.37054 * 285.02089 * 21 20 19 24 24 C 1.54514 * 104.06001 * 142.81148 * 23 21 20 25 25 C 1.54479 * 104.18550 * 359.93557 * 24 23 21 26 26 O 1.44427 * 110.37733 * 40.40393 * 21 20 19 27 27 H 1.09004 * 109.47123 * 300.00665 * 1 2 3 28 28 H 1.09004 * 109.46794 * 59.99960 * 1 2 3 29 29 H 1.08997 * 109.47162 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99945 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47316 * 263.88857 * 13 12 2 32 32 H 1.08996 * 109.47299 * 23.88881 * 13 12 2 33 33 H 1.09007 * 109.47302 * 143.88815 * 13 12 2 34 34 H 1.08012 * 125.37815 * 179.77784 * 18 17 16 35 35 H 1.08993 * 110.50961 * 24.17193 * 23 21 20 36 36 H 1.08994 * 110.63037 * 261.51150 * 23 21 20 37 37 H 1.09007 * 110.50893 * 118.64186 * 24 23 21 38 38 H 1.08994 * 110.51245 * 241.21792 * 24 23 21 39 39 H 1.08997 * 110.37652 * 94.91608 * 25 24 23 40 40 H 1.09003 * 110.37199 * 217.26046 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0495 1.1412 1.9145 16 6 3.3299 -0.7457 3.2585 17 7 3.0548 -2.0271 3.6241 18 6 3.7087 -2.2935 4.7148 19 8 4.4177 -1.2160 5.0793 20 6 4.1961 -0.2437 4.1804 21 6 4.7878 1.1422 4.1940 22 1 4.6880 1.6079 3.2135 23 6 4.1023 2.0091 5.2733 24 6 5.2487 2.8733 5.8446 25 6 6.4933 2.4272 5.0457 26 8 6.1764 1.0922 4.5879 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7096 1.1617 -3.4845 31 1 0.7996 -2.1451 2.0896 32 1 1.4236 -2.5691 0.4775 33 1 2.5064 -2.6089 1.8897 34 1 3.6849 -3.2348 5.2440 35 1 3.6735 1.3798 6.0530 36 1 3.3337 2.6405 4.8276 37 1 5.0479 3.9319 5.6791 38 1 5.3849 2.6730 6.9072 39 1 6.6567 3.0902 4.1961 40 1 7.3722 2.4112 5.6902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339289875.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:34 Heat of formation + Delta-G solvation = -42.384079 kcal Electronic energy + Delta-G solvation = -24358.516731 eV Core-core repulsion = 20754.952375 eV Total energy + Delta-G solvation = -3603.564356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.35273 -39.38223 -38.86730 -35.38461 -34.74437 -32.69190 -32.34137 -31.55452 -29.48897 -28.00203 -25.98403 -25.20602 -24.07366 -23.53554 -21.86618 -21.43651 -20.56581 -19.01765 -17.27197 -16.80493 -16.58490 -16.35090 -16.11544 -15.80035 -15.40786 -15.09733 -14.31186 -14.27614 -13.89649 -13.77603 -13.25786 -12.87911 -12.49139 -12.25025 -12.06406 -11.86878 -11.71265 -11.57238 -11.45592 -11.20364 -11.05802 -10.84894 -10.78769 -10.66750 -10.26898 -10.16707 -10.13878 -9.95063 -9.22591 -9.11372 -8.85237 -8.41611 -7.54307 -6.05745 -4.13344 1.20460 2.26932 2.59999 3.28683 3.35391 3.38992 3.63138 3.83365 3.89577 4.20824 4.41227 4.45923 4.48494 4.75999 4.92693 5.10796 5.16069 5.22131 5.25656 5.47900 5.52891 5.60931 5.69448 5.77697 5.85045 5.95136 6.03487 6.27599 6.36005 6.62825 6.72343 6.81439 6.90639 7.08519 7.40764 7.51353 7.62243 7.73362 8.02995 8.20297 8.52187 8.80724 9.00041 9.52766 10.99639 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.004362 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.999155 B = 6417.813771 C = 6953.556444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.568 5.568 13 C 0.080 3.920 14 C 0.582 3.418 15 O -0.551 6.551 16 C -0.040 4.040 17 N -0.454 5.454 18 C 0.164 3.836 19 O -0.191 6.191 20 C 0.030 3.970 21 C 0.154 3.846 22 H 0.134 0.866 23 C -0.145 4.145 24 C -0.153 4.153 25 C 0.044 3.956 26 O -0.370 6.370 27 H 0.011 0.989 28 H 0.094 0.906 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.253 0.747 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 -1.323 17.338 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.296 5.296 13 C -0.063 4.063 14 C 0.367 3.633 15 O -0.432 6.432 16 C -0.160 4.160 17 N -0.184 5.184 18 C -0.063 4.063 19 O -0.077 6.077 20 C -0.026 4.026 21 C 0.096 3.904 22 H 0.152 0.848 23 C -0.182 4.182 24 C -0.190 4.190 25 C -0.033 4.033 26 O -0.289 6.289 27 H 0.030 0.970 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.268 0.732 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.823 -1.209 16.751 17.775 hybrid contribution 0.476 -0.297 -0.390 0.684 sum 6.299 -1.507 16.361 17.596 Atomic orbital electron populations 1.22076 0.97924 0.99571 1.00795 1.19044 0.91107 0.94516 0.79667 0.91757 1.21320 1.31836 1.13037 0.90173 0.92147 1.24879 0.94937 0.94970 0.98926 1.69883 1.36426 1.22561 1.23749 0.86478 0.79240 0.79290 0.82303 1.20588 1.21096 1.19908 1.48110 1.46652 1.12426 1.22408 1.21964 1.00819 0.82282 1.01256 1.16796 0.79783 0.85750 0.80970 1.90694 1.61111 1.15145 1.76215 1.21921 1.03111 0.91281 0.99732 1.71088 1.22743 1.13210 1.11364 1.28195 0.91693 0.92258 0.94163 1.84355 1.56441 1.21049 1.45840 1.23226 0.99188 0.90942 0.89292 1.21871 0.81221 0.85743 1.01533 0.84849 1.22967 0.98949 0.98380 0.97949 1.22943 0.94662 1.00656 1.00772 1.23490 0.97969 0.83971 0.97826 1.89209 1.25227 1.29959 1.84496 0.96988 0.88741 0.95035 0.92691 0.94112 0.90878 0.89673 0.73172 0.90649 0.88978 0.89964 0.90543 0.91509 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.97 37.16 0.33 -3.23 16 2 C 0.26 6.72 2.63 -69.08 -0.18 6.54 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.52 -14.48 7.95 -34.44 -0.27 -14.75 16 5 H 0.06 1.66 7.44 -52.48 -0.39 1.27 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.57 -13.07 2.75 -176.54 -0.49 -13.56 16 13 C 0.08 1.57 8.52 59.85 0.51 2.08 16 14 C 0.58 12.99 7.67 -12.52 -0.10 12.89 16 15 O -0.55 -13.33 13.98 5.26 0.07 -13.25 16 16 C -0.04 -0.74 6.67 -83.02 -0.55 -1.29 16 17 N -0.45 -7.21 7.85 -11.49 -0.09 -7.30 16 18 C 0.16 1.95 13.19 51.96 0.69 2.64 16 19 O -0.19 -2.69 10.73 6.46 0.07 -2.62 16 20 C 0.03 0.49 6.27 -35.08 -0.22 0.27 16 21 C 0.15 2.35 3.45 -27.11 -0.09 2.25 16 22 H 0.13 2.32 6.05 -51.93 -0.31 2.00 16 23 C -0.14 -1.74 6.62 -25.16 -0.17 -1.91 16 24 C -0.15 -1.41 7.08 -25.16 -0.18 -1.59 16 25 C 0.04 0.46 7.65 37.93 0.29 0.75 16 26 O -0.37 -5.44 11.33 -35.29 -0.40 -5.84 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 29 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.47 7.12 -51.93 -0.37 1.10 16 33 H 0.09 1.56 5.34 -51.93 -0.28 1.28 16 34 H 0.25 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -32.63 328.61 -5.66 -38.29 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.35 Total: 1.30 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.04 Total: 6.34 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.05 Total: -45.43 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.26 Total: -21.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.63 -5.66 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339289875.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.093 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds