Wall clock time and date at job start Tue Mar 31 2020 07:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47250 * 2 1 4 4 C 1.50702 * 109.47008 * 119.99555 * 2 1 3 5 5 H 1.08009 * 119.99840 * 94.99485 * 4 2 1 6 6 C 1.37876 * 120.00225 * 274.99680 * 4 2 1 7 7 N 1.31508 * 120.00096 * 5.09489 * 6 4 2 8 8 Si 1.86800 * 120.00059 * 185.09865 * 6 4 2 9 9 H 1.48498 * 109.47322 * 179.97438 * 8 6 4 10 10 H 1.48508 * 109.47092 * 299.99740 * 8 6 4 11 11 H 1.48497 * 109.47501 * 59.99592 * 8 6 4 12 12 N 1.46504 * 109.47082 * 239.99480 * 2 1 3 13 13 C 1.46496 * 120.00002 * 300.00098 * 12 2 1 14 14 C 1.34776 * 119.99626 * 120.00019 * 12 2 1 15 15 O 1.21618 * 119.99952 * 5.52384 * 14 12 2 16 16 C 1.47418 * 119.99792 * 185.51329 * 14 12 2 17 17 N 1.36063 * 126.44907 * 5.85650 * 16 14 12 18 18 C 1.29937 * 108.47772 * 179.97438 * 17 16 14 19 19 O 1.34042 * 109.24244 * 0.02562 * 18 17 16 20 20 C 1.34257 * 108.22901 * 359.72975 * 19 18 17 21 21 C 1.50703 * 126.52767 * 180.26210 * 20 19 18 22 22 H 1.08997 * 109.82060 * 195.89170 * 21 20 19 23 23 C 1.54381 * 109.82985 * 75.00689 * 21 20 19 24 24 C 1.55450 * 102.18527 * 219.18189 * 23 21 20 25 25 C 1.54951 * 100.98937 * 34.03862 * 24 23 21 26 26 O 1.43239 * 109.83015 * 316.77728 * 21 20 19 27 27 H 1.09006 * 109.47430 * 175.04929 * 1 2 3 28 28 H 1.09005 * 109.47486 * 295.05003 * 1 2 3 29 29 H 1.09004 * 109.47056 * 55.05171 * 1 2 3 30 30 H 0.97004 * 120.00128 * 355.00497 * 7 6 4 31 31 H 1.08995 * 109.46833 * 95.62759 * 13 12 2 32 32 H 1.09000 * 109.47274 * 215.62830 * 13 12 2 33 33 H 1.08997 * 109.47245 * 335.62545 * 13 12 2 34 34 H 1.08001 * 125.37491 * 180.02562 * 18 17 16 35 35 H 1.09005 * 110.84771 * 337.31585 * 23 21 20 36 36 H 1.08999 * 110.84988 * 100.93634 * 23 21 20 37 37 H 1.08997 * 111.06226 * 276.11816 * 24 23 21 38 38 H 1.09000 * 111.18175 * 152.00396 * 24 23 21 39 39 H 1.08996 * 110.30877 * 204.69166 * 25 24 23 40 40 H 1.09005 * 110.30788 * 82.52060 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.2890 -1.7583 1.1821 6 6 2.1640 -0.0225 2.4182 7 7 1.7578 1.2254 2.5039 8 14 2.9195 -0.8629 3.9055 9 1 2.9479 0.0848 5.0484 10 1 2.1071 -2.0521 4.2679 11 1 4.3047 -1.2896 3.5825 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4278 14 6 2.7931 -0.0358 -2.0833 15 8 3.1699 1.0953 -1.8429 16 6 3.1841 -0.6905 -3.3449 17 7 2.7510 -1.8987 -3.7967 18 6 3.3155 -2.1363 -4.9426 19 8 4.1162 -1.1099 -5.2619 20 6 4.0417 -0.1977 -4.2797 21 6 4.7715 1.1196 -4.2215 22 1 4.7428 1.5134 -3.2056 23 6 4.1151 2.1252 -5.1918 24 6 5.3487 2.8628 -5.7838 25 6 6.3910 1.7167 -5.8156 26 8 6.1311 0.9405 -4.6352 27 1 -0.3634 -1.0239 -0.0887 28 1 -0.3634 0.4351 0.9310 29 1 -0.3633 0.5887 -0.8424 30 1 1.4327 1.6850 1.7139 31 1 0.7944 -2.1450 -2.0825 32 1 2.5033 -2.6070 -1.8972 33 1 1.4320 -2.5714 -0.4763 34 1 3.1635 -3.0211 -5.5430 35 1 3.5622 1.6051 -5.9740 36 1 3.4685 2.8181 -4.6534 37 1 5.6734 3.6711 -5.1287 38 1 5.1416 3.2333 -6.7878 39 1 7.4017 2.1236 -5.7858 40 1 6.2544 1.1057 -6.7079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339289876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:37 Heat of formation + Delta-G solvation = -49.602260 kcal Electronic energy + Delta-G solvation = -24458.998864 eV Core-core repulsion = 20855.121504 eV Total energy + Delta-G solvation = -3603.877360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.37134 -39.47678 -38.94974 -35.53897 -34.77206 -32.81784 -32.43279 -31.57545 -29.51675 -28.11024 -26.09532 -24.92171 -24.01223 -23.38190 -21.99771 -21.57866 -20.65468 -19.21739 -17.31172 -16.90708 -16.83309 -16.66958 -16.38502 -15.95915 -15.36043 -14.79858 -14.45571 -13.93602 -13.80088 -13.71865 -13.27091 -13.01849 -12.81222 -12.35607 -12.10682 -11.96570 -11.72521 -11.51658 -11.45522 -11.36165 -11.13119 -11.08473 -11.03541 -10.71295 -10.34747 -10.18599 -10.09282 -9.90019 -9.25651 -8.87532 -8.79335 -8.41504 -7.53204 -6.39582 -4.13265 1.19461 2.24702 2.59512 3.42447 3.47009 3.58290 3.64458 3.76882 3.86623 4.15219 4.29645 4.41349 4.52456 4.66314 4.92527 5.02638 5.06214 5.23684 5.37749 5.45832 5.49707 5.52385 5.64505 5.70809 5.78666 6.01996 6.06260 6.17283 6.26250 6.41343 6.54475 6.64636 6.74489 6.75962 7.10069 7.22808 7.50230 7.63136 7.96320 8.30327 8.45894 8.76742 8.91523 9.59027 10.98231 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019150 B = 0.004525 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.787036 B = 6186.125836 C = 6762.962048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.240 3.760 3 H 0.065 0.935 4 C -0.604 4.604 5 H 0.055 0.945 6 C 0.026 3.974 7 N -0.903 5.903 8 Si 1.070 2.930 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.288 1.288 12 N -0.567 5.567 13 C 0.093 3.907 14 C 0.582 3.418 15 O -0.549 6.549 16 C -0.045 4.045 17 N -0.454 5.454 18 C 0.161 3.839 19 O -0.195 6.195 20 C 0.017 3.983 21 C 0.158 3.842 22 H 0.146 0.854 23 C -0.145 4.145 24 C -0.154 4.154 25 C 0.046 3.954 26 O -0.368 6.368 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.272 0.728 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.252 0.748 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.363 -2.428 -18.840 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.139 3.861 3 H 0.083 0.917 4 C -0.643 4.643 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.539 5.539 8 Si 0.898 3.102 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.214 1.214 12 N -0.295 5.295 13 C -0.051 4.051 14 C 0.368 3.632 15 O -0.430 6.430 16 C -0.166 4.166 17 N -0.184 5.184 18 C -0.066 4.066 19 O -0.081 6.081 20 C -0.040 4.040 21 C 0.100 3.900 22 H 0.163 0.837 23 C -0.182 4.182 24 C -0.192 4.192 25 C -0.030 4.030 26 O -0.287 6.287 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.267 0.733 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.607 -2.164 -16.667 17.426 hybrid contribution -0.219 -0.244 -2.290 2.314 sum 4.388 -2.407 -18.957 19.606 Atomic orbital electron populations 1.22163 0.98720 0.99696 0.99670 1.19148 0.90233 0.95118 0.81557 0.91669 1.22079 1.48842 0.97977 0.95379 0.92723 1.25804 0.94736 0.96144 1.01291 1.70785 1.38974 1.11558 1.32560 0.83528 0.76206 0.75064 0.75381 1.20671 1.21393 1.21432 1.48107 1.47091 1.12134 1.22169 1.21747 1.00342 0.82126 1.00874 1.16826 0.79792 0.85209 0.81380 1.90695 1.56136 1.18717 1.77407 1.21891 1.02568 0.93204 0.98909 1.71076 1.23889 1.14022 1.09435 1.28131 0.90693 0.93131 0.94678 1.84339 1.54578 1.26197 1.42948 1.24105 0.99599 0.93126 0.87181 1.21786 0.80246 0.85313 1.02658 0.83663 1.23193 0.98653 0.97834 0.98536 1.23327 0.94748 0.98677 1.02419 1.23462 0.99591 0.91551 0.88383 1.88548 1.26513 1.69472 1.44195 0.93971 0.91959 0.96119 0.91694 0.93786 0.91026 0.91030 0.73256 0.90438 0.88451 0.89658 0.89547 0.89224 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.15 37.15 0.34 -3.01 16 2 C 0.24 6.22 2.26 -69.08 -0.16 6.07 16 3 H 0.07 1.90 5.69 -51.93 -0.30 1.61 16 4 C -0.60 -16.86 8.10 -34.44 -0.28 -17.14 16 5 H 0.05 1.51 6.75 -52.48 -0.35 1.16 16 6 C 0.03 0.74 5.45 -17.82 -0.10 0.64 16 7 N -0.90 -27.16 13.63 55.43 0.76 -26.41 16 8 Si 1.07 25.26 29.91 -169.99 -5.08 20.17 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.57 -13.12 2.75 -176.54 -0.49 -13.60 16 13 C 0.09 1.81 8.14 59.84 0.49 2.30 16 14 C 0.58 13.18 7.66 -12.52 -0.10 13.09 16 15 O -0.55 -13.55 13.96 5.26 0.07 -13.48 16 16 C -0.05 -0.85 6.60 -83.02 -0.55 -1.39 16 17 N -0.45 -7.28 8.11 -11.49 -0.09 -7.37 16 18 C 0.16 1.93 13.19 51.96 0.69 2.61 16 19 O -0.19 -2.71 10.73 6.46 0.07 -2.64 16 20 C 0.02 0.27 6.19 -35.08 -0.22 0.05 16 21 C 0.16 2.42 3.73 -27.16 -0.10 2.32 16 22 H 0.15 2.60 5.94 -51.93 -0.31 2.30 16 23 C -0.14 -1.69 6.55 -24.71 -0.16 -1.86 16 24 C -0.15 -1.39 7.16 -24.40 -0.17 -1.57 16 25 C 0.05 0.47 7.78 38.19 0.30 0.77 16 26 O -0.37 -5.46 11.00 -35.30 -0.39 -5.85 16 27 H 0.04 0.91 7.51 -51.93 -0.39 0.52 16 28 H 0.06 1.52 7.90 -51.93 -0.41 1.11 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.27 8.20 6.44 -40.82 -0.26 7.94 16 31 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.07 1.33 5.94 -51.93 -0.31 1.03 16 33 H 0.07 1.44 6.72 -51.93 -0.35 1.09 16 34 H 0.25 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.08 0.85 7.84 -51.93 -0.41 0.45 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 329.11 15.07 4.96 4.96 Total: -1.00 -34.05 329.11 -5.48 -39.52 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.26 Total: 1.81 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.02 Total: 2.88 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.18 Total: -47.38 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.25 Total: -21.96 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.05 -5.48 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339289876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.081 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds