Wall clock time and date at job start Tue Mar 31 2020 07:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47162 * 2 1 4 4 C 1.50697 * 109.47008 * 239.99709 * 2 1 3 5 5 H 1.08006 * 119.99977 * 240.00144 * 4 2 1 6 6 C 1.37871 * 120.00270 * 60.00237 * 4 2 1 7 7 N 1.31516 * 119.99783 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00329 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47389 * 90.00111 * 8 6 4 10 10 H 1.48505 * 109.47183 * 209.99882 * 8 6 4 11 11 H 1.48500 * 109.46886 * 329.99942 * 8 6 4 12 12 N 1.46499 * 109.46859 * 119.99930 * 2 1 3 13 13 C 1.46499 * 120.00112 * 59.99730 * 12 2 1 14 14 C 1.34782 * 120.00181 * 239.99818 * 12 2 1 15 15 O 1.21617 * 119.99608 * 2.50289 * 14 12 2 16 16 C 1.47415 * 119.99942 * 182.50123 * 14 12 2 17 17 N 1.36063 * 126.45539 * 355.18423 * 16 14 12 18 18 C 1.29927 * 108.47841 * 180.28449 * 17 16 14 19 19 O 1.34041 * 109.24712 * 359.76176 * 18 17 16 20 20 C 1.34261 * 108.22632 * 359.97438 * 19 18 17 21 21 C 1.50696 * 126.52474 * 179.97438 * 20 19 18 22 22 H 1.09004 * 110.41898 * 162.71770 * 21 20 19 23 23 C 1.54484 * 110.37054 * 285.02089 * 21 20 19 24 24 C 1.54514 * 104.06001 * 142.81148 * 23 21 20 25 25 C 1.54479 * 104.18550 * 359.93557 * 24 23 21 26 26 O 1.44427 * 110.37733 * 40.40393 * 21 20 19 27 27 H 1.09004 * 109.47123 * 300.00665 * 1 2 3 28 28 H 1.09004 * 109.46794 * 59.99960 * 1 2 3 29 29 H 1.08997 * 109.47162 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99945 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47316 * 263.88857 * 13 12 2 32 32 H 1.08996 * 109.47299 * 23.88881 * 13 12 2 33 33 H 1.09007 * 109.47302 * 143.88815 * 13 12 2 34 34 H 1.08012 * 125.37815 * 179.77784 * 18 17 16 35 35 H 1.08993 * 110.50961 * 24.17193 * 23 21 20 36 36 H 1.08994 * 110.63037 * 261.51150 * 23 21 20 37 37 H 1.09007 * 110.50893 * 118.64186 * 24 23 21 38 38 H 1.08994 * 110.51245 * 241.21792 * 24 23 21 39 39 H 1.08997 * 110.37652 * 94.91608 * 25 24 23 40 40 H 1.09003 * 110.37199 * 217.26046 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0495 1.1412 1.9145 16 6 3.3299 -0.7457 3.2585 17 7 3.0548 -2.0271 3.6241 18 6 3.7087 -2.2935 4.7148 19 8 4.4177 -1.2160 5.0793 20 6 4.1961 -0.2437 4.1804 21 6 4.7878 1.1422 4.1940 22 1 4.6880 1.6079 3.2135 23 6 4.1023 2.0091 5.2733 24 6 5.2487 2.8733 5.8446 25 6 6.4933 2.4272 5.0457 26 8 6.1764 1.0922 4.5879 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7096 1.1617 -3.4845 31 1 0.7996 -2.1451 2.0896 32 1 1.4236 -2.5691 0.4775 33 1 2.5064 -2.6089 1.8897 34 1 3.6849 -3.2348 5.2440 35 1 3.6735 1.3798 6.0530 36 1 3.3337 2.6405 4.8276 37 1 5.0479 3.9319 5.6791 38 1 5.3849 2.6730 6.9072 39 1 6.6567 3.0902 4.1961 40 1 7.3722 2.4112 5.6902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339289875.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:34 Heat of formation + Delta-G solvation = -65.891272 kcal Electronic energy + Delta-G solvation = -24359.536080 eV Core-core repulsion = 20754.952375 eV Total energy + Delta-G solvation = -3604.583705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.52880 -40.66433 -40.32467 -37.25302 -36.02741 -34.66394 -33.36586 -32.61379 -31.41981 -29.13907 -27.62047 -27.32734 -25.49792 -24.61046 -23.10215 -22.54721 -21.94653 -20.60084 -18.70855 -18.41528 -17.90774 -17.84004 -17.34129 -17.24104 -16.64623 -16.46289 -16.03907 -15.98346 -14.93149 -14.85580 -14.75443 -14.38332 -14.19720 -13.93620 -13.53869 -13.32339 -13.00834 -12.88813 -12.82187 -12.76563 -12.70158 -12.38791 -12.33794 -12.22100 -12.13718 -11.72535 -11.50655 -11.19320 -11.06241 -10.83422 -10.53088 -10.12177 -9.35655 -8.16461 -6.32941 -0.06808 1.09062 1.41041 1.42240 1.46625 1.52863 2.14351 2.28264 2.44134 2.71113 3.09528 3.11511 3.42170 3.50277 3.74596 3.88457 3.98637 4.17263 4.28504 4.35996 4.51603 4.58927 4.72758 4.74362 4.77709 4.82255 4.86759 4.88063 4.95960 4.96817 5.03198 5.07687 5.35760 5.43696 5.57203 5.63990 5.64950 5.97820 6.12715 6.40708 6.70715 6.73090 7.17094 7.39631 8.88255 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.004362 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.999155 B = 6417.813771 C = 6953.556444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.017 0.983 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.274 1.274 12 N -0.580 5.580 13 C 0.087 3.913 14 C 0.572 3.428 15 O -0.584 6.584 16 C -0.069 4.069 17 N -0.484 5.484 18 C 0.202 3.798 19 O -0.187 6.187 20 C 0.036 3.964 21 C 0.148 3.852 22 H 0.102 0.898 23 C -0.142 4.142 24 C -0.143 4.143 25 C 0.034 3.966 26 O -0.389 6.389 27 H 0.019 0.981 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.266 0.734 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.314 0.686 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -3.042 19.244 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.160 3.840 3 H 0.035 0.965 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.308 5.308 13 C -0.055 4.055 14 C 0.360 3.640 15 O -0.467 6.467 16 C -0.188 4.188 17 N -0.212 5.212 18 C -0.026 4.026 19 O -0.073 6.073 20 C -0.022 4.022 21 C 0.090 3.910 22 H 0.119 0.881 23 C -0.179 4.179 24 C -0.180 4.180 25 C -0.041 4.041 26 O -0.309 6.309 27 H 0.038 0.962 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.329 0.671 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.641 -2.945 18.666 20.030 hybrid contribution 0.280 0.229 -0.878 0.949 sum 6.921 -2.716 17.788 19.280 Atomic orbital electron populations 1.21863 0.96840 1.00061 1.00091 1.18682 0.91878 0.92432 0.81035 0.96464 1.21517 1.32222 1.13133 0.91142 0.92534 1.25702 0.94956 0.95606 1.01848 1.70011 1.37089 1.23640 1.24570 0.85436 0.78755 0.78327 0.78375 1.19177 1.20729 1.19848 1.48101 1.47206 1.13683 1.21778 1.22044 1.02022 0.80316 1.01105 1.17316 0.79153 0.85670 0.81852 1.90663 1.61991 1.16718 1.77284 1.21334 1.05130 0.92879 0.99421 1.70948 1.24790 1.11942 1.13554 1.29553 0.88062 0.92681 0.92259 1.84403 1.56672 1.21132 1.45116 1.23286 0.98249 0.91645 0.88979 1.21723 0.82322 0.85747 1.01182 0.88096 1.22958 0.99622 0.98285 0.97073 1.22953 0.92545 1.00999 1.01500 1.23802 0.99545 0.82278 0.98516 1.89173 1.24684 1.32350 1.84716 0.96152 0.90867 0.93759 0.92456 0.92632 0.91798 0.88181 0.67114 0.89982 0.89758 0.88290 0.88446 0.91507 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.97 71.98 0.65 -5.92 16 2 C 0.26 14.28 2.63 44.25 0.12 14.40 16 3 H 0.02 1.10 6.90 -2.39 -0.02 1.09 16 4 C -0.54 -30.68 7.95 25.60 0.20 -30.47 16 5 H 0.06 3.17 7.44 -2.91 -0.02 3.15 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -53.18 11.32 21.45 0.24 -52.94 16 8 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.58 -27.52 2.75 -830.68 -2.29 -29.81 16 13 C 0.09 3.40 8.52 127.77 1.09 4.48 16 14 C 0.57 26.67 7.67 86.66 0.66 27.33 16 15 O -0.58 -30.20 13.98 -4.09 -0.06 -30.25 16 16 C -0.07 -2.56 6.67 40.41 0.27 -2.29 16 17 N -0.48 -14.43 7.85 -305.17 -2.40 -16.82 16 18 C 0.20 4.03 13.19 130.52 1.72 5.75 16 19 O -0.19 -4.78 10.73 0.48 0.01 -4.78 16 20 C 0.04 1.17 6.27 25.19 0.16 1.33 16 21 C 0.15 4.60 3.45 30.35 0.10 4.71 16 22 H 0.10 3.78 6.05 -2.39 -0.01 3.77 16 23 C -0.14 -3.33 6.62 31.61 0.21 -3.12 16 24 C -0.14 -2.35 7.08 31.61 0.22 -2.13 16 25 C 0.03 0.66 7.65 72.48 0.55 1.22 16 26 O -0.39 -11.26 11.33 -148.93 -1.69 -12.94 16 27 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.07 4.01 6.07 -2.38 -0.01 4.00 16 29 H 0.04 2.06 7.67 -2.39 -0.02 2.04 16 30 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 2.56 7.12 -2.39 -0.02 2.54 16 33 H 0.10 3.59 5.34 -2.38 -0.01 3.58 16 34 H 0.31 1.68 8.06 -2.90 -0.02 1.66 16 35 H 0.08 1.79 7.86 -2.39 -0.02 1.77 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -74.68 328.61 3.31 -71.37 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.06 Total: 13.41 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.41 Total: 16.78 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -4.44 Total: -99.57 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -1.74 Total: -47.97 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -74.68 3.31 -71.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339289875.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.479 kcal (2) G-P(sol) polarization free energy of solvation -74.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds